FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

tag_button

FMODB ID: KQQL3

Calculation Name: 1N0W-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1N0W

Chain ID: A

ChEMBL ID:

UniProt ID: P51587

Base Structure: X-ray

Registration Date: 2025-10-06

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 210
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2443562.134482
FMO2-HF: Nuclear repulsion 2361042.377983
FMO2-HF: Total energy -82519.756499
FMO2-MP2: Total energy -82755.87988


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:98:GLU)


Summations of interaction energy for fragment #1(A:98:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-7.028-5.445-0.014-0.647-0.923-0.002
Interaction energy analysis for fragmet #1(A:98:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.108 / q_NPA : -0.066
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A100ILE00.0100.0123.8042.3223.905-0.014-0.647-0.923-0.002
4A101GLN0-0.034-0.0316.2300.0440.0440.0000.0000.0000.000
5A102ILE0-0.031-0.0039.4950.2130.2130.0000.0000.0000.000
6A103THR0-0.012-0.02712.6790.2430.2430.0000.0000.0000.000
7A104THR0-0.034-0.06515.739-0.073-0.0730.0000.0000.0000.000
8A105GLY00.0080.00818.8750.0190.0190.0000.0000.0000.000
9A106SER0-0.125-0.07720.7630.0830.0830.0000.0000.0000.000
10A107LYS11.0290.99519.733-0.015-0.0150.0000.0000.0000.000
11A108GLU-1-0.845-0.90620.0720.2550.2550.0000.0000.0000.000
12A109LEU0-0.016-0.01220.0790.0470.0470.0000.0000.0000.000
13A110ASP-1-0.691-0.80416.072-0.552-0.5520.0000.0000.0000.000
14A111LYS10.7990.87816.192-0.195-0.1950.0000.0000.0000.000
15A112LEU0-0.065-0.02517.8120.1150.1150.0000.0000.0000.000
16A113LEU0-0.032-0.02215.1950.0290.0290.0000.0000.0000.000
17A114GLN0-0.038-0.01013.0490.2780.2780.0000.0000.0000.000
18A115GLY00.0050.00611.7830.3750.3750.0000.0000.0000.000
19A116GLY0-0.021-0.00412.846-0.138-0.1380.0000.0000.0000.000
20A117ILE0-0.029-0.03113.3390.0510.0510.0000.0000.0000.000
21A118GLU-1-0.824-0.8778.407-1.573-1.5730.0000.0000.0000.000
22A119THR0-0.044-0.0246.523-0.343-0.3430.0000.0000.0000.000
23A120GLY0-0.003-0.0067.088-1.478-1.4780.0000.0000.0000.000
24A121SER0-0.076-0.0548.1160.6620.6620.0000.0000.0000.000
25A122ILE0-0.027-0.01511.223-0.051-0.0510.0000.0000.0000.000
26A123THR00.0030.00114.7130.2840.2840.0000.0000.0000.000
27A124GLU-1-0.791-0.89616.987-0.732-0.7320.0000.0000.0000.000
28A125MET0-0.018-0.01020.6860.1360.1360.0000.0000.0000.000
29A126PHE0-0.038-0.01723.690-0.008-0.0080.0000.0000.0000.000
30A127GLY00.0490.00527.0950.0430.0430.0000.0000.0000.000
31A128GLU-1-0.876-0.92929.767-0.397-0.3970.0000.0000.0000.000
32A129PHE00.0400.02331.590-0.009-0.0090.0000.0000.0000.000
33A130ARG10.9050.94832.6320.3370.3370.0000.0000.0000.000
34A131THR0-0.001-0.01530.1670.0140.0140.0000.0000.0000.000
35A132GLY00.0740.02627.8600.0310.0310.0000.0000.0000.000
36A133LYS10.8840.96025.3800.5300.5300.0000.0000.0000.000
37A134THR00.021-0.01125.053-0.035-0.0350.0000.0000.0000.000
38A135GLN0-0.022-0.00626.496-0.036-0.0360.0000.0000.0000.000
39A136ILE00.0470.03421.230-0.023-0.0230.0000.0000.0000.000
40A137CYS0-0.028-0.00721.786-0.092-0.0920.0000.0000.0000.000
41A138HIS0-0.009-0.01122.372-0.078-0.0780.0000.0000.0000.000
42A139THR00.0130.00021.3480.0140.0140.0000.0000.0000.000
43A140LEU00.0330.02116.618-0.027-0.0270.0000.0000.0000.000
44A141ALA0-0.041-0.01918.434-0.167-0.1670.0000.0000.0000.000
45A142VAL00.0030.01020.717-0.036-0.0360.0000.0000.0000.000
46A143THR0-0.006-0.02617.055-0.115-0.1150.0000.0000.0000.000
47A144CYS0-0.018-0.01414.551-0.046-0.0460.0000.0000.0000.000
48A145GLN0-0.027-0.02014.414-0.262-0.2620.0000.0000.0000.000
49A146LEU0-0.065-0.00515.8260.0830.0830.0000.0000.0000.000
50A147PRO00.0310.00213.783-0.292-0.2920.0000.0000.0000.000
51A148ILE00.0110.0047.2660.1410.1410.0000.0000.0000.000
52A149ASP-1-0.941-0.97011.085-0.466-0.4660.0000.0000.0000.000
53A150ARG10.7890.88613.1610.8600.8600.0000.0000.0000.000
54A151GLY00.0210.01812.4620.0450.0450.0000.0000.0000.000
55A152GLY00.0160.00612.968-0.074-0.0740.0000.0000.0000.000
56A153GLY00.0210.00510.597-0.308-0.3080.0000.0000.0000.000
57A154GLU-1-0.881-0.92010.801-3.176-3.1760.0000.0000.0000.000
58A155GLY0-0.021-0.02112.776-0.300-0.3000.0000.0000.0000.000
59A156LYS10.9470.98214.5021.7971.7970.0000.0000.0000.000
60A157ALA00.0400.01616.598-0.274-0.2740.0000.0000.0000.000
61A158MET0-0.0230.00319.0540.1340.1340.0000.0000.0000.000
62A159TYR0-0.007-0.02720.844-0.023-0.0230.0000.0000.0000.000
63A160ILE00.0110.00922.8820.0850.0850.0000.0000.0000.000
64A161ASP-1-0.770-0.88325.336-0.631-0.6310.0000.0000.0000.000
65A162THR0-0.011-0.03128.5030.0030.0030.0000.0000.0000.000
66A163GLU-1-0.896-0.92230.771-0.480-0.4800.0000.0000.0000.000
67A164GLY0-0.019-0.01232.6360.0430.0430.0000.0000.0000.000
68A165THR0-0.094-0.05831.1600.0240.0240.0000.0000.0000.000
69A166PHE00.0590.03126.0370.0130.0130.0000.0000.0000.000
70A167ARG10.8050.88930.0350.5570.5570.0000.0000.0000.000
71A168PRO00.0810.03729.574-0.013-0.0130.0000.0000.0000.000
72A169GLU-1-0.827-0.92530.205-0.519-0.5190.0000.0000.0000.000
73A170ARG10.8230.90927.8960.4990.4990.0000.0000.0000.000
74A171LEU00.0080.00824.5990.0000.0000.0000.0000.0000.000
75A172LEU00.0140.01326.705-0.012-0.0120.0000.0000.0000.000
76A173ALA00.0210.02229.0520.0110.0110.0000.0000.0000.000
77A174VAL0-0.024-0.01723.1400.0290.0290.0000.0000.0000.000
78A175ALA00.0270.00624.700-0.010-0.0100.0000.0000.0000.000
79A176GLU-1-0.955-0.96525.764-0.388-0.3880.0000.0000.0000.000
80A177ARG10.7730.88023.8600.4740.4740.0000.0000.0000.000
81A178TYR0-0.032-0.01519.7870.0350.0350.0000.0000.0000.000
82A179GLY0-0.0110.01123.183-0.020-0.0200.0000.0000.0000.000
83A180LEU0-0.048-0.02820.543-0.031-0.0310.0000.0000.0000.000
84A181SER0-0.019-0.02024.6120.0740.0740.0000.0000.0000.000
85A182GLY00.0400.00425.981-0.055-0.0550.0000.0000.0000.000
86A183SER0-0.011-0.00928.199-0.003-0.0030.0000.0000.0000.000
87A184ASP-1-0.799-0.88623.772-0.869-0.8690.0000.0000.0000.000
88A185VAL0-0.017-0.00422.468-0.096-0.0960.0000.0000.0000.000
89A186LEU0-0.047-0.02623.968-0.060-0.0600.0000.0000.0000.000
90A187ASP-1-0.907-0.95025.660-0.879-0.8790.0000.0000.0000.000
91A188ASN0-0.087-0.04520.247-0.174-0.1740.0000.0000.0000.000
92A189VAL0-0.043-0.02420.924-0.158-0.1580.0000.0000.0000.000
93A190ALA00.0330.03722.4930.1080.1080.0000.0000.0000.000
94A191TYR0-0.045-0.05324.138-0.007-0.0070.0000.0000.0000.000
95A192ALA00.0020.00026.8150.0330.0330.0000.0000.0000.000
96A193ARG10.8570.95228.1760.5290.5290.0000.0000.0000.000
97A194ALA00.005-0.00128.8080.0030.0030.0000.0000.0000.000
98A195PHE0-0.020-0.02630.8340.0430.0430.0000.0000.0000.000
99A196ASN0-0.004-0.00533.0780.0170.0170.0000.0000.0000.000
100A197THR00.0850.03930.816-0.033-0.0330.0000.0000.0000.000
101A198ASP-1-0.857-0.91229.915-0.612-0.6120.0000.0000.0000.000
102A199HIS0-0.0030.00430.066-0.027-0.0270.0000.0000.0000.000
103A200GLN0-0.008-0.01925.861-0.006-0.0060.0000.0000.0000.000
104A201THR00.009-0.00525.572-0.088-0.0880.0000.0000.0000.000
105A202GLN00.0060.01025.444-0.084-0.0840.0000.0000.0000.000
106A203LEU00.0210.00225.335-0.050-0.0500.0000.0000.0000.000
107A204LEU00.0080.00920.498-0.092-0.0920.0000.0000.0000.000
108A205TYR0-0.016-0.00421.274-0.113-0.1130.0000.0000.0000.000
109A206GLN0-0.046-0.02122.967-0.078-0.0780.0000.0000.0000.000
110A207ALA00.0180.00819.539-0.050-0.0500.0000.0000.0000.000
111A208SER0-0.045-0.03818.264-0.136-0.1360.0000.0000.0000.000
112A209ALA00.0180.01318.832-0.126-0.1260.0000.0000.0000.000
113A210MET00.0110.00020.364-0.042-0.0420.0000.0000.0000.000
114A211MET0-0.040-0.01614.919-0.152-0.1520.0000.0000.0000.000
115A212VAL0-0.033-0.00215.354-0.284-0.2840.0000.0000.0000.000
116A213GLU-1-0.969-0.97317.544-1.318-1.3180.0000.0000.0000.000
117A214SER0-0.063-0.03717.7090.1560.1560.0000.0000.0000.000
118A215ARG10.9070.9568.6715.3195.3190.0000.0000.0000.000
119A216TYR0-0.024-0.01614.3400.3620.3620.0000.0000.0000.000
120A217ALA0-0.0110.00411.866-0.617-0.6170.0000.0000.0000.000
121A218LEU0-0.025-0.00812.722-0.200-0.2000.0000.0000.0000.000
122A219LEU0-0.0050.00515.3670.1940.1940.0000.0000.0000.000
123A220ILE0-0.0050.00017.6610.0320.0320.0000.0000.0000.000
124A221VAL0-0.024-0.01420.6350.0470.0470.0000.0000.0000.000
125A222ASP-1-0.741-0.83423.235-0.628-0.6280.0000.0000.0000.000
126A223SER00.0260.00826.2930.0310.0310.0000.0000.0000.000
127A224ALA00.0290.00624.049-0.030-0.0300.0000.0000.0000.000
128A225THR0-0.016-0.03626.1030.0080.0080.0000.0000.0000.000
129A226ALA0-0.0030.01029.3810.0430.0430.0000.0000.0000.000
130A227LEU00.001-0.00231.1700.0430.0430.0000.0000.0000.000
131A228TYR0-0.012-0.02728.5010.0180.0180.0000.0000.0000.000
132A229ARG10.9550.98933.4550.3770.3770.0000.0000.0000.000
133A237GLU-1-0.862-0.96736.822-0.333-0.3330.0000.0000.0000.000
134A238LEU0-0.0200.01336.044-0.013-0.0130.0000.0000.0000.000
135A239SER00.0630.02435.604-0.026-0.0260.0000.0000.0000.000
136A240ALA00.0370.02134.496-0.021-0.0210.0000.0000.0000.000
137A241ARG10.8590.93833.2830.3470.3470.0000.0000.0000.000
138A242GLN00.0080.00231.240-0.028-0.0280.0000.0000.0000.000
139A243MET0-0.0020.00529.541-0.041-0.0410.0000.0000.0000.000
140A244HIS0-0.035-0.00228.803-0.060-0.0600.0000.0000.0000.000
141A245LEU00.0520.02826.293-0.060-0.0600.0000.0000.0000.000
142A246ALA00.0170.00325.352-0.070-0.0700.0000.0000.0000.000
143A247ARG10.8710.93322.1940.8810.8810.0000.0000.0000.000
144A248PHE00.0390.02323.439-0.097-0.0970.0000.0000.0000.000
145A249LEU00.0280.00621.261-0.120-0.1200.0000.0000.0000.000
146A250ARG10.9300.95819.4440.6190.6190.0000.0000.0000.000
147A251MET0-0.070-0.02018.651-0.058-0.0580.0000.0000.0000.000
148A252LEU00.0320.01217.829-0.167-0.1670.0000.0000.0000.000
149A253LEU00.0160.01413.472-0.191-0.1910.0000.0000.0000.000
150A254ARG10.7510.86112.1272.3002.3000.0000.0000.0000.000
151A255LEU0-0.002-0.00613.922-0.225-0.2250.0000.0000.0000.000
152A256ALA00.0130.01011.261-0.373-0.3730.0000.0000.0000.000
153A257ASP-1-0.876-0.9459.316-3.721-3.7210.0000.0000.0000.000
154A258GLU-1-0.913-0.9298.971-3.756-3.7560.0000.0000.0000.000
155A259PHE0-0.011-0.01810.500-0.239-0.2390.0000.0000.0000.000
156A260GLY00.0160.0297.156-0.590-0.5900.0000.0000.0000.000
157A261VAL0-0.029-0.0147.840-0.242-0.2420.0000.0000.0000.000
158A262ALA00.0450.03010.772-0.053-0.0530.0000.0000.0000.000
159A263VAL0-0.015-0.00812.3310.3340.3340.0000.0000.0000.000
160A264VAL00.0070.01115.3070.2160.2160.0000.0000.0000.000
161A265ILE0-0.002-0.01118.1940.0860.0860.0000.0000.0000.000
162A266THR00.0110.00221.2580.0870.0870.0000.0000.0000.000
163A267ASN0-0.0150.01623.1420.0400.0400.0000.0000.0000.000
164A293ALA00.0800.04921.2610.0830.0830.0000.0000.0000.000
165A294HIS0-0.042-0.03014.5500.0050.0050.0000.0000.0000.000
166A295ALA0-0.029-0.02016.9800.0230.0230.0000.0000.0000.000
167A296SER00.009-0.01212.2880.0560.0560.0000.0000.0000.000
168A297THR0-0.059-0.02114.010-0.179-0.1790.0000.0000.0000.000
169A298THR00.0750.05114.3720.3000.3000.0000.0000.0000.000
170A299ARG10.8400.91217.0570.2720.2720.0000.0000.0000.000
171A300LEU00.0180.01319.0270.0950.0950.0000.0000.0000.000
172A301TYR0-0.014-0.01522.566-0.047-0.0470.0000.0000.0000.000
173A302LEU0-0.015-0.00424.4830.0380.0380.0000.0000.0000.000
174A303ARG10.8020.86428.1040.0530.0530.0000.0000.0000.000
175A304LYS10.8240.89931.4260.1760.1760.0000.0000.0000.000
176A305GLY00.0690.05133.8230.0230.0230.0000.0000.0000.000
177A306ARG10.9600.97534.8830.0400.0400.0000.0000.0000.000
178A307GLY00.0260.03236.357-0.003-0.0030.0000.0000.0000.000
179A308GLU-1-0.804-0.91333.228-0.171-0.1710.0000.0000.0000.000
180A309THR00.014-0.00931.759-0.021-0.0210.0000.0000.0000.000
181A310ARG10.7150.86029.0210.2490.2490.0000.0000.0000.000
182A311ILE00.0030.00528.5890.0210.0210.0000.0000.0000.000
183A312CYS0-0.0320.00022.356-0.044-0.0440.0000.0000.0000.000
184A313LYS10.8360.92425.5860.0160.0160.0000.0000.0000.000
185A314ILE00.0330.01719.044-0.085-0.0850.0000.0000.0000.000
186A315TYR00.011-0.00923.0750.0430.0430.0000.0000.0000.000
187A316ASP-1-0.887-0.93922.3150.1180.1180.0000.0000.0000.000
188A317SER00.0050.00719.7190.0230.0230.0000.0000.0000.000
189A318PRO0-0.038-0.03718.5500.0240.0240.0000.0000.0000.000
190A319CYS0-0.0310.00018.0250.1140.1140.0000.0000.0000.000
191A320LEU0-0.011-0.01320.712-0.024-0.0240.0000.0000.0000.000
192A321PRO0-0.0100.00023.584-0.039-0.0390.0000.0000.0000.000
193A322GLU-1-0.849-0.92125.6600.0350.0350.0000.0000.0000.000
194A323ALA00.0040.01022.6560.0560.0560.0000.0000.0000.000
195A324GLU-1-0.786-0.87324.788-0.058-0.0580.0000.0000.0000.000
196A325ALA00.0290.03023.6910.0450.0450.0000.0000.0000.000
197A326MET0-0.042-0.02525.678-0.040-0.0400.0000.0000.0000.000
198A327PHE00.0140.00925.117-0.008-0.0080.0000.0000.0000.000
199A328ALA00.0250.00727.1670.0220.0220.0000.0000.0000.000
200A329ILE0-0.081-0.03527.965-0.047-0.0470.0000.0000.0000.000
201A330ASN00.0280.01628.5160.0570.0570.0000.0000.0000.000
202A331ALA0-0.025-0.01330.711-0.034-0.0340.0000.0000.0000.000
203A332ASP-1-0.813-0.91128.434-0.402-0.4020.0000.0000.0000.000
204A333GLY00.0330.02426.154-0.038-0.0380.0000.0000.0000.000
205A334VAL0-0.031-0.02223.2500.0690.0690.0000.0000.0000.000
206A335GLY00.0620.04724.402-0.026-0.0260.0000.0000.0000.000
207A336ASP-1-0.810-0.89224.150-0.099-0.0990.0000.0000.0000.000
208A337ALA0-0.038-0.01826.568-0.008-0.0080.0000.0000.0000.000
209A338LYS10.8600.92328.3390.0720.0720.0000.0000.0000.000
210A339ASP-2-1.862-1.90833.081-0.039-0.0390.0000.0000.0000.000