FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: RQ278

Calculation Name: 1V9S-B-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1V9S

Chain ID: B

ChEMBL ID:

UniProt ID: Q72J35

Base Structure: X-ray

Registration Date: 2025-10-03

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 208
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2298320.22049
FMO2-HF: Nuclear repulsion 2218813.972014
FMO2-HF: Total energy -79506.248476
FMO2-MP2: Total energy -79738.546737


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-142.966-136.84929.313-9.481-25.949-0.115
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.819 / q_NPA : 0.941
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ILE00.0360.0162.260-3.119-0.0842.446-1.889-3.592-0.014
4A4THR0-0.034-0.0334.3570.9921.0980.000-0.033-0.0730.000
133A133LEU00.0250.0294.4050.1740.256-0.001-0.004-0.0760.000
166A166LEU0-0.036-0.0322.539-3.001-2.0840.613-0.316-1.214-0.001
167A167GLU-1-0.912-0.9602.737-33.768-32.3310.852-0.726-1.564-0.013
169A169ILE0-0.020-0.0192.854-0.391-0.5303.057-0.578-2.3400.000
170A170ALA0-0.005-0.0172.186-3.869-4.9228.903-2.941-4.908-0.012
171A171LYS10.8580.9353.07125.13420.0820.1325.435-0.515-0.002
174A174PRO00.0510.0302.548-7.523-5.7910.402-0.782-1.352-0.005
175A175ASP-1-0.931-0.9702.166-71.039-67.7855.621-4.881-3.994-0.046
176A176THR0-0.074-0.0382.7774.6295.8870.284-0.452-1.091-0.001
177A177GLU-1-0.822-0.9092.508-48.998-47.6482.702-1.565-2.487-0.019
178A178VAL00.002-0.0172.6426.3055.4814.303-0.734-2.745-0.002
179A179VAL00.0000.0014.527-0.703-0.689-0.001-0.0150.0020.000
5A5LEU00.0100.0097.8761.2691.2690.0000.0000.0000.000
6A6VAL0-0.029-0.0219.8910.8940.8940.0000.0000.0000.000
7A7ASP-1-0.854-0.91013.087-14.901-14.9010.0000.0000.0000.000
8A8HIS00.0740.01615.8800.5440.5440.0000.0000.0000.000
9A9PRO00.0260.02419.2240.0350.0350.0000.0000.0000.000
10A10LEU0-0.014-0.01922.3090.3010.3010.0000.0000.0000.000
11A11VAL00.0120.01315.6750.2490.2490.0000.0000.0000.000
12A12GLN0-0.020-0.02018.2370.5820.5820.0000.0000.0000.000
13A13HIS00.0140.01319.8630.4760.4760.0000.0000.0000.000
14A14LYS10.8330.89321.41011.39111.3910.0000.0000.0000.000
15A15LEU00.0390.02015.7260.1980.1980.0000.0000.0000.000
16A16ALA0-0.011-0.00319.9050.0940.0940.0000.0000.0000.000
17A17HIS0-0.017-0.01422.5870.2910.2910.0000.0000.0000.000
18A18LEU0-0.0120.02019.0000.2080.2080.0000.0000.0000.000
19A19ARG10.7990.84415.32214.89814.8980.0000.0000.0000.000
20A20ASP-1-0.816-0.86821.662-9.349-9.3490.0000.0000.0000.000
21A21LYS10.9820.99025.4919.3309.3300.0000.0000.0000.000
22A22ARG10.8070.87926.7469.1709.1700.0000.0000.0000.000
23A23THR0-0.042-0.01626.1000.3820.3820.0000.0000.0000.000
24A24GLY00.0610.03327.441-0.212-0.2120.0000.0000.0000.000
25A25PRO00.036-0.00927.429-0.130-0.1300.0000.0000.0000.000
26A26LYS10.7650.88727.8548.6588.6580.0000.0000.0000.000
27A27ASP-1-0.791-0.90228.241-9.220-9.2200.0000.0000.0000.000
28A28PHE0-0.010-0.00720.141-0.400-0.4000.0000.0000.0000.000
29A29ARG10.9170.96123.3789.3719.3710.0000.0000.0000.000
30A30GLU-1-0.845-0.90723.959-9.586-9.5860.0000.0000.0000.000
31A31LEU00.0160.00123.071-0.328-0.3280.0000.0000.0000.000
32A32ALA00.0040.00219.694-0.567-0.5670.0000.0000.0000.000
33A33GLU-1-0.889-0.92519.593-11.356-11.3560.0000.0000.0000.000
34A34GLU-1-0.832-0.90721.127-11.150-11.1500.0000.0000.0000.000
35A35VAL0-0.008-0.01116.267-0.338-0.3380.0000.0000.0000.000
36A36ALA00.0010.01416.525-0.753-0.7530.0000.0000.0000.000
37A37MET0-0.037-0.01917.425-0.373-0.3730.0000.0000.0000.000
38A38LEU0-0.030-0.01818.799-0.217-0.2170.0000.0000.0000.000
39A39MET0-0.044-0.01611.174-0.151-0.1510.0000.0000.0000.000
40A40ALA00.0070.00214.556-1.049-1.0490.0000.0000.0000.000
41A41TYR0-0.0180.00216.545-0.094-0.0940.0000.0000.0000.000
42A42GLU-1-0.812-0.87513.378-18.508-18.5080.0000.0000.0000.000
43A43ALA0-0.023-0.01312.216-0.899-0.8990.0000.0000.0000.000
44A44MET0-0.015-0.01613.190-0.497-0.4970.0000.0000.0000.000
45A45ARG10.8450.89915.76817.54817.5480.0000.0000.0000.000
46A46ASP-1-0.787-0.86112.502-22.326-22.3260.0000.0000.0000.000
47A47LEU0-0.052-0.03116.160-0.249-0.2490.0000.0000.0000.000
48A48GLU-1-0.884-0.91918.542-14.243-14.2430.0000.0000.0000.000
49A49LEU0-0.042-0.03320.8770.5160.5160.0000.0000.0000.000
50A50GLU-1-0.882-0.93824.668-11.082-11.0820.0000.0000.0000.000
51A51GLU-1-0.912-0.96127.832-9.662-9.6620.0000.0000.0000.000
52A52THR00.0100.00531.3630.2290.2290.0000.0000.0000.000
53A53THR0-0.033-0.03034.4790.0560.0560.0000.0000.0000.000
54A54VAL0-0.0110.00436.4160.0040.0040.0000.0000.0000.000
55A55GLU-1-0.913-0.95839.299-6.948-6.9480.0000.0000.0000.000
56A56THR0-0.0140.00741.080-0.126-0.1260.0000.0000.0000.000
57A57PRO00.001-0.00942.7850.1200.1200.0000.0000.0000.000
58A58ILE0-0.079-0.04045.5390.1370.1370.0000.0000.0000.000
59A59ALA00.0280.01144.9940.1320.1320.0000.0000.0000.000
60A60PRO00.0320.01243.215-0.142-0.1420.0000.0000.0000.000
61A61ALA00.0050.01138.8480.0090.0090.0000.0000.0000.000
62A62ARG10.8480.91835.0398.7108.7100.0000.0000.0000.000
63A63VAL00.000-0.00233.271-0.056-0.0560.0000.0000.0000.000
64A64LYS10.9530.97027.82211.03211.0320.0000.0000.0000.000
65A65VAL0-0.0090.00528.4810.1270.1270.0000.0000.0000.000
66A66LEU0-0.005-0.00622.070-0.233-0.2330.0000.0000.0000.000
67A67SER0-0.0080.00723.2300.3190.3190.0000.0000.0000.000
68A68GLY00.0130.01023.215-0.478-0.4780.0000.0000.0000.000
69A69LYS10.7580.88422.63912.17612.1760.0000.0000.0000.000
70A70LYS10.8960.95222.15110.18410.1840.0000.0000.0000.000
71A71LEU00.0640.04718.2390.0220.0220.0000.0000.0000.000
72A72ALA00.001-0.00517.2420.7100.7100.0000.0000.0000.000
73A73LEU0-0.0040.00616.873-0.949-0.9490.0000.0000.0000.000
74A74VAL00.013-0.00415.3370.8620.8620.0000.0000.0000.000
75A75ALA00.0160.01715.709-0.821-0.8210.0000.0000.0000.000
76A76ILE0-0.0050.00412.4160.3160.3160.0000.0000.0000.000
77A77LEU0-0.070-0.01916.8400.3920.3920.0000.0000.0000.000
78A78ARG10.9270.92619.22410.66610.6660.0000.0000.0000.000
79A79ALA00.0370.00717.2910.2240.2240.0000.0000.0000.000
80A80GLY00.0650.02716.8470.0140.0140.0000.0000.0000.000
81A81LEU0-0.036-0.02217.564-0.072-0.0720.0000.0000.0000.000
82A82VAL00.0170.01619.2610.2050.2050.0000.0000.0000.000
83A83MET00.007-0.00413.2210.0060.0060.0000.0000.0000.000
84A84VAL0-0.018-0.00218.652-0.134-0.1340.0000.0000.0000.000
85A85GLU-1-0.899-0.95220.685-10.821-10.8210.0000.0000.0000.000
86A86GLY00.0200.00821.6210.2590.2590.0000.0000.0000.000
87A87ILE0-0.027-0.01816.3750.1370.1370.0000.0000.0000.000
88A88LEU0-0.008-0.00620.9020.1200.1200.0000.0000.0000.000
89A89LYS10.8490.91224.17210.86710.8670.0000.0000.0000.000
90A90LEU0-0.054-0.00720.9310.2570.2570.0000.0000.0000.000
91A91VAL0-0.017-0.01220.8040.1480.1480.0000.0000.0000.000
92A92PRO00.0610.03324.209-0.157-0.1570.0000.0000.0000.000
93A93HIS0-0.045-0.02926.5520.1110.1110.0000.0000.0000.000
94A94ALA0-0.0080.00521.573-0.054-0.0540.0000.0000.0000.000
95A95ARG10.8580.92622.19811.50011.5000.0000.0000.0000.000
96A96VAL00.0670.03021.216-0.612-0.6120.0000.0000.0000.000
97A97GLY0-0.030-0.01220.0100.3110.3110.0000.0000.0000.000
98A98HIS0-0.031-0.01520.247-0.100-0.1000.0000.0000.0000.000
99A99ILE00.0350.01215.2680.2540.2540.0000.0000.0000.000
100A100GLY0-0.003-0.00718.908-0.163-0.1630.0000.0000.0000.000
101A101LEU0-0.0030.00015.3650.0810.0810.0000.0000.0000.000
102A102TYR00.0240.01619.5270.1250.1250.0000.0000.0000.000
103A103ARG10.8320.92215.00214.30714.3070.0000.0000.0000.000
104A104ASP-1-0.800-0.89519.099-10.900-10.9000.0000.0000.0000.000
105A105PRO0-0.028-0.02420.810-0.420-0.4200.0000.0000.0000.000
106A106GLU-1-0.917-0.94722.956-10.328-10.3280.0000.0000.0000.000
107A107SER0-0.080-0.05821.424-0.449-0.4490.0000.0000.0000.000
108A108LEU0-0.037-0.01516.561-0.773-0.7730.0000.0000.0000.000
109A109ASN0-0.018-0.00816.215-1.604-1.6040.0000.0000.0000.000
110A110PRO0-0.057-0.02515.0380.5080.5080.0000.0000.0000.000
111A111VAL00.0360.02317.9060.0590.0590.0000.0000.0000.000
112A112GLN0-0.001-0.01219.926-0.324-0.3240.0000.0000.0000.000
113A113TYR0-0.005-0.00821.5080.3280.3280.0000.0000.0000.000
114A114TYR0-0.011-0.01322.8910.4690.4690.0000.0000.0000.000
115A115ILE00.0020.00518.728-0.562-0.5620.0000.0000.0000.000
116A116LYS10.9190.96922.07011.26211.2620.0000.0000.0000.000
117A117LEU00.0350.02317.666-0.485-0.4850.0000.0000.0000.000
118A118PRO00.007-0.00120.1300.5740.5740.0000.0000.0000.000
119A119PRO00.0320.02422.129-0.337-0.3370.0000.0000.0000.000
120A120ASP-1-0.787-0.89523.077-11.763-11.7630.0000.0000.0000.000
121A121ILE0-0.033-0.01216.785-0.312-0.3120.0000.0000.0000.000
122A122ALA00.0330.01917.313-0.742-0.7420.0000.0000.0000.000
123A123GLU-1-0.897-0.95818.263-12.737-12.7370.0000.0000.0000.000
124A124ARG10.7680.87318.45713.41913.4190.0000.0000.0000.000
125A125ARG10.8610.93512.46819.99219.9920.0000.0000.0000.000
126A126ALA00.0250.00013.5031.1031.1030.0000.0000.0000.000
127A127PHE00.0230.00812.372-1.573-1.5730.0000.0000.0000.000
128A128LEU0-0.0100.0049.7101.3401.3400.0000.0000.0000.000
129A129LEU0-0.007-0.01511.613-1.026-1.0260.0000.0000.0000.000
130A130ASP-1-0.802-0.93611.706-15.855-15.8550.0000.0000.0000.000
131A131PRO0-0.002-0.00611.775-0.899-0.8990.0000.0000.0000.000
132A132MET0-0.0160.00812.396-0.179-0.1790.0000.0000.0000.000
134A134ALA00.016-0.0128.853-0.602-0.6020.0000.0000.0000.000
135A135THR00.0520.0289.613-1.101-1.1010.0000.0000.0000.000
136A136GLY00.0210.0037.900-0.953-0.9530.0000.0000.0000.000
137A137GLY0-0.018-0.0048.637-0.377-0.3770.0000.0000.0000.000
138A138SER00.0090.00312.135-0.238-0.2380.0000.0000.0000.000
139A139ALA00.0580.0178.3270.1180.1180.0000.0000.0000.000
140A140SER0-0.003-0.0148.759-0.634-0.6340.0000.0000.0000.000
141A141LEU00.0320.0339.6230.0090.0090.0000.0000.0000.000
142A142ALA00.011-0.00512.1030.3900.3900.0000.0000.0000.000
143A143LEU00.0090.0016.3970.5420.5420.0000.0000.0000.000
144A144SER0-0.034-0.02810.544-0.111-0.1110.0000.0000.0000.000
145A145LEU0-0.033-0.01412.8810.6780.6780.0000.0000.0000.000
146A146LEU00.0020.00311.7990.9530.9530.0000.0000.0000.000
147A147LYS10.9790.9969.60626.92626.9260.0000.0000.0000.000
148A148GLU-1-0.851-0.91413.393-14.375-14.3750.0000.0000.0000.000
149A149ARG10.7400.84616.60715.22015.2200.0000.0000.0000.000
150A150GLY00.0230.01516.6380.5420.5420.0000.0000.0000.000
151A151ALA0-0.025-0.00613.433-0.048-0.0480.0000.0000.0000.000
152A152THR0-0.016-0.01611.500-1.309-1.3090.0000.0000.0000.000
153A153GLY00.0170.0079.7400.7810.7810.0000.0000.0000.000
154A154VAL0-0.035-0.0098.7010.9240.9240.0000.0000.0000.000
155A155LYS10.7760.8937.51422.62022.6200.0000.0000.0000.000
156A156LEU0-0.0080.0005.5832.4642.4640.0000.0000.0000.000
157A157MET0-0.046-0.0177.783-1.150-1.1500.0000.0000.0000.000
158A158ALA00.0050.0078.7171.1901.1900.0000.0000.0000.000
159A159ILE0-0.004-0.00410.615-0.302-0.3020.0000.0000.0000.000
160A160LEU0-0.023-0.00811.716-0.005-0.0050.0000.0000.0000.000
161A161ALA00.0230.0076.503-0.394-0.3940.0000.0000.0000.000
162A162ALA00.0230.0248.6530.7020.7020.0000.0000.0000.000
163A163PRO00.0200.0047.039-2.091-2.0910.0000.0000.0000.000
164A164GLU-1-0.811-0.9126.454-20.910-20.9100.0000.0000.0000.000
165A165GLY00.0410.0206.677-0.864-0.8640.0000.0000.0000.000
168A168ARG10.8430.9215.48320.30020.3000.0000.0000.0000.000
172A172ASP-1-0.806-0.8716.523-23.058-23.0580.0000.0000.0000.000
173A173HIS0-0.052-0.0215.5431.0961.0960.0000.0000.0000.000
180A180VAL00.003-0.0126.3581.0511.0510.0000.0000.0000.000
181A181ALA00.0110.0139.0450.4000.4000.0000.0000.0000.000
182A182ALA0-0.026-0.01611.8290.7410.7410.0000.0000.0000.000
183A183ILE0-0.028-0.0107.275-1.152-1.1520.0000.0000.0000.000
184A184ASP-1-0.748-0.83910.300-14.961-14.9610.0000.0000.0000.000
185A185GLU-1-0.930-0.97011.851-14.846-14.8460.0000.0000.0000.000
186A186ARG10.9120.95312.89012.84612.8460.0000.0000.0000.000
187A187LEU0-0.0130.01812.0590.2110.2110.0000.0000.0000.000
188A188ASN0-0.007-0.00615.2190.1890.1890.0000.0000.0000.000
189A189ASP-1-0.818-0.90518.511-11.606-11.6060.0000.0000.0000.000
190A190HIS10.8570.92420.68011.21511.2150.0000.0000.0000.000
191A191GLY00.0930.04616.336-0.091-0.0910.0000.0000.0000.000
192A192TYR0-0.093-0.06915.567-0.635-0.6350.0000.0000.0000.000
193A193ILE0-0.002-0.00511.4760.0920.0920.0000.0000.0000.000
194A194VAL0-0.0420.00314.9660.9180.9180.0000.0000.0000.000
195A195PRO00.0700.00415.727-0.688-0.6880.0000.0000.0000.000
196A196GLY0-0.0020.01216.0310.4820.4820.0000.0000.0000.000
197A197LEU00.003-0.01117.0560.2030.2030.0000.0000.0000.000
198A198GLY00.0000.01219.6540.5380.5380.0000.0000.0000.000
199A199ASP-1-0.778-0.88419.107-12.721-12.7210.0000.0000.0000.000
200A200ALA00.0530.01517.7620.3650.3650.0000.0000.0000.000
201A201GLY00.0020.00419.7440.2380.2380.0000.0000.0000.000
202A202ASP-1-0.795-0.88721.632-10.040-10.0400.0000.0000.0000.000
203A203ARG10.7460.85422.60111.37711.3770.0000.0000.0000.000
204A204ILE0-0.0080.00519.9060.2040.2040.0000.0000.0000.000
205A205TYR0-0.047-0.03523.3570.3620.3620.0000.0000.0000.000
206A206GLY0-0.0220.00527.4260.3050.3050.0000.0000.0000.000
207A207THR0-0.057-0.02426.5850.1800.1800.0000.0000.0000.000
208A208LYS0-0.022-0.00426.9290.2870.2870.0000.0000.0000.000