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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 4N4QN

Calculation Name: 1EQ6-A-Xray309

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1EQ6

Chain ID: A

ChEMBL ID:

UniProt ID: P47123

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200116
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 189
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2053778.339201
FMO2-HF: Nuclear repulsion 1979883.635012
FMO2-HF: Total energy -73894.704189
FMO2-MP2: Total energy -74111.920515


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:30:SER )


Summations of interaction energy for fragment #1(A:30:SER )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-14.15-8.9050.486-2.786-2.948-0.01
Interaction energy analysis for fragmet #1(A:30:SER )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.008 / q_NPA : -0.009
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A32ASN 0-0.058-0.0403.423-1.5641.3660.016-1.570-1.3760.004
4A33ASN 0-0.001-0.0286.1070.2840.2840.0000.0000.0000.000
5A34LYS 10.9230.9589.1021.2521.2520.0000.0000.0000.000
6A35GLU -1-0.933-0.96912.356-0.419-0.4190.0000.0000.0000.000
7A36VAL 0-0.048-0.01415.173-0.022-0.0220.0000.0000.0000.000
8A37GLU -1-0.929-0.97518.297-0.273-0.2730.0000.0000.0000.000
9A38LEU 0-0.035-0.02620.356-0.012-0.0120.0000.0000.0000.000
10A39TYR 0-0.001-0.05223.5360.0150.0150.0000.0000.0000.000
11A40GLY 0-0.023-0.01327.3070.0160.0160.0000.0000.0000.000
12A41GLY 00.0300.02324.9530.0040.0040.0000.0000.0000.000
13A42ALA 0-0.043-0.00625.8690.0070.0070.0000.0000.0000.000
14A43ILE 0-0.008-0.00121.8230.0200.0200.0000.0000.0000.000
15A44THR 00.0270.03618.931-0.017-0.0170.0000.0000.0000.000
16A45THR 00.007-0.00516.3000.0190.0190.0000.0000.0000.000
17A46VAL 0-0.053-0.01711.011-0.053-0.0530.0000.0000.0000.000
18A47VAL 00.0280.02113.3960.0670.0670.0000.0000.0000.000
19A48PRO 00.0440.0219.908-0.129-0.1290.0000.0000.0000.000
20A49PRO 0-0.031-0.0089.5280.2950.2950.0000.0000.0000.000
21A50GLY 00.0560.01212.624-0.075-0.0750.0000.0000.0000.000
22A51PHE 0-0.0080.01812.5120.1030.1030.0000.0000.0000.000
23A52ILE 0-0.033-0.01616.5670.0130.0130.0000.0000.0000.000
24A53ASP -1-0.757-0.83120.290-0.345-0.3450.0000.0000.0000.000
25A54ALA 0-0.014-0.03022.5890.0190.0190.0000.0000.0000.000
26A55SER 00.026-0.01325.0760.0310.0310.0000.0000.0000.000
27A56THR 0-0.089-0.04625.3090.0190.0190.0000.0000.0000.000
28A57LEU 0-0.098-0.05725.9330.0180.0180.0000.0000.0000.000
29A58ARG 10.8120.88829.3370.2600.2600.0000.0000.0000.000
30A59GLU -1-0.898-0.93230.135-0.165-0.1650.0000.0000.0000.000
31A60VAL 0-0.037-0.01127.251-0.002-0.0020.0000.0000.0000.000
32A61PRO 00.002-0.00929.5700.0070.0070.0000.0000.0000.000
33A62ASP -1-0.868-0.93630.544-0.146-0.1460.0000.0000.0000.000
34A63THR 0-0.048-0.01830.227-0.007-0.0070.0000.0000.0000.000
35A64GLN 0-0.094-0.04226.640-0.015-0.0150.0000.0000.0000.000
36A65GLU -1-0.790-0.85823.112-0.294-0.2940.0000.0000.0000.000
37A66VAL 0-0.019-0.01822.569-0.003-0.0030.0000.0000.0000.000
38A67TYR 00.0340.01818.354-0.043-0.0430.0000.0000.0000.000
39A68VAL 0-0.023-0.01819.2210.0110.0110.0000.0000.0000.000
40A69ASN 0-0.063-0.02113.362-0.056-0.0560.0000.0000.0000.000
41A70SER 0-0.060-0.04816.9010.0840.0840.0000.0000.0000.000
42A71ARG 10.7770.8728.9461.9171.9170.0000.0000.0000.000
43A72ARG 10.7940.85716.4320.6140.6140.0000.0000.0000.000
44A73ASP -1-0.885-0.95416.279-0.540-0.5400.0000.0000.0000.000
45A74GLU -1-0.945-0.95416.088-0.509-0.5090.0000.0000.0000.000
46A75GLU -1-0.909-0.92713.846-0.952-0.9520.0000.0000.0000.000
47A76GLU -1-0.932-0.96410.662-0.802-0.8020.0000.0000.0000.000
48A77PHE 0-0.047-0.0327.523-0.083-0.0830.0000.0000.0000.000
49A78GLU -1-0.881-0.9433.306-2.793-2.3150.031-0.117-0.3930.000
50A79ASP -1-0.911-0.9382.598-10.767-9.0870.439-1.089-1.031-0.014
51A80GLY 00.0050.0024.9920.7700.8430.000-0.002-0.0710.000
52A81LEU 0-0.061-0.0356.4850.6400.6400.0000.0000.0000.000
53A82ALA 0-0.016-0.0179.582-0.035-0.0350.0000.0000.0000.000
54A83THR 00.003-0.00712.753-0.109-0.1090.0000.0000.0000.000
55A84ASN 0-0.0020.00415.6840.0090.0090.0000.0000.0000.000
56A85GLU -1-0.738-0.85112.946-0.744-0.7440.0000.0000.0000.000
57A86SER 0-0.021-0.01216.708-0.015-0.0150.0000.0000.0000.000
58A87ILE 0-0.015-0.01314.4210.0240.0240.0000.0000.0000.000
59A88ILE 00.0250.02018.732-0.008-0.0080.0000.0000.0000.000
60A89VAL 0-0.035-0.01320.1950.0170.0170.0000.0000.0000.000
61A90ASP -1-0.766-0.89622.641-0.141-0.1410.0000.0000.0000.000
62A91LEU 0-0.055-0.01326.2070.0170.0170.0000.0000.0000.000
63A92LEU 0-0.007-0.00628.4550.0050.0050.0000.0000.0000.000
64A93GLU -1-0.863-0.92930.855-0.046-0.0460.0000.0000.0000.000
65A94THR 0-0.068-0.03232.2030.0050.0050.0000.0000.0000.000
66A95VAL 0-0.0130.00531.5890.0020.0020.0000.0000.0000.000
67A96ASP -1-0.903-0.94034.0850.0000.0000.0000.0000.0000.000
68A97LYS 10.8610.92533.137-0.026-0.0260.0000.0000.0000.000
69A98SER 00.003-0.00833.4180.0000.0000.0000.0000.0000.000
70A99ASP -1-0.865-0.92830.8250.1000.1000.0000.0000.0000.000
71A100LEU 0-0.022-0.00224.175-0.007-0.0070.0000.0000.0000.000
72A101LYS 10.8810.94026.490-0.160-0.1600.0000.0000.0000.000
73A102GLU -1-0.939-0.98427.6550.0520.0520.0000.0000.0000.000
74A103ALA 0-0.0140.00029.149-0.011-0.0110.0000.0000.0000.000
75A104TRP 0-0.023-0.03321.463-0.003-0.0030.0000.0000.0000.000
76A105GLN 0-0.027-0.03026.641-0.012-0.0120.0000.0000.0000.000
77A106PHE 00.0030.01228.372-0.005-0.0050.0000.0000.0000.000
78A107HIS 10.9060.92027.0310.0210.0210.0000.0000.0000.000
79A108VAL 0-0.019-0.00124.065-0.014-0.0140.0000.0000.0000.000
80A109GLU -1-0.884-0.94226.711-0.001-0.0010.0000.0000.0000.000
81A110ASP -1-0.855-0.91930.151-0.042-0.0420.0000.0000.0000.000
82A111LEU 0-0.065-0.02723.965-0.013-0.0130.0000.0000.0000.000
83A112THR 0-0.029-0.04026.467-0.004-0.0040.0000.0000.0000.000
84A113GLU -1-0.945-0.97328.743-0.019-0.0190.0000.0000.0000.000
85A114LEU 0-0.058-0.00929.231-0.002-0.0020.0000.0000.0000.000
86A115ASN 0-0.061-0.02527.022-0.016-0.0160.0000.0000.0000.000
87A116GLY 0-0.055-0.03031.2130.0040.0040.0000.0000.0000.000
88A117THR 0-0.027-0.03829.2190.0070.0070.0000.0000.0000.000
89A118THR 0-0.049-0.02932.1380.0020.0020.0000.0000.0000.000
90A119LYS 10.9380.96931.540-0.064-0.0640.0000.0000.0000.000
91A120TRP 00.0130.00025.2460.0040.0040.0000.0000.0000.000
92A121GLU -1-0.974-0.98524.4600.1570.1570.0000.0000.0000.000
93A122ALA 00.011-0.00322.417-0.014-0.0140.0000.0000.0000.000
94A123LEU 0-0.038-0.02018.9650.0230.0230.0000.0000.0000.000
95A124GLN 0-0.018-0.01214.2810.0460.0460.0000.0000.0000.000
96A125GLU -1-0.847-0.92418.8540.1240.1240.0000.0000.0000.000
97A126ASP -1-0.838-0.88116.8600.5110.5110.0000.0000.0000.000
98A127THR 0-0.0200.00319.733-0.053-0.0530.0000.0000.0000.000
99A128VAL 0-0.043-0.02017.0830.0350.0350.0000.0000.0000.000
100A129GLN 0-0.032-0.03519.517-0.004-0.0040.0000.0000.0000.000
101A130GLN 00.014-0.01022.672-0.030-0.0300.0000.0000.0000.000
102A131GLY 00.0040.00426.182-0.013-0.0130.0000.0000.0000.000
103A132THR 00.0030.00625.078-0.007-0.0070.0000.0000.0000.000
104A133LYS 10.9591.00519.204-0.026-0.0260.0000.0000.0000.000
105A134PHE 00.0190.00721.1960.0420.0420.0000.0000.0000.000
106A135THR 00.010-0.00416.403-0.032-0.0320.0000.0000.0000.000
107A136GLY 00.0430.01018.2650.0450.0450.0000.0000.0000.000
108A137LEU 0-0.060-0.01014.116-0.058-0.0580.0000.0000.0000.000
109A138VAL 00.0170.00718.3900.0340.0340.0000.0000.0000.000
110A139MET 00.0100.01121.591-0.029-0.0290.0000.0000.0000.000
111A140GLU -1-0.785-0.85723.820-0.006-0.0060.0000.0000.0000.000
112A141VAL 0-0.030-0.01627.2940.0070.0070.0000.0000.0000.000
113A142ALA 0-0.060-0.03829.5910.0010.0010.0000.0000.0000.000
114A143ASN 00.0590.02332.150-0.003-0.0030.0000.0000.0000.000
115A144LYS 10.9530.96634.5160.0300.0300.0000.0000.0000.000
116A145TRP 0-0.054-0.01933.9630.0020.0020.0000.0000.0000.000
117A146GLY 0-0.036-0.00837.6790.0010.0010.0000.0000.0000.000
118A147LYS 10.8370.91435.4790.0040.0040.0000.0000.0000.000
119A148PRO 00.0400.03831.262-0.009-0.0090.0000.0000.0000.000
120A149ASP -1-0.854-0.91529.3930.0240.0240.0000.0000.0000.000
121A150LEU 0-0.096-0.05931.004-0.003-0.0030.0000.0000.0000.000
122A151ALA 0-0.041-0.02629.597-0.009-0.0090.0000.0000.0000.000
123A152GLN 0-0.049-0.03621.9080.0090.0090.0000.0000.0000.000
124A153THR 00.0500.03522.6370.0000.0000.0000.0000.0000.000
125A154VAL 00.001-0.00121.513-0.026-0.0260.0000.0000.0000.000
126A155VAL 0-0.0140.00217.6410.0300.0300.0000.0000.0000.000
127A156ILE 00.016-0.00319.271-0.047-0.0470.0000.0000.0000.000
128A157GLY 0-0.0090.00516.4830.0560.0560.0000.0000.0000.000
129A158VAL 00.0340.01017.511-0.047-0.0470.0000.0000.0000.000
130A159ALA 0-0.024-0.01717.9060.0520.0520.0000.0000.0000.000
131A160LEU 0-0.0180.02419.978-0.024-0.0240.0000.0000.0000.000
132A161ILE 0-0.037-0.03119.5420.0310.0310.0000.0000.0000.000
133A162ARG 10.7880.86623.577-0.024-0.0240.0000.0000.0000.000
134A163LEU 0-0.030-0.00725.0490.0080.0080.0000.0000.0000.000
135A164THR 00.016-0.01728.644-0.004-0.0040.0000.0000.0000.000
136A165GLN 0-0.078-0.03231.737-0.005-0.0050.0000.0000.0000.000
137A166PHE 00.009-0.00930.723-0.001-0.0010.0000.0000.0000.000
138A167ASP -1-0.880-0.91433.374-0.039-0.0390.0000.0000.0000.000
139A168THR 0-0.0110.00328.754-0.008-0.0080.0000.0000.0000.000
140A169ASP -1-0.758-0.85828.194-0.007-0.0070.0000.0000.0000.000
141A170VAL 0-0.011-0.00522.999-0.012-0.0120.0000.0000.0000.000
142A171VAL 00.007-0.00623.5670.0210.0210.0000.0000.0000.000
143A172ILE 0-0.011-0.00317.537-0.026-0.0260.0000.0000.0000.000
144A173SER 0-0.010-0.00519.8510.0370.0370.0000.0000.0000.000
145A174ILE 00.003-0.00613.911-0.053-0.0530.0000.0000.0000.000
146A175ASN 0-0.015-0.00617.7490.0790.0790.0000.0000.0000.000
147A176VAL 00.0260.00015.124-0.077-0.0770.0000.0000.0000.000
148A177PRO 0-0.0070.00417.7560.0620.0620.0000.0000.0000.000
149A178LEU 0-0.0080.00017.429-0.033-0.0330.0000.0000.0000.000
150A179THR 00.0310.03017.6220.0090.0090.0000.0000.0000.000
151A180LYS 10.9690.96720.2260.0440.0440.0000.0000.0000.000
152A181GLU -1-0.891-0.96118.946-0.052-0.0520.0000.0000.0000.000
153A182GLU -1-0.713-0.80514.743-0.143-0.1430.0000.0000.0000.000
154A183ALA 00.0400.01918.7330.0340.0340.0000.0000.0000.000
155A184SER 0-0.133-0.08621.7960.0270.0270.0000.0000.0000.000
156A185GLN 00.003-0.01115.891-0.035-0.0350.0000.0000.0000.000
157A186ALA 00.0610.03720.7370.0260.0260.0000.0000.0000.000
158A187SER 0-0.015-0.00321.6000.0160.0160.0000.0000.0000.000
159A188ASN 0-0.107-0.04723.428-0.008-0.0080.0000.0000.0000.000
160A189LYS 10.9000.93823.346-0.167-0.1670.0000.0000.0000.000
161A190GLU -1-0.917-0.94318.7650.3500.3500.0000.0000.0000.000
162A191LEU 00.0170.00213.837-0.055-0.0550.0000.0000.0000.000
163A192PRO 0-0.0060.00114.9500.0820.0820.0000.0000.0000.000
164A193ALA 00.0560.0159.6150.0240.0240.0000.0000.0000.000
165A194ARG 10.7900.8719.8010.4570.4570.0000.0000.0000.000
166A195CYS 0-0.014-0.00210.895-0.115-0.1150.0000.0000.0000.000
167A196HIS 0-0.0120.0017.725-0.271-0.2710.0000.0000.0000.000
168A197ALA 0-0.007-0.0087.0870.1770.1770.0000.0000.0000.000
169A198VAL 00.0480.0157.990-0.200-0.2000.0000.0000.0000.000
170A199TYR 0-0.021-0.02410.952-0.071-0.0710.0000.0000.0000.000
171A200GLN 0-0.022-0.0134.0110.5530.6370.000-0.008-0.0770.000
172A201LEU 00.0270.0138.620-0.088-0.0880.0000.0000.0000.000
173A202LEU 0-0.0100.0059.5520.0360.0360.0000.0000.0000.000
174A203GLN 0-0.031-0.02611.2960.1360.1360.0000.0000.0000.000
175A204GLU -1-0.861-0.8977.756-1.062-1.0620.0000.0000.0000.000
176A205MET 0-0.0030.00711.310-0.024-0.0240.0000.0000.0000.000
177A206VAL 00.0320.01614.2530.0310.0310.0000.0000.0000.000
178A207ARG 10.8380.9219.746-0.300-0.3000.0000.0000.0000.000
179A208LYS 10.8190.8759.4650.7040.7040.0000.0000.0000.000
180A209PHE 00.0410.04415.337-0.037-0.0370.0000.0000.0000.000
181A210HIS 0-0.080-0.04218.3280.0400.0400.0000.0000.0000.000
182A211VAL 00.0430.02321.405-0.019-0.0190.0000.0000.0000.000
183A212VAL 0-0.067-0.03123.5040.0150.0150.0000.0000.0000.000
184A213ASP -1-0.866-0.92325.979-0.120-0.1200.0000.0000.0000.000
185A214THR 0-0.027-0.02629.501-0.002-0.0020.0000.0000.0000.000
186A215SER 0-0.112-0.05531.3470.0070.0070.0000.0000.0000.000
187A216LEU 0-0.011-0.00228.421-0.001-0.0010.0000.0000.0000.000
188A217PHE 0-0.074-0.04927.9960.0000.0000.0000.0000.0000.000
189A218ALA -1-0.928-0.95333.877-0.061-0.0610.0000.0000.0000.000