FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 6RYRZ

Calculation Name: 4C47-B-Xray549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4C47

Chain ID: B

ChEMBL ID:

UniProt ID: Q8ZL65

Base Structure: X-ray

Registration Date: 2025-10-12

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230712
Total energy (hartree)
FMO2-HF: Electronic energy -1663147.22148
FMO2-HF: Nuclear repulsion 1587637.507614
FMO2-HF: Total energy -75509.713866
FMO2-MP2: Total energy -75732.144384


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:24:TYR)


Summations of interaction energy for fragment #1(B:24:TYR)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-30.332-27.8390.08-1.384-1.19-0.006
Interaction energy analysis for fragmet #1(B:24:TYR)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.844 / q_NPA : 0.916
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B26ALA00.0250.0183.107-15.555-13.0620.080-1.384-1.190-0.006
4B27ASP-1-0.856-0.9305.649-28.926-28.9260.0000.0000.0000.000
5B28LYS10.8780.9178.06821.63821.6380.0000.0000.0000.000
6B29HIS00.0240.00811.2682.5382.5380.0000.0000.0000.000
7B30LEU00.0380.0289.2471.0101.0100.0000.0000.0000.000
8B31VAL0-0.016-0.01310.4111.0891.0890.0000.0000.0000.000
9B32GLU-1-0.835-0.91013.076-17.825-17.8250.0000.0000.0000.000
10B33GLU-1-0.936-0.96315.634-17.876-17.8760.0000.0000.0000.000
11B34MET0-0.065-0.03613.0210.3210.3210.0000.0000.0000.000
12B35LYS10.9430.98216.69017.08017.0800.0000.0000.0000.000
13B36GLU-1-0.914-0.95718.887-12.843-12.8430.0000.0000.0000.000
14B37GLN00.0430.02019.6671.0581.0580.0000.0000.0000.000
15B38GLN0-0.018-0.00820.0960.2770.2770.0000.0000.0000.000
16B39LYS10.9700.98322.05613.22913.2290.0000.0000.0000.000
17B40GLU-1-0.916-0.96124.674-11.994-11.9940.0000.0000.0000.000
18B41GLN0-0.094-0.04621.7430.6280.6280.0000.0000.0000.000
19B42GLU-1-0.875-0.93326.172-11.060-11.0600.0000.0000.0000.000
20B43THR0-0.084-0.04428.0240.5850.5850.0000.0000.0000.000
21B44LYS10.9400.96627.44211.67411.6740.0000.0000.0000.000
22B45ILE00.0340.02527.4310.3690.3690.0000.0000.0000.000
23B46ASN00.010-0.00131.5430.5460.5460.0000.0000.0000.000
24B47LEU0-0.046-0.01534.2260.3840.3840.0000.0000.0000.000
25B48LEU00.003-0.00332.6740.3310.3310.0000.0000.0000.000
26B49GLU-1-0.910-0.95633.871-9.118-9.1180.0000.0000.0000.000
27B50LYS10.8430.91237.4777.8367.8360.0000.0000.0000.000
28B51GLN00.008-0.01038.8690.1510.1510.0000.0000.0000.000
29B52GLN00.0280.01639.3870.1600.1600.0000.0000.0000.000
30B53LYS10.9470.97939.6058.2218.2210.0000.0000.0000.000
31B54GLU-1-0.894-0.93643.967-7.115-7.1150.0000.0000.0000.000
32B55GLN0-0.049-0.02842.0650.2050.2050.0000.0000.0000.000
33B56GLU-1-0.864-0.92145.209-6.788-6.7880.0000.0000.0000.000
34B57ALA0-0.0050.00047.0410.1830.1830.0000.0000.0000.000
35B58LYS10.9330.95847.7176.8636.8630.0000.0000.0000.000
36B59ILE00.0350.02346.9840.1580.1580.0000.0000.0000.000
37B60ASN0-0.023-0.01949.7270.2620.2620.0000.0000.0000.000
38B61LEU0-0.055-0.02253.0070.1470.1470.0000.0000.0000.000
39B62LEU00.0100.00452.6000.1460.1460.0000.0000.0000.000
40B63GLU-1-0.898-0.94652.234-6.089-6.0890.0000.0000.0000.000
41B64LYS10.9420.97655.2385.9565.9560.0000.0000.0000.000
42B65GLN00.0060.00759.0900.0950.0950.0000.0000.0000.000
43B66GLN00.0270.01356.5570.1270.1270.0000.0000.0000.000
44B67ALA00.0150.00760.3230.0950.0950.0000.0000.0000.000
45B68THR0-0.017-0.01761.9830.1230.1230.0000.0000.0000.000
46B69ILE00.0320.02262.5150.1140.1140.0000.0000.0000.000
47B70ILE00.0220.02761.0930.1050.1050.0000.0000.0000.000
48B71ASN0-0.031-0.02465.4800.1640.1640.0000.0000.0000.000
49B72THR0-0.019-0.01667.8870.1130.1130.0000.0000.0000.000
50B73THR00.015-0.01267.7230.0870.0870.0000.0000.0000.000
51B74LYS10.9630.99269.1454.6684.6680.0000.0000.0000.000
52B75LYS10.9100.95670.9474.6294.6290.0000.0000.0000.000
53B76VAL00.0300.02673.1610.0730.0730.0000.0000.0000.000
54B77THR0-0.030-0.02671.7310.0480.0480.0000.0000.0000.000
55B78GLU-1-0.887-0.91274.789-4.112-4.1120.0000.0000.0000.000
56B79VAL00.011-0.00276.8470.0690.0690.0000.0000.0000.000
57B80VAL00.0310.01477.2850.0640.0640.0000.0000.0000.000
58B81GLY00.0300.02078.7090.0480.0480.0000.0000.0000.000
59B82ARG10.7890.85080.1504.0974.0970.0000.0000.0000.000
60B83VAL0-0.0070.00782.7770.0550.0550.0000.0000.0000.000
61B84GLU-1-0.849-0.90580.865-3.992-3.9920.0000.0000.0000.000
62B85ARG10.9040.93980.1174.0484.0480.0000.0000.0000.000
63B86LYS10.9540.98785.8333.7223.7220.0000.0000.0000.000
64B87GLN00.0340.02487.3160.0330.0330.0000.0000.0000.000
65B88ARG10.8570.91183.2523.8993.8990.0000.0000.0000.000
66B89LEU0-0.043-0.02389.3820.0190.0190.0000.0000.0000.000
67B90PHE0-0.0150.00692.6050.0400.0400.0000.0000.0000.000
68B91ASP-1-0.931-0.95588.981-3.641-3.6410.0000.0000.0000.000
69B92TYR0-0.049-0.04787.916-0.009-0.0090.0000.0000.0000.000
70B93THR00.0200.01293.855-0.026-0.0260.0000.0000.0000.000
71B94GLU-1-0.843-0.90389.071-3.721-3.7210.0000.0000.0000.000
72B95LEU00.0010.00393.6450.0070.0070.0000.0000.0000.000
73B96ASP-1-0.761-0.85994.195-3.459-3.4590.0000.0000.0000.000
74B97PRO0-0.006-0.00695.9020.0240.0240.0000.0000.0000.000
75B98SER0-0.042-0.04697.3200.0310.0310.0000.0000.0000.000
76B99GLN0-0.063-0.03596.1150.0070.0070.0000.0000.0000.000
77B100THR0-0.022-0.00198.552-0.003-0.0030.0000.0000.0000.000
78B101HIS0-0.010-0.003101.0850.0310.0310.0000.0000.0000.000
79B102TYR00.0280.006104.8170.0110.0110.0000.0000.0000.000
80B103PHE0-0.047-0.018100.765-0.040-0.0400.0000.0000.0000.000
81B104ILE00.0150.007100.6230.0350.0350.0000.0000.0000.000
82B105ILE00.0200.01699.200-0.043-0.0430.0000.0000.0000.000
83B106ASN00.0160.00299.2140.0350.0350.0000.0000.0000.000
84B107ASN00.0300.00697.567-0.018-0.0180.0000.0000.0000.000
85B108GLY0-0.028-0.00998.236-0.022-0.0220.0000.0000.0000.000
86B109ASN0-0.045-0.01699.5780.0240.0240.0000.0000.0000.000
87B110ILE00.0490.020102.5770.0350.0350.0000.0000.0000.000
88B111GLY0-0.0140.000103.034-0.036-0.0360.0000.0000.0000.000
89B112LEU00.0200.006104.1510.0360.0360.0000.0000.0000.000
90B113ALA0-0.011-0.006104.422-0.040-0.0400.0000.0000.0000.000
91B114GLY00.0370.009105.5900.0250.0250.0000.0000.0000.000
92B115ARG10.7810.877106.2052.8982.8980.0000.0000.0000.000
93B116ILE0-0.008-0.004102.1850.0210.0210.0000.0000.0000.000
94B117LEU0-0.053-0.015106.6960.0010.0010.0000.0000.0000.000
95B118SER0-0.036-0.048108.0190.0090.0090.0000.0000.0000.000
96B119ILE0-0.024-0.016102.580-0.018-0.0180.0000.0000.0000.000
97B120GLU-1-0.790-0.867105.922-3.001-3.0010.0000.0000.0000.000
98B121PRO0-0.059-0.032105.269-0.030-0.0300.0000.0000.0000.000
99B122ILE0-0.022-0.013105.3040.0410.0410.0000.0000.0000.000
100B123ASP-1-0.874-0.941105.444-3.121-3.1210.0000.0000.0000.000
101B124ASN0-0.041-0.02799.626-0.033-0.0330.0000.0000.0000.000
102B125GLY0-0.019-0.009101.044-0.041-0.0410.0000.0000.0000.000
103B126SER0-0.005-0.014101.0820.0250.0250.0000.0000.0000.000
104B127VAL0-0.013-0.012103.476-0.004-0.0040.0000.0000.0000.000
105B128ILE0-0.0010.016101.2410.0090.0090.0000.0000.0000.000
106B129HIS10.8870.949105.8782.9812.9810.0000.0000.0000.000
107B130LEU00.023-0.001105.481-0.023-0.0230.0000.0000.0000.000
108B131ASP-1-0.767-0.851109.210-2.871-2.8710.0000.0000.0000.000
109B132LEU0-0.014-0.018105.709-0.040-0.0400.0000.0000.0000.000
110B133VAL00.0080.012109.2320.0330.0330.0000.0000.0000.000
111B134ASN00.0140.001109.143-0.067-0.0670.0000.0000.0000.000
112B135LEU0-0.045-0.029105.8590.0230.0230.0000.0000.0000.000
113B136LEU0-0.0120.004106.964-0.003-0.0030.0000.0000.0000.000
114B137SER0-0.028-0.023110.8420.0140.0140.0000.0000.0000.000
115B138ILE0-0.0010.005111.3870.0330.0330.0000.0000.0000.000
116B139PRO00.0360.012113.337-0.025-0.0250.0000.0000.0000.000
117B140VAL0-0.041-0.008108.939-0.022-0.0220.0000.0000.0000.000
118B141SER00.022-0.020111.6680.0040.0040.0000.0000.0000.000
119B142ASN0-0.039-0.015110.084-0.009-0.0090.0000.0000.0000.000
120B143LEU00.0240.029105.332-0.033-0.0330.0000.0000.0000.000
121B144ALA00.0320.041103.2300.0130.0130.0000.0000.0000.000
122B145PHE0-0.003-0.005101.388-0.028-0.0280.0000.0000.0000.000
123B146ASN0-0.031-0.00696.0380.0030.0030.0000.0000.0000.000
124B147MET00.0100.00097.221-0.005-0.0050.0000.0000.0000.000
125B148THR0-0.040-0.04290.899-0.039-0.0390.0000.0000.0000.000
126B149TRP0-0.022-0.00994.2450.0040.0040.0000.0000.0000.000
127B150GLY00.0360.01291.979-0.029-0.0290.0000.0000.0000.000
128B151THR00.0420.02189.1560.0250.0250.0000.0000.0000.000
129B152LYS10.9530.98287.2223.7073.7070.0000.0000.0000.000
130B153LYS10.8780.93885.5523.7473.7470.0000.0000.0000.000
131B154PRO0-0.032-0.00482.7640.0160.0160.0000.0000.0000.000
132B155SER0-0.002-0.01982.1370.0130.0130.0000.0000.0000.000
133B156GLU-1-0.870-0.92575.359-4.364-4.3640.0000.0000.0000.000
134B157ALA0-0.003-0.01176.1150.0280.0280.0000.0000.0000.000
135B158LYS10.9360.96369.8604.6314.6310.0000.0000.0000.000
136B159ASP-1-0.854-0.92476.231-4.155-4.1550.0000.0000.0000.000
137B160LEU0-0.054-0.01679.5140.0470.0470.0000.0000.0000.000
138B161PRO0-0.006-0.01176.7410.0500.0500.0000.0000.0000.000
139B162ARG10.9650.97675.6364.2464.2460.0000.0000.0000.000
140B163TRP00.005-0.00681.2360.0110.0110.0000.0000.0000.000
141B164LYS10.9680.96882.6923.9633.9630.0000.0000.0000.000
142B165GLN0-0.042-0.01680.7490.0060.0060.0000.0000.0000.000
143B166LEU0-0.024-0.00384.8930.0260.0260.0000.0000.0000.000
144B167LEU0-0.062-0.00887.8200.0460.0460.0000.0000.0000.000
145B168LEU0-0.0100.01290.056-0.007-0.0070.0000.0000.0000.000
146B169ASN0-0.026-0.03492.6030.0180.0180.0000.0000.0000.000
147B170THR0-0.012-0.00594.8480.0080.0080.0000.0000.0000.000
148B171LYS10.8810.94697.8943.3033.3030.0000.0000.0000.000
149B172MET0-0.052-0.02499.9220.0090.0090.0000.0000.0000.000
150B173ASP-1-0.838-0.929103.438-3.165-3.1650.0000.0000.0000.000
151B174SER0-0.095-0.073105.7550.0260.0260.0000.0000.0000.000
152B175THR00.0290.011109.142-0.011-0.0110.0000.0000.0000.000
153B176ILE0-0.047-0.018111.0250.0280.0280.0000.0000.0000.000
154B177GLU-1-0.852-0.917112.297-2.791-2.7910.0000.0000.0000.000
155B178LEU0-0.073-0.042109.4630.0020.0020.0000.0000.0000.000
156B179LEU00.0860.034113.711-0.012-0.0120.0000.0000.0000.000
157B180PRO0-0.008-0.002114.402-0.017-0.0170.0000.0000.0000.000
158B181GLY0-0.026-0.009113.9390.0250.0250.0000.0000.0000.000
159B182ALA0-0.015-0.005115.1560.0090.0090.0000.0000.0000.000
160B183TRP0-0.044-0.028108.931-0.033-0.0330.0000.0000.0000.000
161B184THR00.0140.005113.4120.0380.0380.0000.0000.0000.000
162B185ASN0-0.026-0.010112.675-0.038-0.0380.0000.0000.0000.000
163B186VAL00.0310.015108.0270.0020.0020.0000.0000.0000.000
164B187THR0-0.033-0.028108.9070.0070.0070.0000.0000.0000.000
165B188LEU00.0200.016102.585-0.007-0.0070.0000.0000.0000.000
166B189THR0-0.003-0.006104.5090.0050.0050.0000.0000.0000.000
167B190LEU0-0.023-0.00899.375-0.022-0.0220.0000.0000.0000.000
168B191LYS11.0211.00898.3833.2993.2990.0000.0000.0000.000
169B192GLY00.0280.00896.721-0.035-0.0350.0000.0000.0000.000
170B193VAL0-0.033-0.01295.076-0.040-0.0400.0000.0000.0000.000
171B194SER00.0200.02597.6710.0230.0230.0000.0000.0000.000
172B195PRO00.0760.02599.195-0.038-0.0380.0000.0000.0000.000
173B196ASN00.0040.02197.7570.0080.0080.0000.0000.0000.000
174B197ASN0-0.052-0.04395.097-0.052-0.0520.0000.0000.0000.000
175B198LEU0-0.0140.00494.928-0.049-0.0490.0000.0000.0000.000
176B199LYS10.8850.93793.3683.4263.4260.0000.0000.0000.000
177B200TYR0-0.092-0.07289.749-0.035-0.0350.0000.0000.0000.000
178B201LEU00.0180.00693.6480.0180.0180.0000.0000.0000.000
179B202LYS10.8840.96589.4963.6293.6290.0000.0000.0000.000
180B203ILE00.002-0.00594.6990.0120.0120.0000.0000.0000.000
181B204GLY00.0330.01596.791-0.023-0.0230.0000.0000.0000.000
182B205ILE0-0.0020.00697.7140.0100.0100.0000.0000.0000.000
183B206ASP-1-0.881-0.93298.813-3.345-3.3450.0000.0000.0000.000
184B207MET00.0310.012100.5060.0310.0310.0000.0000.0000.000
185B208GLU-1-0.955-0.950101.518-3.192-3.1920.0000.0000.0000.000
186B209ASN0-0.017-0.018103.2590.0250.0250.0000.0000.0000.000
187B210VAL0-0.026-0.004105.4400.0280.0280.0000.0000.0000.000
188B211ILE0-0.0220.003107.998-0.001-0.0010.0000.0000.0000.000
189B212PHE0-0.052-0.045106.925-0.021-0.0210.0000.0000.0000.000
190B213ASP-2-1.758-1.852112.959-5.630-5.6300.0000.0000.0000.000