FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: VV7K1

Calculation Name: 2CC1-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2CC1

Chain ID: A

ChEMBL ID:

UniProt ID: Q59517

Base Structure: X-ray

Registration Date: 2025-10-03

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 262
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -3381436.046467
FMO2-HF: Nuclear repulsion 3281933.002146
FMO2-HF: Total energy -99503.044321
FMO2-MP2: Total energy -99790.818416


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:27:ALA)


Summations of interaction energy for fragment #1(A:27:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-141.775-134.6351.966-4.149-4.958-0.039
Interaction energy analysis for fragmet #1(A:27:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.837 / q_NPA : 0.911
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A29ILE00.0710.0313.5133.3174.5330.005-0.418-0.803-0.001
4A30ASP-1-0.911-0.9702.125-55.471-53.5281.891-1.463-2.371-0.017
5A31ASP-1-0.888-0.9483.025-82.288-78.4120.071-2.260-1.687-0.021
6A32GLN0-0.027-0.0235.2705.4215.526-0.001-0.008-0.0970.000
7A33LEU00.0200.0096.9504.5784.5780.0000.0000.0000.000
8A34ALA0-0.0080.0017.2343.6683.6680.0000.0000.0000.000
9A35GLU-1-0.805-0.8768.970-19.358-19.3580.0000.0000.0000.000
10A36LEU00.000-0.00211.3932.3752.3750.0000.0000.0000.000
11A37GLU-1-0.797-0.87911.522-24.817-24.8170.0000.0000.0000.000
12A38ARG10.7920.86613.13521.79321.7930.0000.0000.0000.000
13A39ARG10.6450.76414.90419.36219.3620.0000.0000.0000.000
14A40ASP-1-0.774-0.86017.012-15.870-15.8700.0000.0000.0000.000
15A41ASN0-0.049-0.00918.0190.6230.6230.0000.0000.0000.000
16A42VAL00.0030.00815.6770.7620.7620.0000.0000.0000.000
17A43LEU0-0.026-0.00214.830-1.104-1.1040.0000.0000.0000.000
18A44ILE00.005-0.01511.9641.2191.2190.0000.0000.0000.000
19A45GLY00.0200.01511.881-2.058-2.0580.0000.0000.0000.000
20A46LEU0-0.024-0.0238.8430.7290.7290.0000.0000.0000.000
21A47TYR0-0.008-0.01111.237-1.763-1.7630.0000.0000.0000.000
22A48ALA00.0320.02311.6151.4551.4550.0000.0000.0000.000
23A49ALA0-0.007-0.02111.898-1.595-1.5950.0000.0000.0000.000
24A50ASN00.0280.02514.0071.9051.9050.0000.0000.0000.000
25A51LEU0-0.060-0.04515.946-0.013-0.0130.0000.0000.0000.000
26A52GLN0-0.038-0.02118.8950.3440.3440.0000.0000.0000.000
27A53SER00.0120.00215.0940.1710.1710.0000.0000.0000.000
28A54GLY00.0000.01316.192-0.330-0.3300.0000.0000.0000.000
29A55ARG10.8990.9626.09929.11429.1140.0000.0000.0000.000
30A56ARG10.9600.9838.19326.74426.7440.0000.0000.0000.000
31A57ILE0-0.041-0.0276.204-2.912-2.9120.0000.0000.0000.000
32A58THR0-0.004-0.0106.7763.9023.9020.0000.0000.0000.000
33A59HIS10.8850.9566.13531.10331.1030.0000.0000.0000.000
34A61ARG10.8140.8778.54526.65726.6570.0000.0000.0000.000
35A62PRO0-0.0110.0069.8231.5741.5740.0000.0000.0000.000
36A63ASP-1-0.880-0.95512.623-18.533-18.5330.0000.0000.0000.000
37A64GLU-1-0.876-0.92913.221-21.554-21.5540.0000.0000.0000.000
38A65MET0-0.048-0.01116.5520.3780.3780.0000.0000.0000.000
39A66PHE00.007-0.00115.5910.0650.0650.0000.0000.0000.000
40A67ALA00.0490.02320.9040.4230.4230.0000.0000.0000.000
41A68MET0-0.0090.01023.599-0.260-0.2600.0000.0000.0000.000
42A69CYS00.0090.03824.635-0.045-0.0450.0000.0000.0000.000
43A70SER0-0.007-0.03027.6500.0160.0160.0000.0000.0000.000
44A71THR0-0.018-0.01123.3120.1730.1730.0000.0000.0000.000
45A72PHE00.0320.01326.6030.0530.0530.0000.0000.0000.000
46A73LYS10.7500.89028.8619.5399.5390.0000.0000.0000.000
47A74GLY00.0460.03028.5580.2700.2700.0000.0000.0000.000
48A75TYR0-0.038-0.05524.1900.1900.1900.0000.0000.0000.000
49A76VAL0-0.0150.00430.3230.2660.2660.0000.0000.0000.000
50A77ALA00.0500.01933.2350.2620.2620.0000.0000.0000.000
51A78ALA00.0230.01331.3770.2200.2200.0000.0000.0000.000
52A79ARG10.9190.96233.4248.3818.3810.0000.0000.0000.000
53A80VAL00.0260.00135.5740.2470.2470.0000.0000.0000.000
54A81LEU0-0.0020.00334.9980.2270.2270.0000.0000.0000.000
55A82GLN00.0130.00333.7910.3010.3010.0000.0000.0000.000
56A83MET0-0.060-0.00438.0070.1010.1010.0000.0000.0000.000
57A84ALA00.0310.01841.1250.1860.1860.0000.0000.0000.000
58A85GLU-1-0.846-0.90937.902-8.058-8.0580.0000.0000.0000.000
59A86HIS10.7800.87239.3967.6977.6970.0000.0000.0000.000
60A87GLY00.0190.02244.3000.1200.1200.0000.0000.0000.000
61A88GLU-1-0.989-0.97743.557-6.864-6.8640.0000.0000.0000.000
62A89ILE0-0.055-0.03041.7820.0830.0830.0000.0000.0000.000
63A90SER00.024-0.01145.934-0.076-0.0760.0000.0000.0000.000
64A91LEU00.001-0.01240.463-0.058-0.0580.0000.0000.0000.000
65A92ASP-1-0.887-0.92744.602-6.468-6.4680.0000.0000.0000.000
66A93ASN00.0210.00946.9630.2130.2130.0000.0000.0000.000
67A94ARG10.8920.95647.4256.0806.0800.0000.0000.0000.000
68A95VAL00.0040.00145.7890.0440.0440.0000.0000.0000.000
69A96PHE0-0.0050.00248.774-0.034-0.0340.0000.0000.0000.000
70A97VAL0-0.029-0.02046.106-0.135-0.1350.0000.0000.0000.000
71A98ASP-1-0.869-0.94348.490-6.077-6.0770.0000.0000.0000.000
72A99ALA0-0.004-0.00748.427-0.144-0.1440.0000.0000.0000.000
73A100ASP-1-0.914-0.95449.168-6.158-6.1580.0000.0000.0000.000
74A101ALA0-0.099-0.04846.065-0.098-0.0980.0000.0000.0000.000
75A102LEU0-0.040-0.01044.505-0.200-0.2000.0000.0000.0000.000
76A103VAL00.0070.01139.4300.0180.0180.0000.0000.0000.000
77A104PRO00.0320.01739.216-0.045-0.0450.0000.0000.0000.000
78A105ASN00.0060.00434.519-0.047-0.0470.0000.0000.0000.000
79A106SER00.0250.02137.958-0.216-0.2160.0000.0000.0000.000
80A107PRO00.0070.01338.2590.1800.1800.0000.0000.0000.000
81A108VAL0-0.076-0.04439.9720.1130.1130.0000.0000.0000.000
82A109THR00.017-0.02741.8780.1960.1960.0000.0000.0000.000
83A110GLU-1-0.865-0.94842.640-7.250-7.2500.0000.0000.0000.000
84A111ALA0-0.061-0.02545.7610.1660.1660.0000.0000.0000.000
85A112ARG10.8420.91647.4716.5156.5150.0000.0000.0000.000
86A113ALA00.0510.03148.4660.0650.0650.0000.0000.0000.000
87A114GLY0-0.015-0.00149.9340.1140.1140.0000.0000.0000.000
88A115ALA0-0.050-0.02051.7350.1470.1470.0000.0000.0000.000
89A116GLU-1-0.909-0.96250.436-6.043-6.0430.0000.0000.0000.000
90A117MET0-0.081-0.02942.693-0.029-0.0290.0000.0000.0000.000
91A118THR0-0.029-0.03445.897-0.003-0.0030.0000.0000.0000.000
92A119LEU00.0480.01642.630-0.162-0.1620.0000.0000.0000.000
93A120ALA00.0360.03241.226-0.233-0.2330.0000.0000.0000.000
94A121GLU-1-0.788-0.87640.733-6.864-6.8640.0000.0000.0000.000
95A122LEU00.0040.00441.084-0.169-0.1690.0000.0000.0000.000
96A123CYS0-0.023-0.00937.050-0.269-0.2690.0000.0000.0000.000
97A124GLN0-0.047-0.03036.280-0.110-0.1100.0000.0000.0000.000
98A125ALA00.0000.00436.801-0.191-0.1910.0000.0000.0000.000
99A126ALA0-0.020-0.00935.187-0.203-0.2030.0000.0000.0000.000
100A127LEU0-0.020-0.01531.033-0.349-0.3490.0000.0000.0000.000
101A128GLN00.0260.01332.032-0.219-0.2190.0000.0000.0000.000
102A129ARG10.9770.97233.8008.0188.0180.0000.0000.0000.000
103A130SER00.0140.02531.673-0.129-0.1290.0000.0000.0000.000
104A131ASP-1-0.765-0.85733.516-7.842-7.8420.0000.0000.0000.000
105A132ASN00.0460.01335.046-0.317-0.3170.0000.0000.0000.000
106A133THR00.0250.00637.4940.0210.0210.0000.0000.0000.000
107A134ALA00.016-0.00238.8590.0870.0870.0000.0000.0000.000
108A135ALA0-0.0120.00235.3880.0080.0080.0000.0000.0000.000
109A136ASN00.0440.01037.360-0.178-0.1780.0000.0000.0000.000
110A137LEU00.0070.00339.7800.1080.1080.0000.0000.0000.000
111A138LEU00.0080.01537.6930.0950.0950.0000.0000.0000.000
112A139LEU0-0.0100.00134.8770.0200.0200.0000.0000.0000.000
113A140LYS10.9110.94038.8676.9416.9410.0000.0000.0000.000
114A141THR0-0.063-0.01741.7910.2180.2180.0000.0000.0000.000
115A142ILE0-0.014-0.01535.8940.0560.0560.0000.0000.0000.000
116A143GLY00.0100.01139.838-0.041-0.0410.0000.0000.0000.000
117A144GLY0-0.018-0.01238.726-0.060-0.0600.0000.0000.0000.000
118A145PRO00.0260.00334.393-0.136-0.1360.0000.0000.0000.000
119A146ALA00.0430.02533.932-0.279-0.2790.0000.0000.0000.000
120A147ALA00.0240.02434.984-0.176-0.1760.0000.0000.0000.000
121A148VAL00.0010.00730.289-0.146-0.1460.0000.0000.0000.000
122A149THR0-0.026-0.01030.074-0.430-0.4300.0000.0000.0000.000
123A150ALA0-0.007-0.00830.766-0.227-0.2270.0000.0000.0000.000
124A151PHE00.0020.00729.392-0.101-0.1010.0000.0000.0000.000
125A152ALA00.0380.02226.960-0.176-0.1760.0000.0000.0000.000
126A153ARG10.8090.89027.16310.84710.8470.0000.0000.0000.000
127A154SER0-0.090-0.05129.2760.0040.0040.0000.0000.0000.000
128A155VAL0-0.028-0.01126.5410.0450.0450.0000.0000.0000.000
129A156GLY00.0130.01225.414-0.368-0.3680.0000.0000.0000.000
130A157ASP-1-0.732-0.79823.261-13.328-13.3280.0000.0000.0000.000
131A158GLU-1-0.933-0.97523.115-11.886-11.8860.0000.0000.0000.000
132A159ARG10.8370.91319.75014.12714.1270.0000.0000.0000.000
133A160THR0-0.020-0.02623.5860.1370.1370.0000.0000.0000.000
134A161ARG10.8010.88025.48210.93410.9340.0000.0000.0000.000
135A162LEU00.0000.00628.606-0.200-0.2000.0000.0000.0000.000
136A163ASP-1-0.805-0.88130.930-9.797-9.7970.0000.0000.0000.000
137A164ARG10.7660.85631.21210.04110.0410.0000.0000.0000.000
138A165TRP00.015-0.00135.082-0.062-0.0620.0000.0000.0000.000
139A166GLU-1-0.755-0.87033.112-9.692-9.6920.0000.0000.0000.000
140A167VAL00.0520.02535.5090.2720.2720.0000.0000.0000.000
141A168GLU-1-0.883-0.95934.425-8.538-8.5380.0000.0000.0000.000
142A169LEU0-0.076-0.02230.562-0.269-0.2690.0000.0000.0000.000
143A170ASN0-0.037-0.05229.509-0.692-0.6920.0000.0000.0000.000
144A171SER00.0200.02029.583-0.250-0.2500.0000.0000.0000.000
145A172ALA00.002-0.00125.860-0.065-0.0650.0000.0000.0000.000
146A173ILE00.0320.03426.770-0.380-0.3800.0000.0000.0000.000
147A174PRO0-0.008-0.00924.370-0.278-0.2780.0000.0000.0000.000
148A175GLY00.0040.00924.6490.2940.2940.0000.0000.0000.000
149A176ASP-1-0.819-0.87725.764-9.997-9.9970.0000.0000.0000.000
150A177PRO00.005-0.01626.398-0.307-0.3070.0000.0000.0000.000
151A178ARG10.8020.88927.4719.5059.5050.0000.0000.0000.000
152A179ASP-1-0.709-0.84228.654-9.991-9.9910.0000.0000.0000.000
153A180THR0-0.056-0.03123.675-0.447-0.4470.0000.0000.0000.000
154A181SER00.030-0.02222.2060.1270.1270.0000.0000.0000.000
155A182THR0-0.0160.00817.195-0.412-0.4120.0000.0000.0000.000
156A183PRO00.0250.02414.2190.5340.5340.0000.0000.0000.000
157A184ALA00.0300.00614.3480.3260.3260.0000.0000.0000.000
158A185ALA0-0.066-0.02116.1250.6070.6070.0000.0000.0000.000
159A186LEU00.0650.02119.7440.5590.5590.0000.0000.0000.000
160A187ALA0-0.0210.00116.9310.4760.4760.0000.0000.0000.000
161A188VAL00.0010.00218.9260.4120.4120.0000.0000.0000.000
162A189GLY00.0630.03320.9700.5290.5290.0000.0000.0000.000
163A190TYR0-0.030-0.05321.8200.5380.5380.0000.0000.0000.000
164A191ARG10.9400.96820.74212.73312.7330.0000.0000.0000.000
165A192ALA0-0.052-0.02622.8910.3950.3950.0000.0000.0000.000
166A193ILE0-0.024-0.02226.0590.4320.4320.0000.0000.0000.000
167A194LEU00.0310.02524.6370.3280.3280.0000.0000.0000.000
168A195ALA0-0.074-0.04724.0460.1260.1260.0000.0000.0000.000
169A196GLY0-0.037-0.00726.088-0.223-0.2230.0000.0000.0000.000
170A197ASP-1-0.896-0.94227.740-9.724-9.7240.0000.0000.0000.000
171A198ALA0-0.0150.00529.6660.2440.2440.0000.0000.0000.000
172A199LEU0-0.018-0.00231.5920.2550.2550.0000.0000.0000.000
173A200SER0-0.032-0.03633.717-0.110-0.1100.0000.0000.0000.000
174A201PRO00.009-0.01633.824-0.045-0.0450.0000.0000.0000.000
175A202PRO0-0.004-0.00834.770-0.115-0.1150.0000.0000.0000.000
176A203GLN00.0510.02436.823-0.050-0.0500.0000.0000.0000.000
177A204ARG10.8890.94729.2009.8509.8500.0000.0000.0000.000
178A205GLY00.0230.01832.130-0.240-0.2400.0000.0000.0000.000
179A206LEU00.0210.01833.917-0.070-0.0700.0000.0000.0000.000
180A207LEU0-0.008-0.00130.046-0.028-0.0280.0000.0000.0000.000
181A208GLU-1-0.826-0.91428.398-10.596-10.5960.0000.0000.0000.000
182A209ASP-1-0.853-0.91830.808-8.997-8.9970.0000.0000.0000.000
183A210TRP0-0.010-0.02733.657-0.026-0.0260.0000.0000.0000.000
184A211MET0-0.032-0.00626.4160.0090.0090.0000.0000.0000.000
185A212ARG10.8020.88829.3039.6549.6540.0000.0000.0000.000
186A213ALA0-0.005-0.00130.650-0.069-0.0690.0000.0000.0000.000
187A214ASN0-0.044-0.00927.8490.2490.2490.0000.0000.0000.000
188A215GLN0-0.066-0.04331.610-0.059-0.0590.0000.0000.0000.000
189A216THR0-0.059-0.02529.311-0.051-0.0510.0000.0000.0000.000
190A217SER0-0.030-0.02924.938-0.331-0.3310.0000.0000.0000.000
191A220SER0-0.023-0.02222.6200.3200.3200.0000.0000.0000.000
192A221MET0-0.018-0.00519.862-0.169-0.1690.0000.0000.0000.000
193A222ARG10.8110.89521.53610.66010.6600.0000.0000.0000.000
194A223ALA0-0.014-0.00123.7260.1590.1590.0000.0000.0000.000
195A224GLY0-0.031-0.00519.785-0.039-0.0390.0000.0000.0000.000
196A225LEU0-0.052-0.02219.335-0.801-0.8010.0000.0000.0000.000
197A226PRO0-0.009-0.00320.3430.4560.4560.0000.0000.0000.000
198A227GLU-1-0.885-0.95023.369-9.940-9.9400.0000.0000.0000.000
199A228GLY0-0.027-0.02126.257-0.186-0.1860.0000.0000.0000.000
200A229TRP00.0010.00719.165-0.181-0.1810.0000.0000.0000.000
201A230THR0-0.026-0.01125.4880.3090.3090.0000.0000.0000.000
202A231THR0-0.017-0.03522.956-0.448-0.4480.0000.0000.0000.000
203A232ALA00.0010.01025.2580.5170.5170.0000.0000.0000.000
204A233ASP-1-0.762-0.84123.783-12.343-12.3430.0000.0000.0000.000
205A234LYS10.8150.90324.79111.07911.0790.0000.0000.0000.000
206A235THR00.0310.02524.606-0.294-0.2940.0000.0000.0000.000
207A236GLY0-0.035-0.01924.8530.5150.5150.0000.0000.0000.000
208A237SER0-0.022-0.01225.047-0.487-0.4870.0000.0000.0000.000
209A238GLY00.0340.00526.9190.4370.4370.0000.0000.0000.000
210A240ASP-1-0.861-0.91427.656-10.282-10.2820.0000.0000.0000.000
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