FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 24JGR

Calculation Name: 1QUQ-B-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1QUQ

Chain ID: B

ChEMBL ID:

UniProt ID: P15927

Base Structure: X-ray

Registration Date: 2025-07-14

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 211
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -904408.964502
FMO2-HF: Nuclear repulsion 858915.2139
FMO2-HF: Total energy -45493.750602
FMO2-MP2: Total energy -45622.862766


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:3:ASP)


Summations of interaction energy for fragment #1(B:3:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-9.056-6.2217.266-5.826-4.2790.021
Interaction energy analysis for fragmet #1(B:3:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.146 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4B4MET0-0.1330.0793.932-1.795-0.9970.012-0.426-0.3850.002
5B5MET00.020-0.1843.456-0.2171.943-0.006-1.219-0.9360.004
6B5MET0-0.0600.1353.2120.1840.5180.058-0.071-0.3220.000
7B6ASP00.078-0.0775.2770.2480.317-0.002-0.005-0.0630.000
8B6ASP-1-0.979-0.8456.819-2.710-2.7100.0000.0000.0000.000
9B7LEU0-0.013-0.1427.7510.0800.0800.0000.0000.0000.000
10B7LEU0-0.0400.1107.5800.1350.1350.0000.0000.0000.000
11B8PRO00.010-0.0819.285-0.022-0.0220.0000.0000.0000.000
12B9ARG00.084-0.0229.4040.1720.1720.0000.0000.0000.000
13B9ARG10.8011.0606.126-0.150-0.1500.0000.0000.0000.000
14B10SER00.057-0.10510.537-0.177-0.1770.0000.0000.0000.000
15B10SER0-0.0100.08714.257-0.042-0.0420.0000.0000.0000.000
16B11ARG00.072-0.06013.5460.1530.1530.0000.0000.0000.000
17B11ARG10.7500.99313.954-0.311-0.3110.0000.0000.0000.000
18B12ILE00.004-0.09215.464-0.097-0.0970.0000.0000.0000.000
19B12ILE0-0.0830.06614.8170.0050.0050.0000.0000.0000.000
20B13ASN00.124-0.03717.396-0.001-0.0010.0000.0000.0000.000
21B13ASN0-0.0420.05720.8950.0180.0180.0000.0000.0000.000
22B14ALA00.150-0.09619.4590.0600.0600.0000.0000.0000.000
23B14ALA0-0.0720.12021.254-0.011-0.0110.0000.0000.0000.000
24B15GLY0-0.060-0.14820.7130.0270.0270.0000.0000.0000.000
25B16MET00.0510.00020.054-0.033-0.0330.0000.0000.0000.000
26B16MET0-0.0690.11719.3110.0130.0130.0000.0000.0000.000
27B17LEU00.079-0.10717.5550.0420.0420.0000.0000.0000.000
28B17LEU0-0.0860.11716.0270.0030.0030.0000.0000.0000.000
29B18ALA00.170-0.09318.2860.0890.0890.0000.0000.0000.000
30B18ALA0-0.0820.11322.451-0.015-0.0150.0000.0000.0000.000
31B19GLN0-0.035-0.14920.476-0.002-0.0020.0000.0000.0000.000
32B19GLN0-0.0760.08921.114-0.014-0.0140.0000.0000.0000.000
33B20PHE0-0.008-0.09516.463-0.055-0.0550.0000.0000.0000.000
34B20PHE0-0.0800.08915.1850.0060.0060.0000.0000.0000.000
35B21ILE00.134-0.09615.1880.1980.1980.0000.0000.0000.000
36B21ILE0-0.0890.10916.725-0.014-0.0140.0000.0000.0000.000
37B22ASP00.065-0.08612.841-0.104-0.1040.0000.0000.0000.000
38B22ASP-1-0.912-0.81312.3121.5801.5800.0000.0000.0000.000
39B23LYS00.018-0.14212.1660.1800.1800.0000.0000.0000.000
40B23LYS10.8231.03413.225-0.905-0.9050.0000.0000.0000.000
41B24PRO00.024-0.1047.6450.1920.1920.0000.0000.0000.000
42B25VAL0-0.026-0.0229.319-0.409-0.4090.0000.0000.0000.000
43B25VAL0-0.0510.09911.260-0.060-0.0600.0000.0000.0000.000
44B26CYS00.184-0.0979.4170.4030.4030.0000.0000.0000.000
45B26CYS0-0.1770.10310.676-0.095-0.0950.0000.0000.0000.000
46B27PHE00.116-0.11311.430-0.159-0.1590.0000.0000.0000.000
47B27PHE0-0.0960.08713.4300.0160.0160.0000.0000.0000.000
48B28VAL00.101-0.11713.7180.0530.0530.0000.0000.0000.000
49B28VAL0-0.1130.12015.018-0.010-0.0100.0000.0000.0000.000
50B29GLY0-0.003-0.10716.192-0.006-0.0060.0000.0000.0000.000
51B30ARG00.1120.02218.863-0.013-0.0130.0000.0000.0000.000
52B30ARG10.8731.06722.759-0.187-0.1870.0000.0000.0000.000
53B31LEU00.135-0.11620.2350.0430.0430.0000.0000.0000.000
54B31LEU0-0.1440.12818.7260.0000.0000.0000.0000.0000.000
55B32GLU00.064-0.11120.980-0.044-0.0440.0000.0000.0000.000
56B32GLU-1-0.970-0.81122.7790.2860.2860.0000.0000.0000.000
57B33LYS00.033-0.11822.132-0.037-0.0370.0000.0000.0000.000
58B33LYS10.7811.00923.375-0.317-0.3170.0000.0000.0000.000
59B34ILE00.143-0.07420.5590.0620.0620.0000.0000.0000.000
60B34ILE0-0.0380.14419.5700.0050.0050.0000.0000.0000.000
61B35HIS00.103-0.09520.221-0.046-0.0460.0000.0000.0000.000
62B35HIS0-0.0880.11219.7650.0070.0070.0000.0000.0000.000
63B36PRO0-0.030-0.11121.283-0.004-0.0040.0000.0000.0000.000
64B37THR00.033-0.00620.411-0.038-0.0380.0000.0000.0000.000
65B37THR0-0.0510.04919.5850.0220.0220.0000.0000.0000.000
66B38GLY00.029-0.04818.722-0.022-0.0220.0000.0000.0000.000
67B39LYS00.0830.02415.004-0.003-0.0030.0000.0000.0000.000
68B39LYS10.7921.01613.313-0.520-0.5200.0000.0000.0000.000
69B40MET00.125-0.08214.7210.1450.1450.0000.0000.0000.000
70B40MET0-0.1430.06516.635-0.031-0.0310.0000.0000.0000.000
71B41PHE00.056-0.09816.575-0.099-0.0990.0000.0000.0000.000
72B41PHE00.0010.12213.3120.0130.0130.0000.0000.0000.000
73B42ILE00.081-0.07917.3440.1130.1130.0000.0000.0000.000
74B42ILE0-0.1350.07320.577-0.011-0.0110.0000.0000.0000.000
75B43LEU00.069-0.11717.947-0.065-0.0650.0000.0000.0000.000
76B43LEU0-0.0510.12915.0950.0120.0120.0000.0000.0000.000
77B44SER00.060-0.08619.2690.0500.0500.0000.0000.0000.000
78B44SER0-0.0710.03423.570-0.008-0.0080.0000.0000.0000.000
79B45ASP00.054-0.08120.935-0.013-0.0130.0000.0000.0000.000
80B45ASP-1-0.786-0.79720.5400.3970.3970.0000.0000.0000.000
81B46GLY0-0.013-0.11921.739-0.029-0.0290.0000.0000.0000.000
82B47GLU00.0540.00024.331-0.029-0.0290.0000.0000.0000.000
83B47GLU-1-0.926-0.79124.9670.2950.2950.0000.0000.0000.000
84B48GLY0-0.016-0.12325.961-0.006-0.0060.0000.0000.0000.000
85B49LYS00.064-0.00624.781-0.008-0.0080.0000.0000.0000.000
86B49LYS10.7701.03924.083-0.350-0.3500.0000.0000.0000.000
87B50ASN00.050-0.09622.0320.0140.0140.0000.0000.0000.000
88B50ASN0-0.0750.07922.575-0.003-0.0030.0000.0000.0000.000
89B51GLY00.039-0.08018.2450.0060.0060.0000.0000.0000.000
90B52THR00.0440.00317.699-0.037-0.0370.0000.0000.0000.000
91B52THR0-0.0550.07017.082-0.026-0.0260.0000.0000.0000.000
92B53ILE00.047-0.09913.7610.1280.1280.0000.0000.0000.000
93B53ILE0-0.0490.12811.9960.0290.0290.0000.0000.0000.000
94B54GLU00.132-0.06912.949-0.213-0.2130.0000.0000.0000.000
95B54GLU-1-0.860-0.76612.5961.1051.1050.0000.0000.0000.000
96B55LEU00.058-0.14110.2880.4680.4680.0000.0000.0000.000
97B55LEU0-0.0370.14310.966-0.002-0.0020.0000.0000.0000.000
98B56MET00.116-0.0908.443-0.112-0.1120.0000.0000.0000.000
99B56MET0-0.0770.1186.7440.0650.0650.0000.0000.0000.000
100B57GLU00.013-0.1289.823-0.098-0.0980.0000.0000.0000.000
101B57GLU-1-0.932-0.8239.6690.2010.2010.0000.0000.0000.000
102B58PRO0-0.076-0.15111.9060.1010.1010.0000.0000.0000.000
103B59LEU00.1050.01914.732-0.051-0.0510.0000.0000.0000.000
104B59LEU0-0.0920.08314.5120.0180.0180.0000.0000.0000.000
105B60ASP00.065-0.08316.1230.0170.0170.0000.0000.0000.000
106B60ASP-1-0.998-0.86016.501-0.094-0.0940.0000.0000.0000.000
107B61GLU0-0.008-0.15418.131-0.021-0.0210.0000.0000.0000.000
108B61GLU-1-0.937-0.82416.233-0.054-0.0540.0000.0000.0000.000
109B62GLU00.099-0.11719.1090.0470.0470.0000.0000.0000.000
110B62GLU-1-1.048-0.85722.8480.1160.1160.0000.0000.0000.000
111B63ILE00.054-0.09818.107-0.042-0.0420.0000.0000.0000.000
112B63ILE0-0.0900.10715.8810.0090.0090.0000.0000.0000.000
113B64SER0-0.039-0.13619.5410.0270.0270.0000.0000.0000.000
114B64SER00.0000.09122.814-0.011-0.0110.0000.0000.0000.000
115B65GLY00.031-0.07920.865-0.016-0.0160.0000.0000.0000.000
116B66ILE00.1110.00619.9380.0420.0420.0000.0000.0000.000
117B66ILE0-0.1470.08318.470-0.004-0.0040.0000.0000.0000.000
118B67VAL00.101-0.12416.082-0.071-0.0710.0000.0000.0000.000
119B67VAL0-0.0690.12413.9280.0120.0120.0000.0000.0000.000
120B68GLU00.101-0.09613.4300.0670.0670.0000.0000.0000.000
121B68GLU-1-0.895-0.79611.5240.2170.2170.0000.0000.0000.000
122B69VAL00.090-0.10810.174-0.105-0.1050.0000.0000.0000.000
123B69VAL0-0.0830.1039.6870.0170.0170.0000.0000.0000.000
124B70VAL00.101-0.0966.760-0.202-0.2020.0000.0000.0000.000
125B70VAL0-0.0640.1155.298-0.002-0.0020.0000.0000.0000.000
126B71GLY00.031-0.0996.0850.6930.6930.0000.0000.0000.000
127B72ARG00.1410.0137.092-0.667-0.6670.0000.0000.0000.000
128B72ARG10.7291.0217.501-2.555-2.5550.0000.0000.0000.000
129B73VAL00.116-0.1159.250-0.021-0.0210.0000.0000.0000.000
130B73VAL0-0.1350.12412.994-0.026-0.0260.0000.0000.0000.000
131B74THR00.015-0.05012.9640.0570.0570.0000.0000.0000.000
132B74THR0-0.0150.05512.171-0.096-0.0960.0000.0000.0000.000
133B75ALA00.157-0.07114.137-0.079-0.0790.0000.0000.0000.000
134B75ALA0-0.0670.10317.445-0.012-0.0120.0000.0000.0000.000
135B76LYS0-0.039-0.13017.398-0.094-0.0940.0000.0000.0000.000
136B76LYS10.7720.97016.518-0.967-0.9670.0000.0000.0000.000
137B77ALA00.086-0.03717.751-0.032-0.0320.0000.0000.0000.000
138B77ALA0-0.0810.08719.711-0.023-0.0230.0000.0000.0000.000
139B78THR0-0.010-0.07916.291-0.090-0.0900.0000.0000.0000.000
140B78THR0-0.0600.01015.6430.0330.0330.0000.0000.0000.000
141B79ILE00.090-0.10112.3480.0350.0350.0000.0000.0000.000
142B79ILE0-0.0640.10510.266-0.021-0.0210.0000.0000.0000.000
143B80LEU00.160-0.0899.783-0.363-0.3630.0000.0000.0000.000
144B80LEU0-0.1580.0877.297-0.045-0.0450.0000.0000.0000.000
145B81CYS00.057-0.1517.8891.1731.1730.0000.0000.0000.000
146B81CYS0-0.1370.1188.356-0.201-0.2010.0000.0000.0000.000
147B82THR0-0.024-0.0703.508-1.125-1.0440.0360.057-0.1740.000
148B82THR0-0.1210.0382.168-1.248-1.9627.170-4.151-2.3050.015
149B83SER00.141-0.0764.590-1.560-1.453-0.002-0.011-0.0940.000
150B83SER0-0.0110.0715.0700.1690.1690.0000.0000.0000.000
151B84TYR0-0.001-0.0936.3990.3570.3570.0000.0000.0000.000
152B84TYR0-0.0790.05410.3600.0410.0410.0000.0000.0000.000
153B85VAL00.114-0.0769.891-0.193-0.1930.0000.0000.0000.000
154B85VAL0-0.0870.10010.560-0.021-0.0210.0000.0000.0000.000
155B86GLN00.142-0.08012.7760.1150.1150.0000.0000.0000.000
156B86GLN0-0.0420.13916.6290.0150.0150.0000.0000.0000.000
157B87PHE0-0.033-0.13716.487-0.069-0.0690.0000.0000.0000.000
158B87PHE0-0.0820.08715.1680.0060.0060.0000.0000.0000.000
159B88LYS00.150-0.02218.6060.0110.0110.0000.0000.0000.000
160B88LYS10.8541.02920.5820.1390.1390.0000.0000.0000.000
161B89GLU0-0.026-0.15021.7320.0030.0030.0000.0000.0000.000
162B89GLU-1-0.894-0.81723.3030.1010.1010.0000.0000.0000.000
163B90ASP00.125-0.01525.177-0.002-0.0020.0000.0000.0000.000
164B90ASP-1-0.909-0.88227.562-0.020-0.0200.0000.0000.0000.000
165B91SER00.006-0.08628.3510.0110.0110.0000.0000.0000.000
166B91SER0-0.0750.03631.880-0.001-0.0010.0000.0000.0000.000
167B92HIS0-0.048-0.11429.7130.0060.0060.0000.0000.0000.000
168B92HIS10.8261.02228.9560.0010.0010.0000.0000.0000.000
169B93PRO00.075-0.05627.483-0.005-0.0050.0000.0000.0000.000
170B94PHE00.1090.00323.673-0.007-0.0070.0000.0000.0000.000
171B94PHE0-0.0940.08620.8100.0040.0040.0000.0000.0000.000
172B95ASP00.082-0.13925.1490.0160.0160.0000.0000.0000.000
173B95ASP-1-0.939-0.79627.1940.1270.1270.0000.0000.0000.000
174B96LEU00.105-0.12923.4190.0000.0000.0000.0000.0000.000
175B96LEU0-0.1280.11320.552-0.005-0.0050.0000.0000.0000.000
176B97GLY00.002-0.09824.3000.0240.0240.0000.0000.0000.000
177B98LEU00.100-0.01626.6570.0180.0180.0000.0000.0000.000
178B98LEU0-0.0740.12726.736-0.002-0.0020.0000.0000.0000.000
179B99TYR00.097-0.07622.053-0.006-0.0060.0000.0000.0000.000
180B99TYR0-0.0220.10616.775-0.008-0.0080.0000.0000.0000.000
181B100ASN00.119-0.05922.3240.0200.0200.0000.0000.0000.000
182B100ASN0-0.1410.05223.6280.0300.0300.0000.0000.0000.000
183B101GLU00.009-0.15723.5640.0280.0280.0000.0000.0000.000
184B101GLU-1-0.871-0.79427.0950.1640.1640.0000.0000.0000.000
185B102ALA00.120-0.08323.335-0.001-0.0010.0000.0000.0000.000
186B102ALA0-0.0850.10822.588-0.004-0.0040.0000.0000.0000.000
187B103VAL00.048-0.09520.897-0.012-0.0120.0000.0000.0000.000
188B103VAL0-0.1120.09119.0090.0070.0070.0000.0000.0000.000
189B104LYS00.094-0.09921.6390.0290.0290.0000.0000.0000.000
190B104LYS10.7761.00824.964-0.216-0.2160.0000.0000.0000.000
191B105ILE00.126-0.05224.7760.0050.0050.0000.0000.0000.000
192B105ILE0-0.1060.08325.479-0.005-0.0050.0000.0000.0000.000
193B106ILE00.041-0.10221.162-0.020-0.0200.0000.0000.0000.000
194B106ILE0-0.1060.07118.9020.0050.0050.0000.0000.0000.000
195B107HIS0-0.014-0.09722.577-0.005-0.0050.0000.0000.0000.000
196B107HIS10.7460.96918.373-0.412-0.4120.0000.0000.0000.000
197B108ASP00.197-0.06923.2670.0100.0100.0000.0000.0000.000
198B108ASP-1-1.027-0.86527.5820.2000.2000.0000.0000.0000.000
199B109PHE0-0.062-0.10925.726-0.009-0.0090.0000.0000.0000.000
200B109PHE0-0.1420.05826.494-0.008-0.0080.0000.0000.0000.000
201B110PRO00.125-0.07222.943-0.010-0.0100.0000.0000.0000.000
202B111GLN00.045-0.00123.322-0.004-0.0040.0000.0000.0000.000
203B111GLN0-0.0550.10327.5100.0120.0120.0000.0000.0000.000
204B112PHE0-0.048-0.13725.671-0.021-0.0210.0000.0000.0000.000
205B112PHE0-0.0560.08526.6730.0000.0000.0000.0000.0000.000
206B113TYR00.119-0.09321.854-0.027-0.0270.0000.0000.0000.000
207B113TYR0-0.1010.10317.6380.0080.0080.0000.0000.0000.000
208B114PRO00.013-0.09220.3190.0390.0390.0000.0000.0000.000
209B115LEU00.1220.01616.677-0.028-0.0280.0000.0000.0000.000
210B115LEU0-0.1170.10714.0860.0100.0100.0000.0000.0000.000
211B116GLY0-0.042-0.12315.9240.0130.0130.0000.0000.0000.000