FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 6Z3JZ

Calculation Name: 3MOP-K-Xray540

Preferred Name: Interleukin-1 receptor-associated kinase-like 2

Target Type: SINGLE PROTEIN

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 3MOP

Chain ID: K

ChEMBL ID: CHEMBL4105759

UniProt ID: O43187

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 183
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -756295.512776
FMO2-HF: Nuclear repulsion 716072.687409
FMO2-HF: Total energy -40222.825367
FMO2-MP2: Total energy -40336.925574


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(K:2:ALA)


Summations of interaction energy for fragment #1(K:2:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.661-1.3851.6922.988-4.9570.022
Interaction energy analysis for fragmet #1(K:2:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.167 / q_NPA : 0.008
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4K3CYS0-0.1260.0914.261-0.0460.5860.003-0.361-0.2750.000
5K4TYR00.071-0.1023.818-2.3700.525-0.022-1.712-1.1610.004
6K4TYR0-0.0750.1006.3250.0470.0470.0000.0000.0000.000
7K5ILE00.191-0.0854.877-0.203-0.088-0.002-0.003-0.1100.000
8K5ILE0-0.1440.1468.7800.0430.0430.0000.0000.0000.000
9K6TYR00.082-0.0816.6980.1700.1700.0000.0000.0000.000
10K6TYR0-0.0960.0767.589-0.012-0.0120.0000.0000.0000.000
11K7GLN00.001-0.1273.7940.0360.0920.0000.009-0.0660.000
12K7GLN0-0.1590.0653.035-0.896-0.5340.117-0.236-0.2420.001
13K8LEU00.089-0.1443.4151.5492.4640.038-0.473-0.480-0.003
14K8LEU0-0.1230.1533.3390.059-0.1880.0130.353-0.1190.000
15K9PRO00.015-0.1124.260-0.423-0.378-0.001-0.014-0.0300.000
16K10SER00.0460.0587.392-0.281-0.2810.0000.0000.0000.000
17K10SER0-0.0360.05511.481-0.033-0.0330.0000.0000.0000.000
18K11TRP00.167-0.06210.813-0.163-0.1630.0000.0000.0000.000
19K11TRP0-0.0360.1009.3920.1490.1490.0000.0000.0000.000
20K12VAL00.063-0.0608.324-0.166-0.1660.0000.0000.0000.000
21K12VAL0-0.0750.0876.7060.0100.0100.0000.0000.0000.000
22K13LEU00.157-0.0919.812-0.232-0.2320.0000.0000.0000.000
23K13LEU0-0.1220.0809.589-0.008-0.0080.0000.0000.0000.000
24K14ASP00.099-0.10210.747-0.115-0.1150.0000.0000.0000.000
25K14ASP-1-0.999-0.87614.1590.2660.2660.0000.0000.0000.000
26K15ASP00.132-0.15213.542-0.069-0.0690.0000.0000.0000.000
27K15ASP-1-0.996-0.84312.9540.2490.2490.0000.0000.0000.000
28K16LEU00.033-0.08112.115-0.020-0.0200.0000.0000.0000.000
29K16LEU0-0.1110.05410.013-0.040-0.0400.0000.0000.0000.000
30K17CYS00.031-0.16913.487-0.071-0.0710.0000.0000.0000.000
31K17CYS0-0.1760.11113.725-0.009-0.0090.0000.0000.0000.000
32K18ARG00.117-0.09315.9050.0030.0030.0000.0000.0000.000
33K18ARG10.7931.09516.568-0.109-0.1090.0000.0000.0000.000
34K19ASN00.1910.00317.0020.0050.0050.0000.0000.0000.000
35K19ASN0-0.212-0.01816.2310.0230.0230.0000.0000.0000.000
36K20MET0-0.003-0.12217.3100.0150.0150.0000.0000.0000.000
37K20MET0-0.0270.08815.378-0.029-0.0290.0000.0000.0000.000
38K21ASP00.113-0.02818.649-0.014-0.0140.0000.0000.0000.000
39K21ASP-1-0.839-0.84519.136-0.029-0.0290.0000.0000.0000.000
40K22ALA00.134-0.07320.502-0.010-0.0100.0000.0000.0000.000
41K22ALA0-0.1300.09723.2600.0040.0040.0000.0000.0000.000
42K23LEU00.050-0.15222.1740.0130.0130.0000.0000.0000.000
43K23LEU0-0.1420.09619.839-0.003-0.0030.0000.0000.0000.000
44K24SER0-0.005-0.08223.563-0.013-0.0130.0000.0000.0000.000
45K24SER0-0.0820.04825.7150.0040.0040.0000.0000.0000.000
46K25GLU00.183-0.09625.656-0.015-0.0150.0000.0000.0000.000
47K25GLU-1-0.923-0.78428.073-0.065-0.0650.0000.0000.0000.000
48K26TRP0-0.042-0.12927.292-0.006-0.0060.0000.0000.0000.000
49K26TRP0-0.0870.07028.6340.0030.0030.0000.0000.0000.000
50K27ASP00.229-0.07324.372-0.013-0.0130.0000.0000.0000.000
51K27ASP-1-0.915-0.80723.634-0.109-0.1090.0000.0000.0000.000
52K28TRP00.018-0.08421.468-0.028-0.0280.0000.0000.0000.000
53K28TRP0-0.0210.09819.3930.0110.0110.0000.0000.0000.000
54K29MET00.089-0.06322.106-0.029-0.0290.0000.0000.0000.000
55K29MET0-0.0740.09225.6180.0070.0070.0000.0000.0000.000
56K30GLU00.010-0.19224.370-0.004-0.0040.0000.0000.0000.000
57K30GLU-1-0.900-0.79723.177-0.187-0.1870.0000.0000.0000.000
58K31PHE00.139-0.07319.668-0.016-0.0160.0000.0000.0000.000
59K31PHE0-0.1060.07614.540-0.008-0.0080.0000.0000.0000.000
60K32ALA00.082-0.11319.722-0.044-0.0440.0000.0000.0000.000
61K32ALA0-0.1210.10321.3900.0060.0060.0000.0000.0000.000
62K33SER0-0.045-0.12721.013-0.022-0.0220.0000.0000.0000.000
63K33SER0-0.0050.09424.4180.0050.0050.0000.0000.0000.000
64K34TYR00.016-0.09221.4660.0110.0110.0000.0000.0000.000
65K34TYR0-0.0770.10220.487-0.001-0.0010.0000.0000.0000.000
66K35VAL00.073-0.11118.370-0.037-0.0370.0000.0000.0000.000
67K35VAL0-0.1580.10316.422-0.002-0.0020.0000.0000.0000.000
68K36ILE00.041-0.12619.061-0.008-0.0080.0000.0000.0000.000
69K36ILE0-0.0820.08718.694-0.007-0.0070.0000.0000.0000.000
70K37THR0-0.016-0.03721.4420.0090.0090.0000.0000.0000.000
71K37THR0-0.063-0.00321.2880.0070.0070.0000.0000.0000.000
72K38ASP00.085-0.09023.190-0.003-0.0030.0000.0000.0000.000
73K38ASP-1-0.863-0.81126.861-0.145-0.1450.0000.0000.0000.000
74K39LEU00.164-0.10726.936-0.001-0.0010.0000.0000.0000.000
75K39LEU0-0.1350.11130.1060.0010.0010.0000.0000.0000.000
76K40THR00.031-0.05329.3180.0030.0030.0000.0000.0000.000
77K40THR0-0.0100.06230.0860.0040.0040.0000.0000.0000.000
78K41GLN00.066-0.11225.4940.0150.0150.0000.0000.0000.000
79K41GLN0-0.0910.07224.6150.0010.0010.0000.0000.0000.000
80K42LEU00.120-0.12724.8410.0070.0070.0000.0000.0000.000
81K42LEU0-0.0800.14024.1330.0000.0000.0000.0000.0000.000
82K43ARG00.056-0.10325.8550.0060.0060.0000.0000.0000.000
83K43ARG10.8611.08829.7090.0880.0880.0000.0000.0000.000
84K44LYS00.172-0.04026.8300.0110.0110.0000.0000.0000.000
85K44LYS10.8311.03122.8820.0940.0940.0000.0000.0000.000
86K45ILE0-0.023-0.09322.9840.0180.0180.0000.0000.0000.000
87K45ILE0-0.0710.07919.844-0.004-0.0040.0000.0000.0000.000
88K46LYS00.190-0.05923.802-0.001-0.0010.0000.0000.0000.000
89K46LYS10.7531.01326.5340.0820.0820.0000.0000.0000.000
90K47SER00.047-0.07226.3110.0070.0070.0000.0000.0000.000
91K47SER0-0.0710.06127.8930.0040.0040.0000.0000.0000.000
92K48MET00.038-0.09924.7300.0090.0090.0000.0000.0000.000
93K48MET0-0.1140.06323.373-0.005-0.0050.0000.0000.0000.000
94K49GLU00.166-0.09325.0860.0120.0120.0000.0000.0000.000
95K49GLU-1-0.958-0.84825.495-0.041-0.0410.0000.0000.0000.000
96K50TRP0-0.056-0.10426.0380.0110.0110.0000.0000.0000.000
97K50TRP0-0.1170.08330.4450.0030.0030.0000.0000.0000.000
98K51VAL00.089-0.09627.8250.0030.0030.0000.0000.0000.000
99K51VAL0-0.0600.08526.5320.0010.0010.0000.0000.0000.000
100K52GLN0-0.011-0.12926.968-0.001-0.0010.0000.0000.0000.000
101K52GLN0-0.0960.07127.3550.0030.0030.0000.0000.0000.000
102K53GLY00.081-0.06925.2400.0070.0070.0000.0000.0000.000
103K54VAL00.047-0.00921.8360.0210.0210.0000.0000.0000.000
104K54VAL0-0.0920.11421.6290.0000.0000.0000.0000.0000.000
105K55SER00.194-0.00718.534-0.015-0.0150.0000.0000.0000.000
106K55SER0-0.0910.01617.043-0.010-0.0100.0000.0000.0000.000
107K56ILE00.081-0.11519.101-0.004-0.0040.0000.0000.0000.000
108K56ILE0-0.0760.17620.620-0.002-0.0020.0000.0000.0000.000
109K57THR0-0.057-0.16416.739-0.027-0.0270.0000.0000.0000.000
110K57THR00.0140.15115.839-0.007-0.0070.0000.0000.0000.000
111K58ARG00.100-0.09614.948-0.064-0.0640.0000.0000.0000.000
112K58ARG10.8561.09912.767-0.111-0.1110.0000.0000.0000.000
113K59GLU00.085-0.12315.344-0.033-0.0330.0000.0000.0000.000
114K59GLU-1-1.004-0.82418.877-0.006-0.0060.0000.0000.0000.000
115K60LEU00.137-0.15817.519-0.014-0.0140.0000.0000.0000.000
116K60LEU0-0.1100.11716.8600.0010.0010.0000.0000.0000.000
117K61LEU00.002-0.16412.870-0.048-0.0480.0000.0000.0000.000
118K61LEU0-0.0970.13411.796-0.015-0.0150.0000.0000.0000.000
119K62TRP00.151-0.09512.573-0.095-0.0950.0000.0000.0000.000
120K62TRP0-0.1150.09813.307-0.009-0.0090.0000.0000.0000.000
121K63TRP00.038-0.10513.611-0.015-0.0150.0000.0000.0000.000
122K63TRP0-0.0420.09617.7970.0050.0050.0000.0000.0000.000
123K64TRP00.002-0.15314.2820.0260.0260.0000.0000.0000.000
124K64TRP00.0000.12113.231-0.033-0.0330.0000.0000.0000.000
125K65GLY0-0.004-0.10111.106-0.080-0.0800.0000.0000.0000.000
126K66MET00.099-0.04211.952-0.052-0.0520.0000.0000.0000.000
127K66MET0-0.1140.13515.1200.0220.0220.0000.0000.0000.000
128K67ARG0-0.021-0.10814.5260.0380.0380.0000.0000.0000.000
129K67ARG10.8071.03315.6240.3330.3330.0000.0000.0000.000
130K68GLN00.058-0.07311.959-0.014-0.0140.0000.0000.0000.000
131K68GLN0-0.0570.12611.681-0.028-0.0280.0000.0000.0000.000
132K69ALA00.159-0.15511.727-0.084-0.0840.0000.0000.0000.000
133K69ALA0-0.0790.12711.5660.0100.0100.0000.0000.0000.000
134K70THR00.045-0.0438.429-0.056-0.0560.0000.0000.0000.000
135K70THR0-0.082-0.0248.521-0.067-0.0670.0000.0000.0000.000
136K71VAL00.143-0.0955.0410.6330.676-0.002-0.002-0.0390.000
137K71VAL0-0.0520.1323.846-0.174-0.1060.0040.004-0.0760.000
138K72GLN00.072-0.1096.5670.2360.2360.0000.0000.0000.000
139K72GLN0-0.0540.1046.204-0.008-0.0080.0000.0000.0000.000
140K73GLN00.117-0.0858.9590.2300.2300.0000.0000.0000.000
141K73GLN0-0.0070.14911.405-0.109-0.1090.0000.0000.0000.000
142K74LEU00.113-0.1039.7490.2450.2450.0000.0000.0000.000
143K74LEU0-0.0840.1239.054-0.024-0.0240.0000.0000.0000.000
144K75VAL00.068-0.1419.6660.1890.1890.0000.0000.0000.000
145K75VAL0-0.0920.1298.374-0.009-0.0090.0000.0000.0000.000
146K76ASP00.177-0.05711.0880.1420.1420.0000.0000.0000.000
147K76ASP-1-1.068-0.87813.390-0.766-0.7660.0000.0000.0000.000
148K77LEU0-0.004-0.12713.9250.0990.0990.0000.0000.0000.000
149K77LEU0-0.0900.08915.069-0.009-0.0090.0000.0000.0000.000
150K78LEU00.035-0.10414.3090.0670.0670.0000.0000.0000.000
151K78LEU0-0.0980.10912.1980.0050.0050.0000.0000.0000.000
152K79CYS00.079-0.10615.4590.0550.0550.0000.0000.0000.000
153K79CYS0-0.1270.08714.9410.0060.0060.0000.0000.0000.000
154K80ARG00.114-0.05917.5680.0520.0520.0000.0000.0000.000
155K80ARG10.8191.06816.5950.4590.4590.0000.0000.0000.000
156K81LEU00.048-0.17419.3640.0160.0160.0000.0000.0000.000
157K81LEU0-0.0970.14618.988-0.008-0.0080.0000.0000.0000.000
158K82GLU00.046-0.14020.5090.0080.0080.0000.0000.0000.000
159K82GLU-1-0.913-0.81122.820-0.206-0.2060.0000.0000.0000.000
160K83LEU00.045-0.11518.6240.0420.0420.0000.0000.0000.000
161K83LEU0-0.0650.11217.940-0.005-0.0050.0000.0000.0000.000
162K84TYR00.179-0.10916.850-0.038-0.0380.0000.0000.0000.000
163K84TYR0-0.1300.10718.128-0.006-0.0060.0000.0000.0000.000
164K85ARG00.162-0.06716.346-0.013-0.0130.0000.0000.0000.000
165K85ARG10.8581.06419.4330.0990.0990.0000.0000.0000.000
166K86ALA0-0.011-0.14615.0760.0620.0620.0000.0000.0000.000
167K86ALA0-0.0440.08314.132-0.007-0.0070.0000.0000.0000.000
168K87ALA00.150-0.08511.6940.0280.0280.0000.0000.0000.000
169K87ALA0-0.0110.12112.510-0.011-0.0110.0000.0000.0000.000
170K88GLN0-0.054-0.13411.850-0.068-0.0680.0000.0000.0000.000
171K88GLN0-0.0690.08815.610-0.013-0.0130.0000.0000.0000.000
172K89ILE00.119-0.10411.9570.0380.0380.0000.0000.0000.000
173K89ILE0-0.0910.14710.8300.0020.0020.0000.0000.0000.000
174K90ILE0-0.034-0.0827.9920.2650.2650.0000.0000.0000.000
175K90ILE0-0.0710.0837.152-0.033-0.0330.0000.0000.0000.000
176K91LEU00.148-0.1167.668-0.451-0.4510.0000.0000.0000.000
177K91LEU0-0.0830.1189.949-0.014-0.0140.0000.0000.0000.000
178K92ASN0-0.067-0.1689.7890.0530.0530.0000.0000.0000.000
179K92ASN0-0.0520.12110.9580.0170.0170.0000.0000.0000.000
180K93TRP00.073-0.0986.1750.2180.2180.0000.0000.0000.000
181K93TRP0-0.0770.1022.571-0.486-5.1281.5455.432-2.3350.020
182K94LYS0-0.114-0.1464.2260.2630.297-0.001-0.009-0.0240.000
183K94LYS11.0461.0427.9150.7730.7730.0000.0000.0000.000