FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: RMKG8

Calculation Name: 4X22-A-Xray547

Preferred Name:

Target Type:

Ligand Name: 2-(2-methoxyethoxy)ethanol | 1,2-ethanediol

Ligand 3-letter code: PG0 | EDO

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4X22

Chain ID: A

ChEMBL ID:

UniProt ID: Q8F5I5

Base Structure: X-ray

Registration Date: 2025-10-04

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 249
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -3185723.283509
FMO2-HF: Nuclear repulsion 3091312.790349
FMO2-HF: Total energy -94410.49316
FMO2-MP2: Total energy -94688.39099


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:3:ARG)


Summations of interaction energy for fragment #1(A:3:ARG)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-450.311-447.12559.617-27.769-35.034-0.325
Interaction energy analysis for fragmet #1(A:3:ARG)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 2 / q_Mulliken : 1.588 / q_NPA : 1.780
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A5THR00.0960.0653.234-5.359-3.4820.062-0.796-1.142-0.002
191A193ARG10.7680.8452.194110.004112.6492.395-1.303-3.737-0.002
206A208GLU-1-0.776-0.8951.877-137.446-137.9998.150-3.524-4.073-0.049
207A209SER0-0.096-0.0581.828-41.116-41.83612.631-5.785-6.126-0.071
208A210ILE00.0040.0052.452-15.438-11.4502.323-2.646-3.666-0.037
209A211SER0-0.031-0.0352.314-18.733-16.8693.306-1.847-3.323-0.024
210A212ILE0-0.010-0.0053.51514.45414.6660.0160.110-0.3380.000
228A230LYS10.8540.9292.42089.86890.7650.234-0.313-0.818-0.001
229A231ASP-1-0.790-0.8912.121-120.260-119.3684.049-2.106-2.836-0.028
230A232ILE0-0.0130.0093.7101.7841.9280.0000.096-0.2390.000
231A233ASP-1-0.718-0.8191.721-167.814-175.99626.452-9.603-8.667-0.111
232A234GLY00.0430.0004.4443.7523.874-0.001-0.052-0.0690.000
4A6ILE0-0.048-0.0275.5476.1216.1210.0000.0000.0000.000
5A7ILE00.0110.0138.1450.3470.3470.0000.0000.0000.000
6A8ALA00.0360.02011.7232.2162.2160.0000.0000.0000.000
7A9GLY00.005-0.01413.5060.7080.7080.0000.0000.0000.000
8A10ASN00.0280.00617.2471.3921.3920.0000.0000.0000.000
9A11TRP00.013-0.00819.3801.1951.1950.0000.0000.0000.000
10A12LYS10.8620.92421.58727.37827.3780.0000.0000.0000.000
11A13MET00.0310.02824.3990.3260.3260.0000.0000.0000.000
12A14ASN0-0.0060.00025.970-0.053-0.0530.0000.0000.0000.000
13A15LEU00.0030.02425.7940.4310.4310.0000.0000.0000.000
14A16SER0-0.002-0.03429.4700.2190.2190.0000.0000.0000.000
15A17LEU00.0430.01431.022-0.462-0.4620.0000.0000.0000.000
16A18LYS10.9640.97831.85516.42716.4270.0000.0000.0000.000
17A19GLU-1-0.833-0.88229.956-19.096-19.0960.0000.0000.0000.000
18A20ALA00.0150.01127.353-0.574-0.5740.0000.0000.0000.000
19A21VAL00.0230.01227.396-0.649-0.6490.0000.0000.0000.000
20A22PHE0-0.021-0.00529.357-0.251-0.2510.0000.0000.0000.000
21A23LEU0-0.036-0.00123.723-0.220-0.2200.0000.0000.0000.000
22A24ALA00.0320.01424.597-0.848-0.8480.0000.0000.0000.000
23A25HIS00.0380.01725.294-0.979-0.9790.0000.0000.0000.000
24A26SER0-0.004-0.01626.607-0.305-0.3050.0000.0000.0000.000
25A27ILE0-0.049-0.03320.558-0.706-0.7060.0000.0000.0000.000
26A28ARG10.8490.92222.44622.65022.6500.0000.0000.0000.000
27A29GLU-1-0.942-0.96824.083-21.054-21.0540.0000.0000.0000.000
28A30LYS10.9060.95922.67023.61623.6160.0000.0000.0000.000
29A31ILE00.0060.00117.438-0.544-0.5440.0000.0000.0000.000
30A32PRO00.0160.02618.487-1.728-1.7280.0000.0000.0000.000
31A33SER00.0170.01918.798-0.922-0.9220.0000.0000.0000.000
32A34ILE0-0.064-0.03718.4110.2270.2270.0000.0000.0000.000
33A35SER0-0.021-0.01614.360-1.066-1.0660.0000.0000.0000.000
34A36LYS10.8470.92613.70130.25530.2550.0000.0000.0000.000
35A37ASP-1-0.876-0.9318.440-49.947-49.9470.0000.0000.0000.000
36A38LYS10.7810.8888.75939.38239.3820.0000.0000.0000.000
37A39VAL00.016-0.0048.3743.8763.8760.0000.0000.0000.000
38A40SER00.0090.01010.7020.2100.2100.0000.0000.0000.000
39A41MET0-0.020-0.00311.2970.5020.5020.0000.0000.0000.000
40A42VAL0-0.013-0.00114.7900.3830.3830.0000.0000.0000.000
41A43PHE00.0400.01914.511-0.065-0.0650.0000.0000.0000.000
42A44PRO00.0160.01419.8370.8030.8030.0000.0000.0000.000
43A45SER00.012-0.00923.627-0.115-0.1150.0000.0000.0000.000
44A46THR00.020-0.01026.3640.0200.0200.0000.0000.0000.000
45A47LEU0-0.0180.00127.2620.1270.1270.0000.0000.0000.000
46A48HIS0-0.007-0.02327.6890.6960.6960.0000.0000.0000.000
47A49LEU0-0.0240.00623.172-0.106-0.1060.0000.0000.0000.000
48A50GLU-1-0.795-0.88926.623-19.108-19.1080.0000.0000.0000.000
49A51ASN0-0.039-0.02529.052-0.053-0.0530.0000.0000.0000.000
50A52VAL00.031-0.00324.010-0.072-0.0720.0000.0000.0000.000
51A53SER0-0.040-0.01824.388-0.858-0.8580.0000.0000.0000.000
52A54LYS10.9040.94125.42618.40418.4040.0000.0000.0000.000
53A55ILE0-0.059-0.00526.4660.2870.2870.0000.0000.0000.000
54A56LEU0-0.035-0.02921.114-0.190-0.1900.0000.0000.0000.000
55A57GLU-1-0.864-0.90322.563-23.164-23.1640.0000.0000.0000.000
56A58GLY00.0070.01223.0860.6200.6200.0000.0000.0000.000
57A59SER0-0.081-0.06121.207-0.003-0.0030.0000.0000.0000.000
58A60SER00.0250.00215.7430.3260.3260.0000.0000.0000.000
59A61VAL0-0.043-0.01316.001-2.207-2.2070.0000.0000.0000.000
60A62ILE00.0220.01312.6061.2391.2390.0000.0000.0000.000
61A63VAL00.0310.00816.774-0.277-0.2770.0000.0000.0000.000
62A64GLY00.0070.00017.783-0.511-0.5110.0000.0000.0000.000
63A65ALA00.0160.00118.7111.0721.0720.0000.0000.0000.000
64A66GLN0-0.071-0.06819.895-0.617-0.6170.0000.0000.0000.000
65A67ASN00.0070.00921.593-0.769-0.7690.0000.0000.0000.000
66A68CYS0-0.055-0.00922.703-0.233-0.2330.0000.0000.0000.000
67A69TYR00.0490.03224.334-0.328-0.3280.0000.0000.0000.000
68A70HIS10.8430.92324.78221.31021.3100.0000.0000.0000.000
69A71SER0-0.028-0.03025.9720.6730.6730.0000.0000.0000.000
70A72GLY00.0740.06727.941-0.509-0.5090.0000.0000.0000.000
71A73LEU0-0.046-0.02829.5300.3230.3230.0000.0000.0000.000
72A74ALA00.0160.01232.6530.4440.4440.0000.0000.0000.000
73A75ALA0-0.012-0.00334.849-0.105-0.1050.0000.0000.0000.000
74A76PHE00.0100.00032.5080.1200.1200.0000.0000.0000.000
75A77THR00.013-0.01033.853-0.376-0.3760.0000.0000.0000.000
76A78GLY0-0.0030.00634.3510.0360.0360.0000.0000.0000.000
77A79GLU-1-0.913-0.94228.369-21.402-21.4020.0000.0000.0000.000
78A80THR0-0.036-0.02526.8550.2080.2080.0000.0000.0000.000
79A81SER00.004-0.01426.963-0.749-0.7490.0000.0000.0000.000
80A82PRO00.041-0.01222.6510.0040.0040.0000.0000.0000.000
81A83ASP-1-0.836-0.89724.637-21.419-21.4190.0000.0000.0000.000
82A84GLN00.0590.02127.403-0.301-0.3010.0000.0000.0000.000
83A85LEU0-0.055-0.01622.253-0.071-0.0710.0000.0000.0000.000
84A86LYS10.8600.91822.16324.98724.9870.0000.0000.0000.000
85A87GLU-1-0.957-0.96024.474-19.209-19.2090.0000.0000.0000.000
86A88ILE0-0.034-0.01325.4400.1050.1050.0000.0000.0000.000
87A89GLY00.0450.03123.349-0.351-0.3510.0000.0000.0000.000
88A90VAL0-0.039-0.00420.728-1.440-1.4400.0000.0000.0000.000
89A91LYS10.8810.92217.72330.12730.1270.0000.0000.0000.000
90A92VAL00.007-0.00313.845-1.649-1.6490.0000.0000.0000.000
91A93VAL0-0.008-0.00416.2171.9111.9110.0000.0000.0000.000
92A94MET0-0.063-0.00216.115-1.698-1.6980.0000.0000.0000.000
93A95VAL0-0.002-0.00516.5901.9121.9120.0000.0000.0000.000
94A96GLY00.0730.01916.851-1.638-1.6380.0000.0000.0000.000
95A97HIS0-0.0170.00317.7580.4560.4560.0000.0000.0000.000
96A98SER0-0.024-0.04919.1761.9651.9650.0000.0000.0000.000
97A99GLU-1-0.813-0.89221.102-23.869-23.8690.0000.0000.0000.000
98A100ARG10.8840.92522.55024.33324.3330.0000.0000.0000.000
99A101ARG10.8100.88217.46230.33830.3380.0000.0000.0000.000
100A102GLN0-0.038-0.00924.1590.2080.2080.0000.0000.0000.000
101A103PHE0-0.024-0.02526.8300.8220.8220.0000.0000.0000.000
102A104LEU0-0.051-0.02227.0560.5550.5550.0000.0000.0000.000
103A105GLY00.0200.03128.2700.2430.2430.0000.0000.0000.000
104A106GLU-1-0.843-0.90623.665-24.116-24.1160.0000.0000.0000.000
105A107SER00.0530.02124.077-0.988-0.9880.0000.0000.0000.000
106A108ASN00.0520.00020.950-1.182-1.1820.0000.0000.0000.000
107A109PHE00.0220.01521.672-0.823-0.8230.0000.0000.0000.000
108A110PHE00.0130.01424.145-0.279-0.2790.0000.0000.0000.000
109A111CYS0-0.013-0.01319.303-0.484-0.4840.0000.0000.0000.000
110A112ASN0-0.042-0.02719.3640.2480.2480.0000.0000.0000.000
111A113ASP-1-0.834-0.91620.910-23.059-23.0590.0000.0000.0000.000
112A114LYS10.7570.86821.22024.47824.4780.0000.0000.0000.000
113A115ILE0-0.021-0.00515.810-0.364-0.3640.0000.0000.0000.000
114A116ARG10.8570.91918.24726.47826.4780.0000.0000.0000.000
115A117PHE00.0110.00120.560-0.222-0.2220.0000.0000.0000.000
116A118LEU00.0210.00518.0400.1510.1510.0000.0000.0000.000
117A119LEU0-0.027-0.00913.522-0.200-0.2000.0000.0000.0000.000
118A120LYS0-0.0220.00117.417-0.190-0.1900.0000.0000.0000.000
119A121ASN0-0.046-0.01620.6971.3301.3300.0000.0000.0000.000
120A122GLU-1-0.917-0.95417.660-27.025-27.0250.0000.0000.0000.000
121A123PHE0-0.027-0.01017.170-0.278-0.2780.0000.0000.0000.000
122A124THR0-0.042-0.01310.943-2.319-2.3190.0000.0000.0000.000
123A125VAL0-0.016-0.01412.5892.2992.2990.0000.0000.0000.000
124A126LEU00.0060.00011.251-3.229-3.2290.0000.0000.0000.000
125A127TYR0-0.027-0.03912.1303.6633.6630.0000.0000.0000.000
126A128CYS0-0.047-0.01012.299-3.104-3.1040.0000.0000.0000.000
127A129VAL00.0200.01812.4841.8841.8840.0000.0000.0000.000
128A130GLY00.033-0.00515.113-1.500-1.5000.0000.0000.0000.000
129A131GLU-1-0.729-0.78117.505-29.956-29.9560.0000.0000.0000.000
130A132THR0-0.010-0.04020.6770.1530.1530.0000.0000.0000.000
131A133LEU0-0.006-0.00723.899-0.300-0.3000.0000.0000.0000.000
132A134SER00.0200.01825.5410.0510.0510.0000.0000.0000.000
133A135GLU-1-0.797-0.86623.873-24.304-24.3040.0000.0000.0000.000
134A136ARG10.8710.92016.89129.76029.7600.0000.0000.0000.000
135A137GLU-1-0.887-0.96123.775-20.302-20.3020.0000.0000.0000.000
136A138SER0-0.065-0.03527.3150.8170.8170.0000.0000.0000.000
137A139GLY0-0.0020.00524.6040.1970.1970.0000.0000.0000.000
138A140LYS10.9110.95623.99120.49820.4980.0000.0000.0000.000
139A141THR0-0.031-0.03717.525-0.082-0.0820.0000.0000.0000.000
140A142LEU00.005-0.00316.862-1.121-1.1210.0000.0000.0000.000
141A143GLU-1-0.873-0.93319.337-23.405-23.4050.0000.0000.0000.000
142A144VAL00.0120.01520.011-0.282-0.2820.0000.0000.0000.000
143A145LEU0-0.0040.00314.895-0.643-0.6430.0000.0000.0000.000
144A146SER0-0.012-0.02016.454-0.674-0.6740.0000.0000.0000.000
145A147SER0-0.007-0.01217.752-0.030-0.0300.0000.0000.0000.000
146A148GLN00.005-0.00917.310-1.455-1.4550.0000.0000.0000.000
147A149ILE00.0140.02712.304-0.628-0.6280.0000.0000.0000.000
148A150ARG0-0.035-0.02615.2550.6880.6880.0000.0000.0000.000
149A151GLU-1-0.927-0.96318.392-23.556-23.5560.0000.0000.0000.000
150A152GLY00.0370.02217.7550.5280.5280.0000.0000.0000.000
151A153LEU00.000-0.00512.291-0.277-0.2770.0000.0000.0000.000
152A154LYS10.9220.97616.82226.17026.1700.0000.0000.0000.000
153A155GLY00.0490.01220.2600.6960.6960.0000.0000.0000.000
154A156ILE0-0.0450.00315.5220.9830.9830.0000.0000.0000.000
155A157ASP-1-0.812-0.90717.598-32.513-32.5130.0000.0000.0000.000
156A158SER0-0.014-0.01114.343-1.330-1.3300.0000.0000.0000.000
157A159VAL00.0020.00113.467-3.344-3.3440.0000.0000.0000.000
158A160PHE00.019-0.00213.579-1.483-1.4830.0000.0000.0000.000
159A161PHE0-0.001-0.0089.821-1.509-1.5090.0000.0000.0000.000
160A162SER0-0.0210.0038.203-4.487-4.4870.0000.0000.0000.000
161A163ASN0-0.046-0.0208.479-5.294-5.2940.0000.0000.0000.000
162A164LEU0-0.0140.0009.5462.9012.9010.0000.0000.0000.000
163A165ILE0-0.043-0.0257.259-6.664-6.6640.0000.0000.0000.000
164A166LEU00.0130.0107.3315.5265.5260.0000.0000.0000.000
165A167ALA00.0130.0018.449-3.611-3.6110.0000.0000.0000.000
166A168TYR00.008-0.01510.8602.7802.7800.0000.0000.0000.000
167A169GLU-1-0.754-0.84312.575-31.073-31.0730.0000.0000.0000.000
168A170PRO0-0.0180.00815.2331.1491.1490.0000.0000.0000.000
169A171VAL00.037-0.00117.5651.4091.4090.0000.0000.0000.000
170A172TRP0-0.042-0.02217.5971.9601.9600.0000.0000.0000.000
171A173ALA0-0.0130.01219.9721.0741.0740.0000.0000.0000.000
172A174ILE0-0.060-0.02219.0500.2010.2010.0000.0000.0000.000
173A175GLY0-0.007-0.00522.8940.6960.6960.0000.0000.0000.000
174A176THR0-0.040-0.02724.9090.8620.8620.0000.0000.0000.000
175A177GLY0-0.0170.00226.6230.6170.6170.0000.0000.0000.000
176A178LYS10.8540.92323.93821.41421.4140.0000.0000.0000.000
177A179VAL00.010-0.00720.984-0.380-0.3800.0000.0000.0000.000
178A180ALA0-0.0040.00716.7870.0770.0770.0000.0000.0000.000
179A181THR0-0.002-0.00816.812-0.700-0.7000.0000.0000.0000.000
180A182PRO00.0570.01912.109-0.821-0.8210.0000.0000.0000.000
181A183SER00.0680.03011.735-1.645-1.6450.0000.0000.0000.000
182A184GLN0-0.008-0.00713.062-0.617-0.6170.0000.0000.0000.000
183A185ALA0-0.0210.00811.0760.4040.4040.0000.0000.0000.000
184A186GLN00.0180.0046.349-6.035-6.0350.0000.0000.0000.000
185A187GLU-1-0.844-0.9378.807-48.276-48.2760.0000.0000.0000.000
186A188VAL0-0.040-0.01011.2770.8790.8790.0000.0000.0000.000
187A189HIS0-0.025-0.0326.0436.1356.1350.0000.0000.0000.000
188A190SER0-0.0280.0057.292-4.766-4.7660.0000.0000.0000.000
189A191PHE00.0030.0008.2130.0130.0130.0000.0000.0000.000
190A192ILE00.004-0.0048.7950.9190.9190.0000.0000.0000.000
192A194LYS10.8840.9297.97040.04540.0450.0000.0000.0000.000
193A195GLU-1-0.839-0.86510.425-32.130-32.1300.0000.0000.0000.000
194A196ILE00.013-0.0018.4121.8271.8270.0000.0000.0000.000
195A197SER0-0.078-0.0539.2062.0362.0360.0000.0000.0000.000
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