FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: JK119

Calculation Name: 1U2C-A-Xray549

Preferred Name: Dystroglycan

Target Type: SINGLE PROTEIN

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1U2C

Chain ID: A

ChEMBL ID: CHEMBL3739252

UniProt ID: Q62165

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 227
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2438641.727705
FMO2-HF: Nuclear repulsion 2352719.595135
FMO2-HF: Total energy -85922.13257
FMO2-MP2: Total energy -86171.868653


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:58:ALA)


Summations of interaction energy for fragment #1(A:58:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-44.937-43.507-0.017-0.563-0.851-0.001
Interaction energy analysis for fragmet #1(A:58:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.847 / q_NPA : 0.906
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A60PRO00.0310.0273.8562.4843.914-0.017-0.563-0.851-0.001
4A61THR00.0270.0076.4271.4471.4470.0000.0000.0000.000
5A62VAL0-0.0040.0079.5111.0981.0980.0000.0000.0000.000
6A63VAL00.0270.01412.8800.3190.3190.0000.0000.0000.000
7A64GLY0-0.0050.01615.9310.4660.4660.0000.0000.0000.000
8A65ILE0-0.001-0.00919.538-0.013-0.0130.0000.0000.0000.000
9A66PRO0-0.029-0.01122.3290.0670.0670.0000.0000.0000.000
10A67ASP-1-0.786-0.88625.835-11.469-11.4690.0000.0000.0000.000
11A68GLY0-0.041-0.01828.5250.1710.1710.0000.0000.0000.000
12A69THR0-0.015-0.00931.3430.1330.1330.0000.0000.0000.000
13A70ALA00.0190.00135.126-0.053-0.0530.0000.0000.0000.000
14A71VAL00.0350.02137.2880.0530.0530.0000.0000.0000.000
15A72VAL0-0.021-0.00141.0310.0160.0160.0000.0000.0000.000
16A73GLY0-0.001-0.00643.2920.1480.1480.0000.0000.0000.000
17A74ARG10.7560.87542.2087.3887.3880.0000.0000.0000.000
18A75SER0-0.036-0.02939.732-0.218-0.2180.0000.0000.0000.000
19A76PHE00.0250.01331.132-0.038-0.0380.0000.0000.0000.000
20A77ARG10.9010.92433.1009.1709.1700.0000.0000.0000.000
21A78VAL00.0030.01928.2770.0370.0370.0000.0000.0000.000
22A79SER00.0080.00926.339-0.122-0.1220.0000.0000.0000.000
23A80ILE0-0.0010.00221.632-0.156-0.1560.0000.0000.0000.000
24A81PRO00.0350.02419.577-0.023-0.0230.0000.0000.0000.000
25A82THR00.017-0.03318.529-1.041-1.0410.0000.0000.0000.000
26A83ASP-1-0.885-0.94217.118-15.850-15.8500.0000.0000.0000.000
27A84LEU0-0.067-0.03314.763-0.932-0.9320.0000.0000.0000.000
28A85ILE0-0.053-0.01413.589-1.357-1.3570.0000.0000.0000.000
29A86ALA00.0030.00213.261-1.260-1.2600.0000.0000.0000.000
30A87SER0-0.048-0.04510.7460.3230.3230.0000.0000.0000.000
31A88SER0-0.008-0.02612.8921.2381.2380.0000.0000.0000.000
32A89GLY0-0.0020.01113.8281.0631.0630.0000.0000.0000.000
33A90GLU-1-0.922-0.94510.766-25.753-25.7530.0000.0000.0000.000
34A91ILE0-0.013-0.00614.8960.8550.8550.0000.0000.0000.000
35A92ILE00.0350.01817.215-0.539-0.5390.0000.0000.0000.000
36A93LYS10.8280.90919.04312.84112.8410.0000.0000.0000.000
37A94VAL00.0290.02020.633-0.424-0.4240.0000.0000.0000.000
38A95SER0-0.062-0.03423.4430.2730.2730.0000.0000.0000.000
39A96ALA00.0580.02425.505-0.158-0.1580.0000.0000.0000.000
40A97ALA00.0130.00424.330-0.242-0.2420.0000.0000.0000.000
41A98GLY0-0.021-0.01024.1250.3920.3920.0000.0000.0000.000
42A99LYS10.8830.94325.63110.21110.2110.0000.0000.0000.000
43A100GLU-1-0.883-0.92725.537-11.155-11.1550.0000.0000.0000.000
44A101ALA0-0.004-0.00526.847-0.136-0.1360.0000.0000.0000.000
45A102LEU00.0430.01727.699-0.306-0.3060.0000.0000.0000.000
46A103PRO00.0060.00829.9590.2340.2340.0000.0000.0000.000
47A104SER0-0.016-0.01133.137-0.055-0.0550.0000.0000.0000.000
48A105TRP0-0.039-0.01833.8090.1920.1920.0000.0000.0000.000
49A106LEU0-0.010-0.00530.4650.0050.0050.0000.0000.0000.000
50A107HIS0-0.019-0.01532.2900.1150.1150.0000.0000.0000.000
51A108TRP00.0320.00823.475-0.102-0.1020.0000.0000.0000.000
52A109ASP-1-0.818-0.87529.047-10.046-10.0460.0000.0000.0000.000
53A110PRO0-0.068-0.05224.802-0.260-0.2600.0000.0000.0000.000
54A111HIS0-0.010-0.00125.077-0.540-0.5400.0000.0000.0000.000
55A112SER0-0.071-0.05827.480-0.079-0.0790.0000.0000.0000.000
56A113HIS00.0240.03322.2260.1730.1730.0000.0000.0000.000
57A114ILE0-0.0100.00025.988-0.059-0.0590.0000.0000.0000.000
58A115LEU0-0.0120.00327.183-0.009-0.0090.0000.0000.0000.000
59A116GLU-1-0.794-0.89929.492-8.779-8.7790.0000.0000.0000.000
60A117GLY00.014-0.01333.354-0.092-0.0920.0000.0000.0000.000
61A118LEU0-0.0250.01236.1170.0920.0920.0000.0000.0000.000
62A119PRO00.0210.02838.3750.0650.0650.0000.0000.0000.000
63A120LEU00.012-0.00840.0630.2420.2420.0000.0000.0000.000
64A121ASP-1-0.786-0.89042.369-6.966-6.9660.0000.0000.0000.000
65A122THR0-0.018-0.02142.4480.0070.0070.0000.0000.0000.000
66A123ASP-1-0.832-0.90938.144-8.099-8.0990.0000.0000.0000.000
67A124LYS10.8360.91038.2946.8026.8020.0000.0000.0000.000
68A125GLY00.0100.01637.764-0.019-0.0190.0000.0000.0000.000
69A126VAL00.0030.00131.386-0.099-0.0990.0000.0000.0000.000
70A127HIS0-0.033-0.01931.321-0.270-0.2700.0000.0000.0000.000
71A128TYR00.0280.00226.486-0.146-0.1460.0000.0000.0000.000
72A129ILE0-0.032-0.01424.7460.1560.1560.0000.0000.0000.000
73A130SER0-0.0060.00121.048-0.345-0.3450.0000.0000.0000.000
74A131VAL00.0190.00618.9360.3970.3970.0000.0000.0000.000
75A132SER0-0.033-0.01616.433-0.656-0.6560.0000.0000.0000.000
76A133ALA00.0550.04612.9890.8680.8680.0000.0000.0000.000
77A134ALA00.0160.00013.575-0.873-0.8730.0000.0000.0000.000
78A135ARG10.9721.0029.19925.12525.1250.0000.0000.0000.000
79A136LEU00.0120.01513.3070.3990.3990.0000.0000.0000.000
80A137GLY0-0.014-0.00414.615-1.292-1.2920.0000.0000.0000.000
81A138ALA0-0.004-0.01815.9890.7550.7550.0000.0000.0000.000
82A139ASN0-0.0110.01018.4790.2790.2790.0000.0000.0000.000
83A140GLY00.0210.01419.9640.5520.5520.0000.0000.0000.000
84A141SER0-0.050-0.03117.9380.0210.0210.0000.0000.0000.000
85A142HIS00.0560.01316.805-0.757-0.7570.0000.0000.0000.000
86A143VAL0-0.022-0.00511.1940.1950.1950.0000.0000.0000.000
87A144PRO0-0.0060.00013.049-0.593-0.5930.0000.0000.0000.000
88A145GLN0-0.048-0.0216.553-0.641-0.6410.0000.0000.0000.000
89A146THR0-0.022-0.0229.549-1.638-1.6380.0000.0000.0000.000
90A147SER0-0.021-0.03212.0261.6721.6720.0000.0000.0000.000
91A148SER0-0.016-0.00815.509-0.904-0.9040.0000.0000.0000.000
92A149VAL0-0.048-0.03217.9930.6320.6320.0000.0000.0000.000
93A150PHE00.0070.01421.452-0.208-0.2080.0000.0000.0000.000
94A151SER0-0.074-0.04724.5640.3280.3280.0000.0000.0000.000
95A152ILE00.0240.00328.349-0.049-0.0490.0000.0000.0000.000
96A153GLU-1-0.892-0.91531.477-8.527-8.5270.0000.0000.0000.000
97A154VAL0-0.057-0.01734.9410.0740.0740.0000.0000.0000.000
98A155TYR00.004-0.01837.2180.1680.1680.0000.0000.0000.000
99A156PRO00.016-0.02740.9560.0520.0520.0000.0000.0000.000
100A157GLU-1-0.892-0.91844.488-6.483-6.4830.0000.0000.0000.000
101A158ASP-1-0.869-0.92744.762-6.894-6.8940.0000.0000.0000.000
102A159HIS0-0.088-0.07845.612-0.091-0.0910.0000.0000.0000.000
103A160ASN-1-0.833-0.88841.117-7.398-7.3980.0000.0000.0000.000
104A179ALA10.8540.91950.5106.2806.2800.0000.0000.0000.000
105A180CYS00.0060.01652.103-0.118-0.1180.0000.0000.0000.000
106A181ALA00.0440.02355.261-0.085-0.0850.0000.0000.0000.000
107A182ALA00.0110.00456.6070.0040.0040.0000.0000.0000.000
108A183ASP-1-0.904-0.95457.613-5.291-5.2910.0000.0000.0000.000
109A184GLU-1-0.936-0.97359.311-5.287-5.2870.0000.0000.0000.000
110A185PRO0-0.027-0.01758.728-0.102-0.1020.0000.0000.0000.000
111A186VAL00.0380.01554.0850.0060.0060.0000.0000.0000.000
112A187THR0-0.029-0.01757.3780.0490.0490.0000.0000.0000.000
113A188VAL0-0.023-0.01954.545-0.104-0.1040.0000.0000.0000.000
114A189LEU00.0230.02556.2460.1330.1330.0000.0000.0000.000
115A190THR0-0.022-0.02855.045-0.170-0.1700.0000.0000.0000.000
116A191VAL00.0140.00154.7430.1370.1370.0000.0000.0000.000
117A192ILE0-0.026-0.00555.119-0.111-0.1110.0000.0000.0000.000
118A193LEU00.008-0.00351.7410.0620.0620.0000.0000.0000.000
119A194ASP-1-0.788-0.89955.129-5.578-5.5780.0000.0000.0000.000
120A195ALA00.0310.00050.247-0.065-0.0650.0000.0000.0000.000
121A196ASP-1-0.792-0.88248.989-6.370-6.3700.0000.0000.0000.000
122A197LEU00.014-0.00245.584-0.117-0.1170.0000.0000.0000.000
123A198THR0-0.071-0.05944.512-0.195-0.1950.0000.0000.0000.000
124A199LYS10.8190.89844.2246.0246.0240.0000.0000.0000.000
125A200MET0-0.079-0.00644.1170.0070.0070.0000.0000.0000.000
126A201THR00.034-0.01038.574-0.161-0.1610.0000.0000.0000.000
127A202PRO00.0450.02436.1390.1470.1470.0000.0000.0000.000
128A203LYS10.8680.92935.2888.8278.8270.0000.0000.0000.000
129A204GLN00.0510.04138.6200.0130.0130.0000.0000.0000.000
130A205ARG10.8260.91940.1067.7677.7670.0000.0000.0000.000
131A206ILE00.0090.01337.7660.1320.1320.0000.0000.0000.000
132A207ASP-1-0.824-0.91241.202-7.110-7.1100.0000.0000.0000.000
133A208LEU0-0.011-0.00243.2100.1530.1530.0000.0000.0000.000
134A209LEU00.0190.00043.1320.1410.1410.0000.0000.0000.000
135A210ASN0-0.047-0.03042.6840.0860.0860.0000.0000.0000.000
136A211ARG10.7990.89244.6946.8816.8810.0000.0000.0000.000
137A212MET00.0240.02148.0980.1920.1920.0000.0000.0000.000
138A213GLN00.0190.01243.9290.0540.0540.0000.0000.0000.000
139A214SER0-0.033-0.00649.1950.0240.0240.0000.0000.0000.000
140A215PHE0-0.015-0.01451.9610.1170.1170.0000.0000.0000.000
141A216SER0-0.008-0.05150.1660.0930.0930.0000.0000.0000.000
142A217GLU-1-0.979-0.97151.520-5.735-5.7350.0000.0000.0000.000
143A218VAL0-0.061-0.02748.219-0.058-0.0580.0000.0000.0000.000
144A219GLU-1-0.840-0.94243.285-7.374-7.3740.0000.0000.0000.000
145A220LEU00.007-0.00840.6180.0280.0280.0000.0000.0000.000
146A221HIS0-0.0080.01640.306-0.093-0.0930.0000.0000.0000.000
147A222ASN0-0.034-0.01442.356-0.034-0.0340.0000.0000.0000.000
148A223MET0-0.0740.01845.7500.2710.2710.0000.0000.0000.000
149A224LYS10.8480.92545.8176.1826.1820.0000.0000.0000.000
150A225LEU0-0.045-0.02845.1710.1710.1710.0000.0000.0000.000
151A226VAL00.0540.03146.404-0.164-0.1640.0000.0000.0000.000
152A227PRO00.010-0.00747.7260.1040.1040.0000.0000.0000.000
153A228VAL0-0.0360.01050.6980.0540.0540.0000.0000.0000.000
154A229VAL00.0470.02552.769-0.040-0.0400.0000.0000.0000.000
155A230ASN0-0.055-0.04555.4160.0900.0900.0000.0000.0000.000
156A231ASN00.0300.01357.8560.1030.1030.0000.0000.0000.000
157A232ARG10.9530.99059.0605.3805.3800.0000.0000.0000.000
158A233LEU00.0120.00458.329-0.067-0.0670.0000.0000.0000.000
159A234PHE00.0160.00360.6150.0410.0410.0000.0000.0000.000
160A235ASP-1-0.774-0.84660.989-5.252-5.2520.0000.0000.0000.000
161A236MET0-0.011-0.01363.0180.0290.0290.0000.0000.0000.000
162A237SER0-0.078-0.05963.5380.0450.0450.0000.0000.0000.000
163A238ALA0-0.040-0.01863.642-0.024-0.0240.0000.0000.0000.000
164A239PHE0-0.005-0.00263.5820.0890.0890.0000.0000.0000.000
165A240MET0-0.0270.00165.0160.0620.0620.0000.0000.0000.000
166A241ALA00.020-0.00164.550-0.091-0.0910.0000.0000.0000.000
167A242GLY00.0000.00664.5350.0930.0930.0000.0000.0000.000
168A243PRO0-0.044-0.00964.114-0.068-0.0680.0000.0000.0000.000
169A244GLY00.0300.02461.661-0.041-0.0410.0000.0000.0000.000
170A245ASN00.0680.02259.4580.0560.0560.0000.0000.0000.000
171A246ALA0-0.048-0.01860.3410.0750.0750.0000.0000.0000.000
172A247LYS10.9250.94762.4444.9034.9030.0000.0000.0000.000
173A248LYS10.8810.93763.1984.8764.8760.0000.0000.0000.000
174A249VAL00.0230.02458.386-0.033-0.0330.0000.0000.0000.000
175A250VAL0-0.052-0.03056.8910.0820.0820.0000.0000.0000.000
176A251GLU-1-0.857-0.90452.800-6.035-6.0350.0000.0000.0000.000
177A252ASN0-0.091-0.05752.9550.1420.1420.0000.0000.0000.000
178A253GLY00.0140.01954.1800.0950.0950.0000.0000.0000.000
179A254ALA0-0.031-0.02550.577-0.107-0.1070.0000.0000.0000.000
180A255LEU0-0.013-0.00751.9010.1480.1480.0000.0000.0000.000
181A256LEU00.0270.01649.135-0.131-0.1310.0000.0000.0000.000
182A257SER0-0.040-0.02350.8690.1380.1380.0000.0000.0000.000
183A258TRP00.0890.03650.673-0.166-0.1660.0000.0000.0000.000
184A259LYS10.9150.96951.8666.1136.1130.0000.0000.0000.000
185A260LEU00.0040.00453.767-0.031-0.0310.0000.0000.0000.000
186A261GLY0-0.016-0.02856.6140.0050.0050.0000.0000.0000.000
187A263SER00.0360.01659.2120.0780.0780.0000.0000.0000.000
188A264LEU0-0.0160.01760.1640.0880.0880.0000.0000.0000.000
189A265ASN00.0310.01563.7330.0500.0500.0000.0000.0000.000
190A266GLN00.064-0.00166.268-0.033-0.0330.0000.0000.0000.000
191A267ASN0-0.044-0.02067.6880.0050.0050.0000.0000.0000.000
192A268SER0-0.044-0.01364.809-0.002-0.0020.0000.0000.0000.000
193A269VAL0-0.0150.00362.142-0.099-0.0990.0000.0000.0000.000
194A270PRO00.0250.01858.8320.0640.0640.0000.0000.0000.000
195A271ASP-1-0.803-0.88961.943-4.992-4.9920.0000.0000.0000.000
196A272ILE00.0520.03159.873-0.084-0.0840.0000.0000.0000.000
197A273ARG10.8610.90161.8304.8654.8650.0000.0000.0000.000
198A274GLY00.0290.01959.2830.0080.0080.0000.0000.0000.000
199A275VAL00.008-0.00156.973-0.088-0.0880.0000.0000.0000.000
200A276GLU-1-0.876-0.93459.372-4.848-4.8480.0000.0000.0000.000
201A277THR0-0.014-0.01462.9570.0330.0330.0000.0000.0000.000
202A278PRO00.0420.00958.8800.0210.0210.0000.0000.0000.000
203A279ALA00.0030.01559.980-0.043-0.0430.0000.0000.0000.000
204A280ARG10.8340.92060.8894.7574.7570.0000.0000.0000.000
205A281GLU-1-0.953-0.97863.218-4.907-4.9070.0000.0000.0000.000
206A282GLY0-0.056-0.01560.5240.0030.0030.0000.0000.0000.000
207A283ALA00.0340.03158.840-0.105-0.1050.0000.0000.0000.000
208A284MET00.0160.01455.259-0.111-0.1110.0000.0000.0000.000
209A285SER0-0.074-0.04954.782-0.096-0.0960.0000.0000.0000.000
210A286ALA0-0.017-0.00954.394-0.098-0.0980.0000.0000.0000.000
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