FMODB ID: 2K19R
Calculation Name: 1ZOQ-C-Xray310
Preferred Name: CREB-binding protein
Target Type: SINGLE PROTEIN
Ligand Name:
ligand 3-letter code:
PDB ID: 1ZOQ
Chain ID: C
ChEMBL ID: CHEMBL5747
UniProt ID: Q92793
Base Structure: X-ray
Registration Date: 2021-09-06
Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.
Modeling method
Optimization | MOE:Amber10:EHT |
---|---|
Restraint | OptH |
Protonation | MOE:Protonate 3D |
Complement | MOE:Structure Preparation |
Water | No |
Procedure | Auto-FMO protocol ver. 1.20200116 |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 47 |
LigandCharge | |
Software | ABINIT-MP - Open Ver.1 Rev. 15 / 20190524 |
Total energy (hartree)
FMO2-HF: Electronic energy | -198003.813945 |
---|---|
FMO2-HF: Nuclear repulsion | 179723.696271 |
FMO2-HF: Total energy | -18280.117674 |
FMO2-MP2: Total energy | -18333.892862 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(C:2065:SER )
Summations of interaction energy for
fragment #1(C:2065:SER )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-7.433 | -3.1 | 4.123 | -4.296 | -4.161 | -0.004 |
Interaction energy analysis for fragmet #1(C:2065:SER )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | C | 2067 | LEU | 0 | 0.021 | -0.003 | 3.139 | -2.478 | -0.427 | 0.046 | -0.926 | -1.171 | 0.004 |
4 | C | 2068 | GLN | 0 | 0.046 | 0.020 | 1.996 | -1.411 | -0.918 | 4.031 | -2.318 | -2.207 | 0.001 |
5 | C | 2069 | ASP | -1 | -0.908 | -0.944 | 3.056 | -8.634 | -6.845 | 0.046 | -1.052 | -0.783 | -0.009 |
6 | C | 2070 | LEU | 0 | -0.020 | -0.009 | 5.667 | 1.035 | 1.035 | 0.000 | 0.000 | 0.000 | 0.000 |
7 | C | 2071 | LEU | 0 | 0.013 | -0.002 | 6.427 | 0.363 | 0.363 | 0.000 | 0.000 | 0.000 | 0.000 |
8 | C | 2072 | ARG | 1 | 0.959 | 1.003 | 7.668 | 1.058 | 1.058 | 0.000 | 0.000 | 0.000 | 0.000 |
9 | C | 2073 | THR | 0 | -0.078 | -0.052 | 9.210 | 0.257 | 0.257 | 0.000 | 0.000 | 0.000 | 0.000 |
10 | C | 2074 | LEU | 0 | -0.013 | -0.007 | 11.785 | 0.149 | 0.149 | 0.000 | 0.000 | 0.000 | 0.000 |
11 | C | 2075 | LYS | 1 | 0.871 | 0.954 | 13.887 | 0.435 | 0.435 | 0.000 | 0.000 | 0.000 | 0.000 |
12 | C | 2076 | SER | 0 | 0.017 | -0.001 | 16.588 | 0.063 | 0.063 | 0.000 | 0.000 | 0.000 | 0.000 |
13 | C | 2077 | PRO | 0 | -0.001 | 0.003 | 17.105 | -0.033 | -0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
14 | C | 2078 | SER | 0 | -0.007 | 0.004 | 14.985 | 0.004 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
15 | C | 2079 | SER | 0 | 0.023 | 0.006 | 16.685 | 0.023 | 0.023 | 0.000 | 0.000 | 0.000 | 0.000 |
16 | C | 2080 | PRO | 0 | 0.056 | 0.016 | 14.648 | -0.032 | -0.032 | 0.000 | 0.000 | 0.000 | 0.000 |
17 | C | 2081 | GLN | 0 | 0.057 | 0.024 | 14.826 | -0.028 | -0.028 | 0.000 | 0.000 | 0.000 | 0.000 |
18 | C | 2082 | GLN | 0 | 0.039 | 0.020 | 16.099 | -0.021 | -0.021 | 0.000 | 0.000 | 0.000 | 0.000 |
19 | C | 2083 | GLN | 0 | 0.037 | 0.015 | 9.543 | -0.013 | -0.013 | 0.000 | 0.000 | 0.000 | 0.000 |
20 | C | 2084 | GLN | 0 | -0.001 | 0.005 | 11.659 | -0.054 | -0.054 | 0.000 | 0.000 | 0.000 | 0.000 |
21 | C | 2085 | GLN | 0 | -0.022 | -0.029 | 13.156 | 0.045 | 0.045 | 0.000 | 0.000 | 0.000 | 0.000 |
22 | C | 2086 | VAL | 0 | 0.024 | 0.025 | 11.364 | 0.025 | 0.025 | 0.000 | 0.000 | 0.000 | 0.000 |
23 | C | 2087 | LEU | 0 | 0.002 | -0.004 | 7.014 | 0.025 | 0.025 | 0.000 | 0.000 | 0.000 | 0.000 |
24 | C | 2088 | ASN | 0 | 0.019 | 0.010 | 10.739 | 0.102 | 0.102 | 0.000 | 0.000 | 0.000 | 0.000 |
25 | C | 2089 | ILE | 0 | 0.004 | 0.016 | 13.988 | 0.035 | 0.035 | 0.000 | 0.000 | 0.000 | 0.000 |
26 | C | 2090 | LEU | 0 | 0.000 | -0.009 | 9.549 | 0.018 | 0.018 | 0.000 | 0.000 | 0.000 | 0.000 |
27 | C | 2091 | LYS | 1 | 0.932 | 0.971 | 11.690 | -0.105 | -0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
28 | C | 2092 | SER | 0 | -0.048 | -0.031 | 12.840 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
29 | C | 2093 | ASN | 0 | -0.030 | -0.005 | 15.348 | -0.007 | -0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
30 | C | 2094 | PRO | 0 | 0.072 | 0.047 | 14.065 | -0.026 | -0.026 | 0.000 | 0.000 | 0.000 | 0.000 |
31 | C | 2095 | GLN | 0 | 0.078 | 0.024 | 14.974 | 0.005 | 0.005 | 0.000 | 0.000 | 0.000 | 0.000 |
32 | C | 2096 | LEU | 0 | -0.020 | -0.017 | 14.909 | -0.027 | -0.027 | 0.000 | 0.000 | 0.000 | 0.000 |
33 | C | 2097 | MET | 0 | 0.001 | 0.004 | 8.456 | -0.029 | -0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
34 | C | 2098 | ALA | 0 | 0.010 | 0.006 | 12.253 | -0.071 | -0.071 | 0.000 | 0.000 | 0.000 | 0.000 |
35 | C | 2099 | ALA | 0 | 0.009 | 0.010 | 14.507 | -0.036 | -0.036 | 0.000 | 0.000 | 0.000 | 0.000 |
36 | C | 2100 | PHE | 0 | 0.013 | 0.004 | 11.707 | -0.040 | -0.040 | 0.000 | 0.000 | 0.000 | 0.000 |
37 | C | 2101 | ILE | 0 | -0.027 | -0.011 | 9.062 | -0.132 | -0.132 | 0.000 | 0.000 | 0.000 | 0.000 |
38 | C | 2102 | LYS | 1 | 0.968 | 0.986 | 11.561 | 0.126 | 0.126 | 0.000 | 0.000 | 0.000 | 0.000 |
39 | C | 2103 | GLN | 0 | -0.019 | -0.029 | 14.817 | -0.047 | -0.047 | 0.000 | 0.000 | 0.000 | 0.000 |
40 | C | 2104 | ARG | 1 | 0.908 | 0.960 | 6.206 | 1.737 | 1.737 | 0.000 | 0.000 | 0.000 | 0.000 |
41 | C | 2105 | THR | 0 | -0.010 | -0.009 | 12.102 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
42 | C | 2106 | ALA | 0 | -0.018 | 0.008 | 14.699 | 0.052 | 0.052 | 0.000 | 0.000 | 0.000 | 0.000 |
43 | C | 2107 | LYS | 1 | 0.912 | 0.950 | 17.705 | 0.241 | 0.241 | 0.000 | 0.000 | 0.000 | 0.000 |
44 | C | 2108 | TYR | 0 | 0.016 | 0.020 | 19.198 | -0.002 | -0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
45 | C | 2109 | VAL | 0 | -0.010 | -0.010 | 21.926 | -0.002 | -0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
46 | C | 2110 | ALA | 0 | -0.037 | -0.012 | 25.268 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
47 | C | 2111 | ASN | -1 | -0.912 | -0.946 | 28.094 | -0.051 | -0.051 | 0.000 | 0.000 | 0.000 | 0.000 |