FMODB ID: NZ6QQ
Calculation Name: 1FTZ-A-Other547
Preferred Name:
Target Type:
Ligand Name:
Ligand 3-letter code:
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 1FTZ
Chain ID: A
UniProt ID: P02835
Base Structure: SolutionNMR
Registration Date: 2025-09-02
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
| Optimization | MOE:Amber10:EHT |
|---|---|
| Restraint | OptAll |
| Protonation | MOE:Protonate 3D |
| Complement | MOE:Homology Modeling |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE. |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 70 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -475657.917061 |
|---|---|
| FMO2-HF: Nuclear repulsion | 445010.138317 |
| FMO2-HF: Total energy | -30647.778744 |
| FMO2-MP2: Total energy | -30737.711405 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:-1:MET)
Summations of interaction energy for
fragment #1(A:-1:MET)
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| 153.861 | 155.606 | 0.094 | -0.909 | -0.93 | -0.003 |
Interaction energy analysis for fragmet #1(A:-1:MET)
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | A | 1 | SER | 0 | -0.003 | -0.007 | 3.182 | -3.081 | -1.336 | 0.094 | -0.909 | -0.930 | -0.003 |
| 4 | A | 2 | LYS | 1 | 0.826 | 0.878 | 5.947 | 38.119 | 38.119 | 0.000 | 0.000 | 0.000 | 0.000 |
| 5 | A | 3 | ARG | 1 | 0.874 | 0.947 | 9.276 | 25.668 | 25.668 | 0.000 | 0.000 | 0.000 | 0.000 |
| 6 | A | 4 | THR | 0 | 0.042 | 0.033 | 11.211 | 0.816 | 0.816 | 0.000 | 0.000 | 0.000 | 0.000 |
| 7 | A | 5 | ARG | 1 | 1.038 | 1.010 | 14.672 | 19.511 | 19.511 | 0.000 | 0.000 | 0.000 | 0.000 |
| 8 | A | 6 | GLN | 0 | 0.032 | 0.024 | 16.885 | 1.541 | 1.541 | 0.000 | 0.000 | 0.000 | 0.000 |
| 9 | A | 7 | THR | 0 | -0.011 | 0.005 | 17.637 | -0.954 | -0.954 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10 | A | 8 | TYR | 0 | 0.111 | 0.041 | 18.974 | -0.579 | -0.579 | 0.000 | 0.000 | 0.000 | 0.000 |
| 11 | A | 9 | THR | 0 | 0.047 | 0.037 | 18.061 | 0.358 | 0.358 | 0.000 | 0.000 | 0.000 | 0.000 |
| 12 | A | 10 | ARG | 1 | 0.989 | 0.985 | 21.310 | 11.610 | 11.610 | 0.000 | 0.000 | 0.000 | 0.000 |
| 13 | A | 11 | TYR | 0 | 0.022 | 0.000 | 16.955 | 0.186 | 0.186 | 0.000 | 0.000 | 0.000 | 0.000 |
| 14 | A | 12 | GLN | 0 | 0.053 | 0.013 | 17.092 | 1.010 | 1.010 | 0.000 | 0.000 | 0.000 | 0.000 |
| 15 | A | 13 | THR | 0 | -0.021 | -0.030 | 20.991 | 0.381 | 0.381 | 0.000 | 0.000 | 0.000 | 0.000 |
| 16 | A | 14 | LEU | 0 | -0.035 | -0.008 | 24.268 | 0.533 | 0.533 | 0.000 | 0.000 | 0.000 | 0.000 |
| 17 | A | 15 | GLU | -1 | -0.832 | -0.918 | 20.064 | -15.205 | -15.205 | 0.000 | 0.000 | 0.000 | 0.000 |
| 18 | A | 16 | LEU | 0 | 0.018 | 0.011 | 22.866 | 0.269 | 0.269 | 0.000 | 0.000 | 0.000 | 0.000 |
| 19 | A | 17 | GLU | -1 | -0.805 | -0.874 | 25.549 | -9.340 | -9.340 | 0.000 | 0.000 | 0.000 | 0.000 |
| 20 | A | 18 | LYS | 1 | 0.913 | 0.966 | 25.222 | 11.792 | 11.792 | 0.000 | 0.000 | 0.000 | 0.000 |
| 21 | A | 19 | GLU | -1 | -0.722 | -0.835 | 26.134 | -11.598 | -11.598 | 0.000 | 0.000 | 0.000 | 0.000 |
| 22 | A | 20 | PHE | 0 | -0.049 | -0.039 | 28.266 | 0.333 | 0.333 | 0.000 | 0.000 | 0.000 | 0.000 |
| 23 | A | 21 | HIS | 0 | -0.030 | -0.027 | 30.988 | 0.159 | 0.159 | 0.000 | 0.000 | 0.000 | 0.000 |
| 24 | A | 22 | PHE | 0 | -0.018 | 0.021 | 29.720 | 0.277 | 0.277 | 0.000 | 0.000 | 0.000 | 0.000 |
| 25 | A | 23 | ASN | 0 | -0.018 | -0.021 | 29.769 | 0.497 | 0.497 | 0.000 | 0.000 | 0.000 | 0.000 |
| 26 | A | 24 | ARG | 1 | 1.024 | 1.012 | 31.633 | 7.945 | 7.945 | 0.000 | 0.000 | 0.000 | 0.000 |
| 27 | A | 25 | TYR | 0 | 0.003 | 0.005 | 32.453 | -0.120 | -0.120 | 0.000 | 0.000 | 0.000 | 0.000 |
| 28 | A | 26 | ILE | 0 | 0.044 | 0.037 | 26.083 | 0.077 | 0.077 | 0.000 | 0.000 | 0.000 | 0.000 |
| 29 | A | 27 | THR | 0 | 0.055 | 0.031 | 28.867 | -0.168 | -0.168 | 0.000 | 0.000 | 0.000 | 0.000 |
| 30 | A | 28 | ARG | 1 | 0.895 | 0.910 | 24.645 | 12.014 | 12.014 | 0.000 | 0.000 | 0.000 | 0.000 |
| 31 | A | 29 | ARG | 1 | 0.979 | 0.997 | 23.791 | 12.188 | 12.188 | 0.000 | 0.000 | 0.000 | 0.000 |
| 32 | A | 30 | ARG | 1 | 0.897 | 0.916 | 21.984 | 12.663 | 12.663 | 0.000 | 0.000 | 0.000 | 0.000 |
| 33 | A | 31 | ARG | 1 | 0.792 | 0.867 | 23.625 | 11.832 | 11.832 | 0.000 | 0.000 | 0.000 | 0.000 |
| 34 | A | 32 | ILE | 0 | -0.004 | -0.006 | 20.143 | -0.458 | -0.458 | 0.000 | 0.000 | 0.000 | 0.000 |
| 35 | A | 33 | ASP | -1 | -0.862 | -0.918 | 19.522 | -15.702 | -15.702 | 0.000 | 0.000 | 0.000 | 0.000 |
| 36 | A | 34 | ILE | 0 | -0.006 | 0.008 | 18.750 | -0.888 | -0.888 | 0.000 | 0.000 | 0.000 | 0.000 |
| 37 | A | 35 | ALA | 0 | -0.027 | -0.025 | 18.811 | -0.660 | -0.660 | 0.000 | 0.000 | 0.000 | 0.000 |
| 38 | A | 36 | ASN | 0 | -0.051 | -0.009 | 13.846 | -2.054 | -2.054 | 0.000 | 0.000 | 0.000 | 0.000 |
| 39 | A | 37 | ALA | 0 | 0.055 | 0.034 | 14.456 | -1.368 | -1.368 | 0.000 | 0.000 | 0.000 | 0.000 |
| 40 | A | 38 | LEU | 0 | -0.017 | 0.002 | 15.115 | -0.772 | -0.772 | 0.000 | 0.000 | 0.000 | 0.000 |
| 41 | A | 39 | SER | 0 | -0.076 | -0.039 | 13.208 | -1.387 | -1.387 | 0.000 | 0.000 | 0.000 | 0.000 |
| 42 | A | 40 | LEU | 0 | 0.000 | 0.020 | 15.467 | 0.264 | 0.264 | 0.000 | 0.000 | 0.000 | 0.000 |
| 43 | A | 41 | SER | 0 | 0.015 | -0.005 | 18.290 | 0.750 | 0.750 | 0.000 | 0.000 | 0.000 | 0.000 |
| 44 | A | 42 | GLU | -1 | -0.672 | -0.809 | 19.738 | -12.230 | -12.230 | 0.000 | 0.000 | 0.000 | 0.000 |
| 45 | A | 43 | ARG | 1 | 0.898 | 0.969 | 22.821 | 13.268 | 13.268 | 0.000 | 0.000 | 0.000 | 0.000 |
| 46 | A | 44 | GLN | 0 | -0.012 | -0.028 | 21.656 | 0.783 | 0.783 | 0.000 | 0.000 | 0.000 | 0.000 |
| 47 | A | 45 | ILE | 0 | 0.071 | 0.045 | 21.149 | 0.713 | 0.713 | 0.000 | 0.000 | 0.000 | 0.000 |
| 48 | A | 46 | LYS | 1 | 0.915 | 0.972 | 24.989 | 10.481 | 10.481 | 0.000 | 0.000 | 0.000 | 0.000 |
| 49 | A | 47 | ILE | 0 | 0.008 | 0.001 | 27.314 | 0.415 | 0.415 | 0.000 | 0.000 | 0.000 | 0.000 |
| 50 | A | 48 | TRP | 0 | 0.032 | 0.025 | 25.895 | 0.571 | 0.571 | 0.000 | 0.000 | 0.000 | 0.000 |
| 51 | A | 49 | PHE | 0 | 0.019 | -0.011 | 26.785 | 0.373 | 0.373 | 0.000 | 0.000 | 0.000 | 0.000 |
| 52 | A | 50 | GLN | 0 | -0.031 | -0.021 | 30.593 | 0.134 | 0.134 | 0.000 | 0.000 | 0.000 | 0.000 |
| 53 | A | 51 | ASN | 0 | -0.019 | -0.019 | 31.090 | 0.439 | 0.439 | 0.000 | 0.000 | 0.000 | 0.000 |
| 54 | A | 52 | ARG | 1 | 0.778 | 0.875 | 30.645 | 10.223 | 10.223 | 0.000 | 0.000 | 0.000 | 0.000 |
| 55 | A | 53 | ARG | 1 | 0.826 | 0.901 | 33.615 | 9.342 | 9.342 | 0.000 | 0.000 | 0.000 | 0.000 |
| 56 | A | 54 | MET | 0 | 0.088 | 0.082 | 36.952 | 0.217 | 0.217 | 0.000 | 0.000 | 0.000 | 0.000 |
| 57 | A | 55 | LYS | 1 | 0.839 | 0.914 | 32.636 | 9.435 | 9.435 | 0.000 | 0.000 | 0.000 | 0.000 |
| 58 | A | 56 | SER | 0 | -0.020 | -0.017 | 36.600 | -0.033 | -0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
| 59 | A | 57 | LYS | 1 | 0.877 | 0.925 | 37.972 | 7.790 | 7.790 | 0.000 | 0.000 | 0.000 | 0.000 |
| 60 | A | 58 | LYS | 1 | 0.824 | 0.903 | 33.756 | 9.312 | 9.312 | 0.000 | 0.000 | 0.000 | 0.000 |
| 61 | A | 59 | ASP | -1 | -0.834 | -0.931 | 38.241 | -7.890 | -7.890 | 0.000 | 0.000 | 0.000 | 0.000 |
| 62 | A | 60 | ARG | 1 | 0.914 | 0.957 | 40.842 | 7.470 | 7.470 | 0.000 | 0.000 | 0.000 | 0.000 |
| 63 | A | 61 | THR | 0 | -0.033 | -0.013 | 44.437 | 0.082 | 0.082 | 0.000 | 0.000 | 0.000 | 0.000 |
| 64 | A | 62 | LEU | 0 | 0.028 | 0.011 | 46.342 | 0.080 | 0.080 | 0.000 | 0.000 | 0.000 | 0.000 |
| 65 | A | 63 | ASP | -1 | -0.884 | -0.929 | 49.626 | -5.843 | -5.843 | 0.000 | 0.000 | 0.000 | 0.000 |
| 66 | A | 64 | SER | 0 | -0.032 | -0.008 | 48.866 | 0.024 | 0.024 | 0.000 | 0.000 | 0.000 | 0.000 |
| 67 | A | 65 | SER | 0 | -0.033 | -0.014 | 49.516 | -0.055 | -0.055 | 0.000 | 0.000 | 0.000 | 0.000 |
| 68 | A | 66 | PRO | 0 | -0.033 | -0.027 | 46.354 | -0.172 | -0.172 | 0.000 | 0.000 | 0.000 | 0.000 |
| 69 | A | 67 | GLU | -1 | -0.881 | -0.946 | 45.397 | -6.894 | -6.894 | 0.000 | 0.000 | 0.000 | 0.000 |
| 70 | A | 68 | HIS | 0 | 0.050 | 0.049 | 42.031 | -0.633 | -0.633 | 0.000 | 0.000 | 0.000 | 0.000 |