FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 6513Z

Calculation Name: 1MW7-A-Xray549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1MW7

Chain ID: A

ChEMBL ID:

UniProt ID: O24970

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 220
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2525173.146581
FMO2-HF: Nuclear repulsion 2438610.233471
FMO2-HF: Total energy -86562.91311
FMO2-MP2: Total energy -86814.781101


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:21:LYS)


Summations of interaction energy for fragment #1(A:21:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-460.81-456.9790.128-1.301-2.658-0.006
Interaction energy analysis for fragmet #1(A:21:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 2 / q_Mulliken : 1.898 / q_NPA : 1.930
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A23PHE00.0480.0203.8135.7837.453-0.004-0.716-0.950-0.002
4A24PRO00.014-0.0052.9317.0907.9660.132-0.295-0.712-0.002
5A25LYS10.8620.9433.338105.531106.0460.003-0.117-0.401-0.001
207A227GLU-1-0.880-0.9524.070-77.083-76.929-0.001-0.032-0.1210.000
208A228ASP-1-1.040-1.0154.370-115.659-115.345-0.001-0.026-0.2870.000
210A230ASP-1-0.915-0.9683.876-96.771-96.469-0.001-0.115-0.187-0.001
6A26LEU00.0400.0196.4827.5557.5550.0000.0000.0000.000
7A27ALA0-0.001-0.0078.4465.6175.6170.0000.0000.0000.000
8A28LYS10.8060.9077.84560.98860.9880.0000.0000.0000.000
9A29ALA00.0730.03710.7073.8123.8120.0000.0000.0000.000
10A30ILE0-0.044-0.02312.6163.0423.0420.0000.0000.0000.000
11A31THR0-0.058-0.04713.0742.4342.4340.0000.0000.0000.000
12A32LEU00.0050.00214.7741.7581.7580.0000.0000.0000.000
13A33ALA00.0390.02516.6121.8571.8570.0000.0000.0000.000
14A34ALA0-0.014-0.00318.4561.6131.6130.0000.0000.0000.000
15A35LYS10.8490.93019.25827.41527.4150.0000.0000.0000.000
16A36ASP-1-0.972-0.98420.577-27.145-27.1450.0000.0000.0000.000
17A37GLY00.0140.00822.9790.5990.5990.0000.0000.0000.000
18A38GLY0-0.0150.00824.0670.7750.7750.0000.0000.0000.000
19A39SER0-0.030-0.05322.940-0.937-0.9370.0000.0000.0000.000
20A40GLU-1-0.831-0.88324.003-22.047-22.0470.0000.0000.0000.000
21A41PRO0-0.009-0.01422.8940.1100.1100.0000.0000.0000.000
22A42ASP-1-0.893-0.93924.974-20.795-20.7950.0000.0000.0000.000
23A43THR0-0.041-0.02428.1990.3510.3510.0000.0000.0000.000
24A44ASN0-0.022-0.00622.214-0.286-0.2860.0000.0000.0000.000
25A45ALA00.0450.00623.852-0.870-0.8700.0000.0000.0000.000
26A46LYS10.9911.00320.06627.79427.7940.0000.0000.0000.000
27A47LEU00.0170.01218.566-1.839-1.8390.0000.0000.0000.000
28A48ARG10.8680.92219.37021.87821.8780.0000.0000.0000.000
29A49THR00.0340.01917.801-0.638-0.6380.0000.0000.0000.000
30A50ALA0-0.0110.00115.098-1.824-1.8240.0000.0000.0000.000
31A51ILE0-0.038-0.03815.177-2.112-2.1120.0000.0000.0000.000
32A52LEU0-0.0100.00516.623-0.981-0.9810.0000.0000.0000.000
33A53ASN00.0500.01612.801-0.482-0.4820.0000.0000.0000.000
34A54ALA0-0.017-0.01711.748-2.777-2.7770.0000.0000.0000.000
35A55LYS10.8860.93212.57728.08628.0860.0000.0000.0000.000
36A56ALA00.0370.03614.8230.3500.3500.0000.0000.0000.000
37A57GLN0-0.0290.0068.192-3.760-3.7600.0000.0000.0000.000
38A58ASN0-0.003-0.00910.7562.9862.9860.0000.0000.0000.000
39A59MET0-0.070-0.0189.0270.1420.1420.0000.0000.0000.000
40A60PRO00.0220.01511.7313.2613.2610.0000.0000.0000.000
41A61LYS10.8940.94514.61926.74926.7490.0000.0000.0000.000
42A62ASP-1-0.820-0.92417.071-28.197-28.1970.0000.0000.0000.000
43A63ASN0-0.057-0.03411.465-0.777-0.7770.0000.0000.0000.000
44A64ILE00.0540.02613.605-0.510-0.5100.0000.0000.0000.000
45A65ASP-1-0.849-0.89815.249-26.221-26.2210.0000.0000.0000.000
46A66ALA00.011-0.00314.6980.8150.8150.0000.0000.0000.000
47A67ALA0-0.047-0.02613.1970.0430.0430.0000.0000.0000.000
48A68ILE00.0340.01415.1530.7790.7790.0000.0000.0000.000
49A69LYS10.8270.88818.78226.84626.8460.0000.0000.0000.000
50A70ARG10.9110.98312.27240.30740.3070.0000.0000.0000.000
51A71ALA00.0810.06017.9950.2750.2750.0000.0000.0000.000
52A72SER0-0.032-0.00819.3711.2321.2320.0000.0000.0000.000
53A73SER0-0.068-0.05819.0730.7080.7080.0000.0000.0000.000
54A74LYS10.9320.95720.20224.55724.5570.0000.0000.0000.000
55A75GLU-1-0.876-0.94315.468-31.487-31.4870.0000.0000.0000.000
56A76GLY00.0230.01515.684-2.080-2.0800.0000.0000.0000.000
57A77ASN0-0.099-0.04517.9310.9100.9100.0000.0000.0000.000
58A78LEU0-0.007-0.00412.532-0.310-0.3100.0000.0000.0000.000
59A79SER0-0.030-0.01316.0571.9851.9850.0000.0000.0000.000
60A80GLU-1-0.893-0.95415.566-36.468-36.4680.0000.0000.0000.000
61A81ILE0-0.035-0.02116.1072.2752.2750.0000.0000.0000.000
62A82THR00.0020.00716.327-2.018-2.0180.0000.0000.0000.000
63A83TYR00.009-0.00215.6301.6801.6800.0000.0000.0000.000
64A84GLU-1-0.741-0.85717.909-27.602-27.6020.0000.0000.0000.000
65A85GLY00.004-0.01418.3500.2300.2300.0000.0000.0000.000
66A86LYS10.9190.97619.31624.12924.1290.0000.0000.0000.000
67A87ALA00.0300.00018.146-0.547-0.5470.0000.0000.0000.000
68A88ASN00.002-0.00620.2011.7781.7780.0000.0000.0000.000
69A89PHE00.016-0.00419.713-0.328-0.3280.0000.0000.0000.000
70A90GLY00.0320.03723.1630.1790.1790.0000.0000.0000.000
71A91VAL00.0290.03416.688-0.119-0.1190.0000.0000.0000.000
72A92LEU0-0.055-0.03419.6340.4790.4790.0000.0000.0000.000
73A93ILE00.023-0.00114.110-1.236-1.2360.0000.0000.0000.000
74A94ILE0-0.021-0.00915.8671.6701.6700.0000.0000.0000.000
75A95MET0-0.020-0.00112.585-2.736-2.7360.0000.0000.0000.000
76A96GLU-1-0.779-0.86613.418-34.475-34.4750.0000.0000.0000.000
77A97CYS0-0.031-0.00311.724-3.862-3.8620.0000.0000.0000.000
78A98MET0-0.0030.01110.9952.3072.3070.0000.0000.0000.000
79A99THR00.007-0.01011.073-3.245-3.2450.0000.0000.0000.000
80A100ASP-1-0.798-0.87313.435-36.785-36.7850.0000.0000.0000.000
81A101ASN0-0.028-0.02315.1912.7712.7710.0000.0000.0000.000
82A102PRO00.0880.04016.237-1.084-1.0840.0000.0000.0000.000
83A103THR0-0.018-0.00817.951-0.263-0.2630.0000.0000.0000.000
84A104ARG10.8000.87111.90542.35142.3510.0000.0000.0000.000
85A105THR00.0210.00712.9460.0520.0520.0000.0000.0000.000
86A106ILE0-0.016-0.01114.880-0.410-0.4100.0000.0000.0000.000
87A107ALA0-0.020-0.00718.0660.7420.7420.0000.0000.0000.000
88A108ASN0-0.0040.00711.8813.0313.0310.0000.0000.0000.000
89A109LEU00.0820.04913.113-0.173-0.1730.0000.0000.0000.000
90A110LYS10.9060.96315.88429.13629.1360.0000.0000.0000.000
91A111SER0-0.067-0.03416.0800.7280.7280.0000.0000.0000.000
92A112TYR0-0.046-0.05111.0161.2051.2050.0000.0000.0000.000
93A113PHE00.0720.03115.2540.2780.2780.0000.0000.0000.000
94A114ASN0-0.090-0.05817.8142.2362.2360.0000.0000.0000.000
95A115LYS10.9250.97214.28139.62439.6240.0000.0000.0000.000
96A116THR0-0.039-0.02416.969-0.464-0.4640.0000.0000.0000.000
97A117GLN00.0330.01719.367-0.036-0.0360.0000.0000.0000.000
98A118GLY00.0350.02522.215-0.159-0.1590.0000.0000.0000.000
99A119ALA0-0.0020.01318.848-0.124-0.1240.0000.0000.0000.000
100A120SER0-0.085-0.04020.8430.8010.8010.0000.0000.0000.000
101A121ILE00.0110.01219.127-0.427-0.4270.0000.0000.0000.000
102A122VAL0-0.057-0.02620.7871.3691.3690.0000.0000.0000.000
103A123PRO0-0.017-0.00723.174-0.767-0.7670.0000.0000.0000.000
104A124ASN0-0.001-0.02121.756-0.158-0.1580.0000.0000.0000.000
105A125GLY00.0370.01824.8771.0081.0080.0000.0000.0000.000
106A126SER0-0.077-0.05024.7920.9170.9170.0000.0000.0000.000
107A127LEU0-0.070-0.04620.4530.5080.5080.0000.0000.0000.000
108A128GLU-1-0.913-0.95324.521-21.446-21.4460.0000.0000.0000.000
109A129PHE0-0.040-0.02726.9580.4000.4000.0000.0000.0000.000
110A130MET0-0.0120.00824.1850.4740.4740.0000.0000.0000.000
111A131PHE0-0.032-0.01418.109-0.813-0.8130.0000.0000.0000.000
112A132ASN00.0110.01823.1951.2001.2000.0000.0000.0000.000
113A133ARG10.8510.92318.65729.91229.9120.0000.0000.0000.000
114A134LYS10.8630.90921.58824.72924.7290.0000.0000.0000.000
115A135SER0-0.062-0.05320.890-1.825-1.8250.0000.0000.0000.000
116A136VAL0-0.021-0.01017.2810.6530.6530.0000.0000.0000.000
117A137PHE0-0.002-0.00918.426-1.753-1.7530.0000.0000.0000.000
118A138GLU-1-0.842-0.89814.184-39.346-39.3460.0000.0000.0000.000
119A139CYS0-0.031-0.02018.5330.2380.2380.0000.0000.0000.000
120A140LEU00.0460.03418.339-0.249-0.2490.0000.0000.0000.000
121A141LYS10.8810.92721.19423.02623.0260.0000.0000.0000.000
122A142ASN00.0430.00823.8231.1401.1400.0000.0000.0000.000
123A143GLU-1-0.937-0.97423.009-23.022-23.0220.0000.0000.0000.000
124A144VAL0-0.002-0.01025.4370.7710.7710.0000.0000.0000.000
125A145GLU-1-0.859-0.91127.984-20.417-20.4170.0000.0000.0000.000
126A146ASN0-0.080-0.03228.1601.3301.3300.0000.0000.0000.000
127A147LEU0-0.098-0.04528.4310.7040.7040.0000.0000.0000.000
128A148LYS10.8830.94232.15317.03517.0350.0000.0000.0000.000
129A149LEU0-0.0240.00830.4790.6480.6480.0000.0000.0000.000
130A150SER0-0.032-0.04032.032-0.505-0.5050.0000.0000.0000.000
131A151LEU00.0180.00127.488-0.387-0.3870.0000.0000.0000.000
132A152GLU-1-0.840-0.92830.726-18.176-18.1760.0000.0000.0000.000
133A153ASP-1-0.877-0.91533.881-16.805-16.8050.0000.0000.0000.000
134A154LEU0-0.048-0.02426.333-0.037-0.0370.0000.0000.0000.000
135A155GLU-1-0.915-0.96630.342-19.816-19.8160.0000.0000.0000.000
136A156PHE0-0.035-0.01931.2270.2180.2180.0000.0000.0000.000
137A157ALA0-0.021-0.01533.3250.1810.1810.0000.0000.0000.000
138A158LEU0-0.010-0.00727.662-0.087-0.0870.0000.0000.0000.000
139A159ILE0-0.0060.00831.448-0.307-0.3070.0000.0000.0000.000
140A160ASP-1-0.939-0.97133.499-16.687-16.6870.0000.0000.0000.000
141A161TYR0-0.106-0.05830.8270.1550.1550.0000.0000.0000.000
142A162GLY0-0.002-0.00930.299-0.666-0.6660.0000.0000.0000.000
143A163LEU0-0.065-0.01627.556-0.854-0.8540.0000.0000.0000.000
144A164GLU-1-0.882-0.93627.001-21.853-21.8530.0000.0000.0000.000
145A165GLU-1-0.870-0.93424.071-24.698-24.6980.0000.0000.0000.000
146A166LEU00.007-0.00325.241-0.857-0.8570.0000.0000.0000.000
147A167GLU-1-0.830-0.89320.590-27.934-27.9340.0000.0000.0000.000
148A168GLU-1-0.896-0.96422.605-23.023-23.0230.0000.0000.0000.000
149A169VAL0-0.024-0.02216.452-0.449-0.4490.0000.0000.0000.000
150A170GLU-1-0.903-0.97019.044-26.130-26.1300.0000.0000.0000.000
151A171ASP-1-0.948-0.96318.432-30.523-30.5230.0000.0000.0000.000
152A172LYS10.7950.89213.44138.42338.4230.0000.0000.0000.000
153A173ILE00.0320.02220.0240.6800.6800.0000.0000.0000.000
154A174ILE0-0.042-0.02316.750-1.453-1.4530.0000.0000.0000.000
155A175ILE00.0370.01820.4691.1791.1790.0000.0000.0000.000
156A176ARG10.7430.84918.36027.45127.4510.0000.0000.0000.000
157A177GLY00.1250.06223.4481.1921.1920.0000.0000.0000.000
158A178ASP-1-0.783-0.88024.840-23.350-23.3500.0000.0000.0000.000
159A179TYR0-0.0100.01322.848-0.836-0.8360.0000.0000.0000.000
160A180ASN0-0.096-0.07225.266-0.242-0.2420.0000.0000.0000.000
161A181SER00.0130.01427.7150.8500.8500.0000.0000.0000.000
162A182PHE0-0.0080.01520.1500.2130.2130.0000.0000.0000.000
163A183LYS10.9320.94825.48820.10220.1020.0000.0000.0000.000
164A184LEU0-0.0110.02227.5140.1760.1760.0000.0000.0000.000
165A185LEU00.0950.04424.9150.1520.1520.0000.0000.0000.000
166A186ASN0-0.077-0.05123.156-0.788-0.7880.0000.0000.0000.000
167A187GLU-1-0.933-0.96326.135-18.574-18.5740.0000.0000.0000.000
168A188GLY00.0670.04429.5210.6200.6200.0000.0000.0000.000
169A189PHE00.020-0.00723.8720.3120.3120.0000.0000.0000.000
170A190GLU-1-0.956-0.97426.362-22.556-22.5560.0000.0000.0000.000
171A191SER0-0.097-0.06128.9840.7440.7440.0000.0000.0000.000
172A192LEU0-0.036-0.02029.9440.5940.5940.0000.0000.0000.000
173A193LYS10.8500.92929.54718.40518.4050.0000.0000.0000.000
174A194LEU00.0420.03825.491-0.087-0.0870.0000.0000.0000.000
175A195PRO0-0.037-0.02322.813-0.704-0.7040.0000.0000.0000.000
176A196ILE0-0.0040.01818.783-0.435-0.4350.0000.0000.0000.000
177A197LEU0-0.026-0.01014.835-0.557-0.5570.0000.0000.0000.000
178A198LYS10.9320.95110.55045.62145.6210.0000.0000.0000.000
179A199ALA00.0470.03415.9961.7431.7430.0000.0000.0000.000
180A200SER0-0.083-0.03715.098-2.663-2.6630.0000.0000.0000.000
181A201LEU00.0110.00917.1751.7391.7390.0000.0000.0000.000
182A202GLN00.0010.00914.660-1.212-1.2120.0000.0000.0000.000
183A203ARG10.8000.87917.09934.22334.2230.0000.0000.0000.000
184A204ILE00.0680.04017.828-1.530-1.5300.0000.0000.0000.000
185A205ALA00.0330.01719.8741.2451.2450.0000.0000.0000.000
186A206THR0-0.056-0.03621.6440.3040.3040.0000.0000.0000.000
187A207THR0-0.054-0.03024.8611.1161.1160.0000.0000.0000.000
188A208PRO00.0170.01520.939-0.295-0.2950.0000.0000.0000.000
189A209ILE0-0.085-0.03920.4881.3941.3940.0000.0000.0000.000
190A210GLU-1-0.870-0.91320.209-24.703-24.7030.0000.0000.0000.000
191A211LEU0-0.070-0.04116.9300.8190.8190.0000.0000.0000.000
192A212ASN00.0150.00420.034-0.810-0.8100.0000.0000.0000.000
193A213ASP-1-0.837-0.93418.337-28.823-28.8230.0000.0000.0000.000
194A214GLU-1-0.968-0.97518.020-25.294-25.2940.0000.0000.0000.000
195A215GLN0-0.012-0.02519.128-1.075-1.0750.0000.0000.0000.000
196A216MET00.0410.04913.979-1.624-1.6240.0000.0000.0000.000
197A217GLU-1-0.898-0.93014.256-34.241-34.2410.0000.0000.0000.000
198A218LEU0-0.105-0.07114.543-1.798-1.7980.0000.0000.0000.000
199A219THR0-0.049-0.03914.149-0.063-0.0630.0000.0000.0000.000
200A220GLU-1-0.859-0.93810.145-45.647-45.6470.0000.0000.0000.000
201A221LYS10.9110.96710.29433.98033.9800.0000.0000.0000.000
202A222LEU0-0.081-0.04111.944-0.656-0.6560.0000.0000.0000.000
203A223LEU00.0410.0109.462-1.957-1.9570.0000.0000.0000.000
204A224ASP-1-0.858-0.9256.145-74.249-74.2490.0000.0000.0000.000
205A225ARG10.7240.8416.34536.05236.0520.0000.0000.0000.000
206A226ILE0-0.032-0.0098.954-0.165-0.1650.0000.0000.0000.000
209A229ASP-1-0.760-0.8535.213-58.958-58.9580.0000.0000.0000.000
211A231ASP-1-0.853-0.8925.815-44.553-44.5530.0000.0000.0000.000
212A232VAL0-0.0040.0008.5724.9414.9410.0000.0000.0000.000
213A233VAL0-0.051-0.0407.557-9.596-9.5960.0000.0000.0000.000
214A234ALA00.0030.0069.237-2.056-2.0560.0000.0000.0000.000
215A235LEU00.0000.0078.3733.9133.9130.0000.0000.0000.000
216A236TYR00.0160.01310.937-0.173-0.1730.0000.0000.0000.000
217A237THR00.015-0.00813.1711.0391.0390.0000.0000.0000.000
218A238ASN00.020-0.00115.871-0.852-0.8520.0000.0000.0000.000
219A239ILE0-0.035-0.01914.3751.1581.1580.0000.0000.0000.000
220A240GLU-2-1.850-1.91116.935-61.207-61.2070.0000.0000.0000.000