FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: Q58MY

Calculation Name: 1CVS-C-Xray547

Preferred Name: Basic fibroblast growth factor

Target Type: SINGLE PROTEIN

Ligand Name: sulfate ion

Ligand 3-letter code: SO4

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1CVS

Chain ID: C

ChEMBL ID: CHEMBL3107

UniProt ID: P09038

Base Structure: X-ray

Registration Date: 2025-10-06

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 209
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2016439.099683
FMO2-HF: Nuclear repulsion 1933277.924839
FMO2-HF: Total energy -83161.174844
FMO2-MP2: Total energy -83402.148968


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:149:MET)


Summations of interaction energy for fragment #1(C:149:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
18.94522.2861.305-1.684-2.964-0.01
Interaction energy analysis for fragmet #1(C:149:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.868 / q_NPA : 0.923
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3C151VAL0-0.0140.0072.2550.2852.9311.304-1.399-2.552-0.010
4C152ALA00.0680.0494.6452.0382.097-0.001-0.015-0.0440.000
35C183THR0-0.049-0.0083.6153.4984.1340.002-0.270-0.3680.000
5C153PRO0-0.037-0.0148.330-0.855-0.8550.0000.0000.0000.000
6C154TYR00.0110.0027.5052.4602.4600.0000.0000.0000.000
7C155TRP00.033-0.01411.893-0.147-0.1470.0000.0000.0000.000
8C156THR00.000-0.00812.5960.0330.0330.0000.0000.0000.000
9C157SER0-0.040-0.03015.0620.6500.6500.0000.0000.0000.000
10C158PRO00.0530.02217.4410.5670.5670.0000.0000.0000.000
11C159GLU-1-0.852-0.91520.275-11.646-11.6460.0000.0000.0000.000
12C160LYS0-0.0040.00622.5880.7020.7020.0000.0000.0000.000
13C161MET0-0.129-0.06720.0850.0720.0720.0000.0000.0000.000
14C162GLU-1-0.829-0.90424.069-11.768-11.7680.0000.0000.0000.000
15C163LYS10.8460.93626.6549.7459.7450.0000.0000.0000.000
16C164LYS10.9180.94025.98811.14711.1470.0000.0000.0000.000
17C165LEU00.0240.01829.622-0.015-0.0150.0000.0000.0000.000
18C166HIS0-0.043-0.02929.6470.2130.2130.0000.0000.0000.000
19C167ALA00.0720.04834.7080.0560.0560.0000.0000.0000.000
20C168VAL0-0.057-0.03637.119-0.055-0.0550.0000.0000.0000.000
21C169PRO0-0.0080.00339.9760.0810.0810.0000.0000.0000.000
22C170ALA00.0370.00342.089-0.181-0.1810.0000.0000.0000.000
23C171ALA0-0.0010.00443.1260.0720.0720.0000.0000.0000.000
24C172LYS10.9160.98138.1967.8497.8490.0000.0000.0000.000
25C173THR00.006-0.02134.5320.0340.0340.0000.0000.0000.000
26C174VAL0-0.032-0.00832.409-0.044-0.0440.0000.0000.0000.000
27C175LYS10.8830.95025.51911.66311.6630.0000.0000.0000.000
28C176PHE0-0.0160.00527.143-0.067-0.0670.0000.0000.0000.000
29C177LYS10.8660.91923.29611.56111.5610.0000.0000.0000.000
30C178CYS0-0.092-0.00319.6890.4750.4750.0000.0000.0000.000
31C179PRO00.0500.02118.378-0.704-0.7040.0000.0000.0000.000
32C180SER00.0500.03213.966-0.188-0.1880.0000.0000.0000.000
33C181SER0-0.029-0.0099.615-0.654-0.6540.0000.0000.0000.000
34C182GLY00.0640.0247.5661.2121.2120.0000.0000.0000.000
36C184PRO00.0780.0235.807-5.794-5.7940.0000.0000.0000.000
37C185GLN00.0350.0177.686-0.021-0.0210.0000.0000.0000.000
38C186PRO0-0.0490.00110.5351.3971.3970.0000.0000.0000.000
39C187THR0-0.021-0.01013.2131.5211.5210.0000.0000.0000.000
40C188LEU0-0.018-0.01316.796-0.055-0.0550.0000.0000.0000.000
41C189ARG10.8780.94119.70915.16315.1630.0000.0000.0000.000
42C190TRP00.031-0.00423.009-0.062-0.0620.0000.0000.0000.000
43C191LEU0-0.0140.00825.8620.1830.1830.0000.0000.0000.000
44C192LYS10.8610.94528.5728.6488.6480.0000.0000.0000.000
45C193ASN00.006-0.01732.0800.0900.0900.0000.0000.0000.000
46C194GLY00.0230.02029.3660.1170.1170.0000.0000.0000.000
47C195LYS10.8460.93430.0669.1439.1430.0000.0000.0000.000
48C196GLU-1-0.788-0.92029.748-10.059-10.0590.0000.0000.0000.000
49C197PHE00.0400.02729.9730.4090.4090.0000.0000.0000.000
50C198LYS10.9280.97731.0849.0399.0390.0000.0000.0000.000
51C199PRO00.011-0.00231.0920.2500.2500.0000.0000.0000.000
52C200ASP-1-0.809-0.90233.795-8.801-8.8010.0000.0000.0000.000
53C201HIS0-0.088-0.04734.5650.3480.3480.0000.0000.0000.000
54C202ARG10.7220.83035.7638.6198.6190.0000.0000.0000.000
55C203ILE00.0640.03139.099-0.088-0.0880.0000.0000.0000.000
56C204GLY0-0.0010.00439.665-0.053-0.0530.0000.0000.0000.000
57C205GLY0-0.0100.01835.966-0.206-0.2060.0000.0000.0000.000
58C206TYR0-0.050-0.06329.051-0.076-0.0760.0000.0000.0000.000
59C207LYS10.8940.94426.93011.43611.4360.0000.0000.0000.000
60C208VAL00.0350.02123.970-0.060-0.0600.0000.0000.0000.000
61C209ARG10.9130.95924.57010.86610.8660.0000.0000.0000.000
62C210TYR00.0860.03119.501-0.014-0.0140.0000.0000.0000.000
63C211ALA00.0450.03118.685-0.562-0.5620.0000.0000.0000.000
64C212THR0-0.041-0.02519.6000.0990.0990.0000.0000.0000.000
65C213TRP00.0300.02414.0600.9360.9360.0000.0000.0000.000
66C214SER0-0.022-0.01820.4680.5480.5480.0000.0000.0000.000
67C215ILE00.0060.01324.279-0.073-0.0730.0000.0000.0000.000
68C216ILE0-0.031-0.02527.4930.1280.1280.0000.0000.0000.000
69C217MET00.0110.00930.7720.0140.0140.0000.0000.0000.000
70C218ASP-1-0.818-0.88934.267-8.785-8.7850.0000.0000.0000.000
71C219SER00.0190.00737.3870.1260.1260.0000.0000.0000.000
72C220VAL0-0.045-0.01536.7020.0520.0520.0000.0000.0000.000
73C221VAL00.0550.02139.9520.2250.2250.0000.0000.0000.000
74C222PRO00.0450.01741.434-0.232-0.2320.0000.0000.0000.000
75C223SER00.0290.02142.041-0.077-0.0770.0000.0000.0000.000
76C224ASP-1-0.740-0.83537.300-8.499-8.4990.0000.0000.0000.000
77C225LYS10.8460.95936.8907.0687.0680.0000.0000.0000.000
78C226GLY00.0160.01036.2120.0180.0180.0000.0000.0000.000
79C227ASN0-0.005-0.01131.335-0.056-0.0560.0000.0000.0000.000
80C228TYR0-0.041-0.04429.138-0.119-0.1190.0000.0000.0000.000
81C229THR00.0020.00824.433-0.139-0.1390.0000.0000.0000.000
82C231ILE00.031-0.00819.2170.0240.0240.0000.0000.0000.000
83C232VAL00.003-0.00414.4190.1240.1240.0000.0000.0000.000
84C233GLU-1-0.872-0.93814.693-17.187-17.1870.0000.0000.0000.000
85C234ASN0-0.028-0.0418.2741.4661.4660.0000.0000.0000.000
86C235GLU-1-0.851-0.9069.514-29.490-29.4900.0000.0000.0000.000
87C236TYR0-0.091-0.0596.340-2.801-2.8010.0000.0000.0000.000
88C237GLY00.0260.01610.5140.7960.7960.0000.0000.0000.000
89C238SER00.004-0.00113.080-0.388-0.3880.0000.0000.0000.000
90C239ILE0-0.0330.00713.7830.5210.5210.0000.0000.0000.000
91C240ASN00.011-0.01216.7220.2990.2990.0000.0000.0000.000
92C241HIS00.0160.00220.3440.2540.2540.0000.0000.0000.000
93C242THR0-0.006-0.00522.8000.0190.0190.0000.0000.0000.000
94C243TYR0-0.048-0.03423.9450.1210.1210.0000.0000.0000.000
95C244GLN00.0380.01929.149-0.048-0.0480.0000.0000.0000.000
96C245LEU0-0.047-0.02232.949-0.036-0.0360.0000.0000.0000.000
97C246ASP-1-0.830-0.92835.394-7.469-7.4690.0000.0000.0000.000
98C247VAL0-0.015-0.01339.049-0.097-0.0970.0000.0000.0000.000
99C248VAL0-0.0040.00041.5790.1340.1340.0000.0000.0000.000
100C249GLU-1-0.883-0.95844.914-6.713-6.7130.0000.0000.0000.000
101C250ARG10.8010.86347.1286.5346.5340.0000.0000.0000.000
102C251SER0-0.007-0.01250.1990.0750.0750.0000.0000.0000.000
103C252PRO0-0.0040.01452.4540.0730.0730.0000.0000.0000.000
104C253HIS0-0.011-0.01854.956-0.007-0.0070.0000.0000.0000.000
105C254ARG10.9350.98658.7554.8644.8640.0000.0000.0000.000
106C255PRO00.0190.02261.156-0.048-0.0480.0000.0000.0000.000
107C256ILE0-0.0050.01560.2020.0790.0790.0000.0000.0000.000
108C257LEU00.0280.01263.548-0.040-0.0400.0000.0000.0000.000
109C258GLN00.010-0.00165.737-0.045-0.0450.0000.0000.0000.000
110C259ALA00.0180.00066.7980.0740.0740.0000.0000.0000.000
111C260GLY00.0020.00169.538-0.001-0.0010.0000.0000.0000.000
112C261LEU0-0.068-0.01368.6460.0530.0530.0000.0000.0000.000
113C262PRO00.0370.01171.016-0.051-0.0510.0000.0000.0000.000
114C263ALA00.0270.02273.8310.0210.0210.0000.0000.0000.000
115C264ASN00.008-0.00976.4040.0100.0100.0000.0000.0000.000
116C265LYS10.8410.92676.8494.1364.1360.0000.0000.0000.000
117C266THR00.0040.00982.3220.0380.0380.0000.0000.0000.000
118C267VAL0-0.050-0.02483.442-0.034-0.0340.0000.0000.0000.000
119C268ALA00.0620.03986.6420.0310.0310.0000.0000.0000.000
120C269LEU00.0170.00688.631-0.048-0.0480.0000.0000.0000.000
121C270GLY00.0240.02389.1250.0210.0210.0000.0000.0000.000
122C271SER0-0.092-0.05684.877-0.037-0.0370.0000.0000.0000.000
123C272ASN0-0.019-0.01081.007-0.023-0.0230.0000.0000.0000.000
124C273VAL00.0210.01579.723-0.021-0.0210.0000.0000.0000.000
125C274GLU-1-0.775-0.87773.863-4.310-4.3100.0000.0000.0000.000
126C275PHE0-0.047-0.01774.941-0.003-0.0030.0000.0000.0000.000
127C276MET00.0370.01968.433-0.021-0.0210.0000.0000.0000.000
128C277CYS0-0.042-0.01468.8430.0000.0000.0000.0000.0000.000
129C278LYS10.8260.92060.9075.1125.1120.0000.0000.0000.000
130C279VAL00.030-0.00162.0240.0150.0150.0000.0000.0000.000
131C280TYR0-0.053-0.03654.433-0.083-0.0830.0000.0000.0000.000
132C281SER00.005-0.03558.0480.0820.0820.0000.0000.0000.000
133C282ASP-1-0.773-0.81751.749-6.283-6.2830.0000.0000.0000.000
134C283PRO0-0.006-0.00254.121-0.043-0.0430.0000.0000.0000.000
135C284GLN00.0520.01854.1380.1480.1480.0000.0000.0000.000
136C285PRO0-0.0260.00657.4650.0430.0430.0000.0000.0000.000
137C286HIS0-0.008-0.00661.0880.0230.0230.0000.0000.0000.000
138C287ILE00.0180.00163.4900.0490.0490.0000.0000.0000.000
139C288GLN0-0.004-0.02466.5120.0260.0260.0000.0000.0000.000
140C289TRP0-0.048-0.02870.0130.0320.0320.0000.0000.0000.000
141C290LEU00.0150.00273.4430.0230.0230.0000.0000.0000.000
142C291LYS10.8530.95976.8343.7733.7730.0000.0000.0000.000
143C292HIS10.8580.91878.5574.0234.0230.0000.0000.0000.000
144C293ILE00.0110.00382.7850.0210.0210.0000.0000.0000.000
145C294GLU-1-0.776-0.87686.222-3.662-3.6620.0000.0000.0000.000
146C295VAL0-0.0040.00488.5850.0140.0140.0000.0000.0000.000
147C296ASN00.0320.01691.2370.0130.0130.0000.0000.0000.000
148C297GLY00.0130.02293.704-0.003-0.0030.0000.0000.0000.000
149C298SER0-0.070-0.04290.335-0.036-0.0360.0000.0000.0000.000
150C299LYS10.8710.90586.2093.6683.6680.0000.0000.0000.000
151C300ILE0-0.050-0.01784.231-0.056-0.0560.0000.0000.0000.000
152C301GLY00.0670.04785.3590.0550.0550.0000.0000.0000.000
153C302PRO0-0.035-0.04086.952-0.005-0.0050.0000.0000.0000.000
154C303ASP-1-0.878-0.94282.203-3.890-3.8900.0000.0000.0000.000
155C304ASN0-0.064-0.03482.752-0.007-0.0070.0000.0000.0000.000
156C305LEU0-0.0080.01378.336-0.060-0.0600.0000.0000.0000.000
157C306PRO0-0.026-0.01779.7520.0550.0550.0000.0000.0000.000
158C307TYR00.0040.01181.728-0.040-0.0400.0000.0000.0000.000
159C308VAL0-0.047-0.03378.390-0.007-0.0070.0000.0000.0000.000
160C309GLN00.0170.02280.6740.0400.0400.0000.0000.0000.000
161C310ILE0-0.025-0.02074.416-0.032-0.0320.0000.0000.0000.000
162C311LEU0-0.011-0.00276.1960.0310.0310.0000.0000.0000.000
163C312LYS10.8550.90970.3934.4864.4860.0000.0000.0000.000
164C313THR0-0.0040.00068.6490.0110.0110.0000.0000.0000.000
165C314ALA00.0390.04064.3040.0030.0030.0000.0000.0000.000
166C315GLY00.030-0.00263.9520.0080.0080.0000.0000.0000.000
167C316VAL0-0.015-0.01261.804-0.013-0.0130.0000.0000.0000.000
168C317ASN0-0.0020.00363.988-0.055-0.0550.0000.0000.0000.000
169C318THR0-0.034-0.01866.2210.0950.0950.0000.0000.0000.000
170C319THR0-0.0150.00260.899-0.075-0.0750.0000.0000.0000.000
171C320ASP-1-0.827-0.93660.424-5.141-5.1410.0000.0000.0000.000
172C321LYS10.8860.93960.2625.2085.2080.0000.0000.0000.000
173C322GLU-1-0.843-0.91863.305-4.731-4.7310.0000.0000.0000.000
174C323MET0-0.0250.01765.5270.1100.1100.0000.0000.0000.000
175C324GLU-1-0.769-0.84863.427-5.032-5.0320.0000.0000.0000.000
176C325VAL0-0.025-0.00867.2240.0360.0360.0000.0000.0000.000
177C326LEU00.0040.01570.715-0.003-0.0030.0000.0000.0000.000
178C327HIS0-0.011-0.01672.3150.0680.0680.0000.0000.0000.000
179C328LEU00.0120.00876.4910.0100.0100.0000.0000.0000.000
180C329ARG10.7830.86176.0654.1454.1450.0000.0000.0000.000
181C330ASN0-0.030-0.01282.1740.0380.0380.0000.0000.0000.000
182C331VAL00.0000.01784.1110.0110.0110.0000.0000.0000.000
183C332SER00.0690.02286.6080.0510.0510.0000.0000.0000.000
184C333PHE0-0.003-0.03389.207-0.022-0.0220.0000.0000.0000.000
185C334GLU-1-0.914-0.95189.379-3.548-3.5480.0000.0000.0000.000
186C335ASP-1-0.838-0.91285.056-3.796-3.7960.0000.0000.0000.000
187C336ALA0-0.0090.01585.276-0.059-0.0590.0000.0000.0000.000
188C337GLY00.0230.00885.7580.0110.0110.0000.0000.0000.000
189C338GLU-1-0.948-0.97380.340-4.030-4.0300.0000.0000.0000.000
190C339TYR0-0.010-0.04077.920-0.014-0.0140.0000.0000.0000.000
191C340THR0-0.009-0.02173.9380.0080.0080.0000.0000.0000.000
192C342LEU00.0360.00069.980-0.003-0.0030.0000.0000.0000.000
193C343ALA00.0330.00864.441-0.036-0.0360.0000.0000.0000.000
194C344GLY00.0210.01264.8140.0080.0080.0000.0000.0000.000
195C345ASN00.000-0.02259.069-0.011-0.0110.0000.0000.0000.000
196C346SER00.007-0.00957.7150.0430.0430.0000.0000.0000.000
197C347ILE0-0.074-0.01456.135-0.006-0.0060.0000.0000.0000.000
198C348GLY00.0120.00360.5880.0530.0530.0000.0000.0000.000
199C349LEU00.009-0.00164.098-0.045-0.0450.0000.0000.0000.000
200C350SER0-0.045-0.04065.3850.0390.0390.0000.0000.0000.000
201C351HIS00.000-0.00267.9640.0040.0040.0000.0000.0000.000
202C352HIS0-0.040-0.01369.263-0.011-0.0110.0000.0000.0000.000
203C353SER00.0140.02172.951-0.001-0.0010.0000.0000.0000.000
204C354ALA0-0.0180.00576.597-0.005-0.0050.0000.0000.0000.000
205C355TRP00.0320.00878.8060.0040.0040.0000.0000.0000.000
206C356LEU0-0.036-0.00582.185-0.029-0.0290.0000.0000.0000.000
207C357THR0-0.002-0.01083.7860.0450.0450.0000.0000.0000.000
208C358VAL0-0.020-0.01487.207-0.027-0.0270.0000.0000.0000.000
209C359LEU-1-0.846-0.91389.516-3.446-3.4460.0000.0000.0000.000