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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2026-10-16

All entries: 100345

Number of unique PDB entries: 32071

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  • 2026.11.13 Maintenance

    The database will be unavailable from 17:00 on Friday, November 13 to 17:00 on Monday, November 16, 2026 (JST) due to scheduled maintenance. We apologize for any inconvenience and appreciate your understanding.

    2024.10.28 Web API

    The FMODB RESTful API, which was developed as a beta version, was officially released on October 28, 2024. here.

    2024.6.24 PDBj collab

    We have started collaboration with the (Protein Data Bank Japan) database through mutual links. here.

    2020.4.17 COVID-19

    FMO data for COVID-19 related proteins have been released on Apr 17, 2020. here.

Category

Base Structure

Experimental
All Entries 66581 Kinase: p38 189 Kinase: Aurora 47 Kinase: CHK1 195 Nuclear receptor: ERa 65 Nuclear receptor: ERb 83 GPCR 146 CDK2 - ApoStructure 65297
All Entries 104 TrpCage 76 HIV-1 Protease 27
Electron Microscopy All Entries 3499
Computational
All Entries 13819 TrpCage 991 polyQ 10000
Docking All Entries 11552
Predicted Structure
AlphaFold 1566
Other
Others All Entries 4790

Structure Class

All Entries 1419 Papain like protease 146 Main protease 916 ADP ribose phosphatase 22 RNA dependent RNA polymerase 27 Endoribonuclease 21 2'-O-ribose methyltransferase 9 Spike protein 160 Nucleocapsid protein 21 Helicase 63 Other SARS-CoV-2 34
Protein type
Globular proteins 48022 Membrane proteins 1615 Fibrous proteins 1276 Non-globular/Intrinsically unstructured proteins 1558
Protein class
All alpha proteins 14056 All beta proteins 13051 Alpha and beta proteins (a/b) 15464 Alpha and beta proteins (a+b) 17367 Small proteins 3801
AlphaFoldDB 1566

Search Sample

Keyword Search: COVID-19

PDB ID Search: 1ERE

Extended PDB ID Search: pdb_00001ere

FMODB ID Search: 5P4NP

UniProt ID Search: P03372

Keyword Search(Target): Estrogen receptor alpha

Keyword Search(Ligand): NHI

Blast Search: Sequence of 3RIN / E-Value Cutoff E-148

Data license

All calculated data by the FMO Drug Design (FMODD) Consortium are licensed under CC BY-SA 4.0.

Citing Us CC BY-SA 4.0 FMODD Consortium

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