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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 82Q1Y

Calculation Name: 4UQF-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4UQF

Chain ID: A

ChEMBL ID:

UniProt ID: Q8Y5X1

Base Structure: X-ray

Registration Date: 2023-03-14

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 185
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1896631.416165
FMO2-HF: Nuclear repulsion 1822016.218517
FMO2-HF: Total energy -74615.197648
FMO2-MP2: Total energy -74828.252328


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:3:GLN)


Summations of interaction energy for fragment #1(A:3:GLN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-5.694-1.9430.078-1.436-2.3930.002
Interaction energy analysis for fragmet #1(A:3:GLN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.026 / q_NPA : -0.017
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A5ASP-1-0.866-0.9383.144-1.2741.2520.055-1.123-1.4580.000
4A6LYS10.8910.9223.789-11.564-11.1470.004-0.101-0.3190.001
5A7GLN00.0430.0297.107-0.118-0.1180.0000.0000.0000.000
6A8LYS11.0051.0148.7630.1220.1220.0000.0000.0000.000
7A9ILE0-0.030-0.0118.422-0.005-0.0050.0000.0000.0000.000
8A10ALA0-0.004-0.01211.102-0.078-0.0780.0000.0000.0000.000
9A11ASP-1-0.881-0.94013.0890.3140.3140.0000.0000.0000.000
10A12ALA0-0.017-0.01614.428-0.059-0.0590.0000.0000.0000.000
11A13VAL0-0.034-0.01715.196-0.031-0.0310.0000.0000.0000.000
12A14LYS10.9910.99417.234-0.383-0.3830.0000.0000.0000.000
13A15VAL00.0310.02119.015-0.040-0.0400.0000.0000.0000.000
14A16ILE0-0.043-0.01618.737-0.026-0.0260.0000.0000.0000.000
15A17LEU0-0.019-0.02220.585-0.019-0.0190.0000.0000.0000.000
16A18GLU-1-0.905-0.95823.4230.2380.2380.0000.0000.0000.000
17A19ALA0-0.046-0.01724.784-0.023-0.0230.0000.0000.0000.000
18A20VAL0-0.097-0.04325.624-0.016-0.0160.0000.0000.0000.000
19A21GLY0-0.0150.00228.009-0.010-0.0100.0000.0000.0000.000
20A22GLU-1-0.828-0.90026.0100.3160.3160.0000.0000.0000.000
21A23ASN00.022-0.00327.834-0.003-0.0030.0000.0000.0000.000
22A24PRO0-0.018-0.02522.6520.0200.0200.0000.0000.0000.000
23A25ASP-1-0.898-0.94223.2070.3220.3220.0000.0000.0000.000
24A26ARG10.7800.89525.427-0.351-0.3510.0000.0000.0000.000
25A27GLU-1-0.866-0.94625.0110.3320.3320.0000.0000.0000.000
26A28GLY0-0.064-0.03224.0010.0330.0330.0000.0000.0000.000
27A29LEU0-0.101-0.06022.0140.0500.0500.0000.0000.0000.000
28A30ILE00.0700.06120.0150.0590.0590.0000.0000.0000.000
29A31ASP-1-0.879-0.94317.0030.7200.7200.0000.0000.0000.000
30A32THR0-0.103-0.05516.2700.1460.1460.0000.0000.0000.000
31A33PRO00.0380.03215.6420.1310.1310.0000.0000.0000.000
32A34MET00.0420.01410.2370.3530.3530.0000.0000.0000.000
33A35ARG10.8810.93711.552-0.421-0.4210.0000.0000.0000.000
34A36VAL00.0300.01813.2450.1420.1420.0000.0000.0000.000
35A37ALA00.0040.0079.2920.1380.1380.0000.0000.0000.000
36A38ARG10.9430.9608.211-1.424-1.4240.0000.0000.0000.000
37A39MET00.0310.0339.5720.1040.1040.0000.0000.0000.000
38A40TYR0-0.008-0.01810.744-0.023-0.0230.0000.0000.0000.000
39A41GLU-1-0.910-0.9593.71811.57112.0730.017-0.119-0.4010.000
40A42GLU-1-0.955-0.9657.8081.6141.6140.0000.0000.0000.000
41A43VAL0-0.031-0.03410.291-0.203-0.2030.0000.0000.0000.000
42A44PHE0-0.014-0.01910.010-0.276-0.2760.0000.0000.0000.000
43A45ALA00.0460.0247.9520.1300.1300.0000.0000.0000.000
44A46GLY00.0310.0088.6840.0920.0920.0000.0000.0000.000
45A47LEU0-0.099-0.0438.790-0.234-0.2340.0000.0000.0000.000
46A48LYS10.8870.9424.164-3.866-3.5600.002-0.093-0.2150.001
47A49LYS10.9380.9797.730-1.538-1.5380.0000.0000.0000.000
48A50ASP-1-0.801-0.87310.5650.2090.2090.0000.0000.0000.000
49A51PRO0-0.007-0.01314.026-0.023-0.0230.0000.0000.0000.000
50A52SER0-0.039-0.04416.299-0.044-0.0440.0000.0000.0000.000
51A53VAL00.0590.02814.657-0.034-0.0340.0000.0000.0000.000
52A54HIS0-0.079-0.05415.563-0.102-0.1020.0000.0000.0000.000
53A55PHE0-0.047-0.04319.377-0.010-0.0100.0000.0000.0000.000
54A56ASP-1-0.838-0.88319.8650.0050.0050.0000.0000.0000.000
55A57THR0-0.067-0.04821.852-0.016-0.0160.0000.0000.0000.000
56A58ILE0-0.0320.00424.1580.0010.0010.0000.0000.0000.000
57A59PHE0-0.051-0.03326.3670.0120.0120.0000.0000.0000.000
58A60GLU-1-0.944-0.98129.2830.0750.0750.0000.0000.0000.000
59A61GLU-1-0.960-0.97232.1650.0370.0370.0000.0000.0000.000
60A62GLN0-0.060-0.03235.8520.0060.0060.0000.0000.0000.000
61A63HIS00.0520.02837.198-0.003-0.0030.0000.0000.0000.000
62A64GLU-1-0.945-0.98838.2430.0420.0420.0000.0000.0000.000
63A65GLU-1-0.948-0.95840.3140.0640.0640.0000.0000.0000.000
64A66LEU0-0.049-0.03238.0880.0050.0050.0000.0000.0000.000
65A67VAL00.0120.01733.4440.0010.0010.0000.0000.0000.000
66A68LEU0-0.031-0.02633.8350.0050.0050.0000.0000.0000.000
67A69VAL0-0.029-0.00429.004-0.001-0.0010.0000.0000.0000.000
68A70LYS10.8570.92631.328-0.157-0.1570.0000.0000.0000.000
69A71ASP-1-0.880-0.95231.0360.2200.2200.0000.0000.0000.000
70A72ILE00.0060.01424.9260.0090.0090.0000.0000.0000.000
71A73ARG10.9240.95524.958-0.313-0.3130.0000.0000.0000.000
72A74PHE00.0340.03121.9780.0200.0200.0000.0000.0000.000
73A75SER0-0.032-0.03119.9760.0050.0050.0000.0000.0000.000
74A76SER0-0.003-0.01718.4240.0370.0370.0000.0000.0000.000
75A77MET00.0010.01116.330-0.022-0.0220.0000.0000.0000.000
76A78CYS0-0.102-0.00919.370-0.031-0.0310.0000.0000.0000.000
77A79GLU-1-0.759-0.89319.6830.4380.4380.0000.0000.0000.000
78A80HIS0-0.026-0.01620.642-0.002-0.0020.0000.0000.0000.000
79A81HIS0-0.022-0.04623.034-0.037-0.0370.0000.0000.0000.000
80A82LEU0-0.0010.01317.0050.0230.0230.0000.0000.0000.000
81A83VAL00.0110.00319.8790.0360.0360.0000.0000.0000.000
82A84PRO00.0440.00520.231-0.014-0.0140.0000.0000.0000.000
83A85PHE0-0.042-0.00821.893-0.052-0.0520.0000.0000.0000.000
84A86PHE00.014-0.00622.9030.0490.0490.0000.0000.0000.000
85A87GLY00.0210.01325.029-0.034-0.0340.0000.0000.0000.000
86A88VAL0-0.036-0.00326.7720.0210.0210.0000.0000.0000.000
87A89ALA0-0.006-0.00526.403-0.006-0.0060.0000.0000.0000.000
88A90HIS00.0470.01828.430-0.005-0.0050.0000.0000.0000.000
89A91VAL0-0.018-0.00627.273-0.002-0.0020.0000.0000.0000.000
90A92ALA00.0400.01530.699-0.007-0.0070.0000.0000.0000.000
91A93TYR0-0.030-0.03331.074-0.001-0.0010.0000.0000.0000.000
92A94LEU00.0900.05634.431-0.002-0.0020.0000.0000.0000.000
93A95PRO00.0200.03034.918-0.002-0.0020.0000.0000.0000.000
94A96GLN0-0.015-0.01635.463-0.009-0.0090.0000.0000.0000.000
95A97ASN0-0.073-0.05836.017-0.003-0.0030.0000.0000.0000.000
96A98GLY00.0550.04137.084-0.005-0.0050.0000.0000.0000.000
97A99ARG10.8530.92731.338-0.041-0.0410.0000.0000.0000.000
98A100VAL00.0590.02931.8230.0100.0100.0000.0000.0000.000
99A101ALA00.0070.00527.180-0.005-0.0050.0000.0000.0000.000
100A102GLY00.0880.03726.9270.0020.0020.0000.0000.0000.000
101A103LEU00.0220.00026.2920.0190.0190.0000.0000.0000.000
102A104SER0-0.017-0.02623.4280.0210.0210.0000.0000.0000.000
103A105LYS10.9540.99121.701-0.070-0.0700.0000.0000.0000.000
104A106LEU00.0630.03021.8500.0260.0260.0000.0000.0000.000
105A107ALA0-0.008-0.00722.9010.0260.0260.0000.0000.0000.000
106A108ARG10.9640.99017.279-0.310-0.3100.0000.0000.0000.000
107A109VAL00.0250.03017.9830.0660.0660.0000.0000.0000.000
108A110VAL0-0.008-0.00319.2820.0380.0380.0000.0000.0000.000
109A111ASP-1-0.906-0.95517.0390.6160.6160.0000.0000.0000.000
110A112ASP-1-0.884-0.93814.4180.7970.7970.0000.0000.0000.000
111A113VAL0-0.060-0.02915.0880.0880.0880.0000.0000.0000.000
112A114SER00.0070.00617.4200.0030.0030.0000.0000.0000.000
113A115ARG10.8850.99512.746-0.940-0.9400.0000.0000.0000.000
114A116ARG10.9240.94512.752-0.538-0.5380.0000.0000.0000.000
115A117PRO0-0.0030.01513.730-0.085-0.0850.0000.0000.0000.000
116A118GLN00.012-0.01316.965-0.095-0.0950.0000.0000.0000.000
117A119LEU00.0070.01720.058-0.016-0.0160.0000.0000.0000.000
118A120GLN00.0440.00723.5350.0240.0240.0000.0000.0000.000
119A121GLU-1-0.842-0.93325.5520.2670.2670.0000.0000.0000.000
120A122ARG10.8150.89720.232-0.396-0.3960.0000.0000.0000.000
121A123ILE00.0120.02120.712-0.007-0.0070.0000.0000.0000.000
122A124THR00.0170.01823.005-0.017-0.0170.0000.0000.0000.000
123A125THR0-0.033-0.02826.551-0.014-0.0140.0000.0000.0000.000
124A126THR00.0000.00220.190-0.017-0.0170.0000.0000.0000.000
125A127VAL00.0230.01422.616-0.012-0.0120.0000.0000.0000.000
126A128ALA0-0.002-0.00824.268-0.021-0.0210.0000.0000.0000.000
127A129GLU-1-0.792-0.87324.9870.1230.1230.0000.0000.0000.000
128A130ILE00.0330.02120.015-0.017-0.0170.0000.0000.0000.000
129A131MET0-0.018-0.00224.151-0.016-0.0160.0000.0000.0000.000
130A132MET0-0.037-0.01826.974-0.018-0.0180.0000.0000.0000.000
131A133GLU-1-0.953-0.97823.9690.1150.1150.0000.0000.0000.000
132A134LYS10.7740.85721.902-0.072-0.0720.0000.0000.0000.000
133A135LEU00.0120.00826.257-0.010-0.0100.0000.0000.0000.000
134A136LYS10.9461.00029.260-0.045-0.0450.0000.0000.0000.000
135A137PRO00.0050.03230.972-0.009-0.0090.0000.0000.0000.000
136A138LEU00.0260.00434.092-0.002-0.0020.0000.0000.0000.000
137A139GLY00.002-0.01135.359-0.002-0.0020.0000.0000.0000.000
138A140VAL0-0.020-0.00529.9140.0010.0010.0000.0000.0000.000
139A141MET0-0.019-0.00533.331-0.006-0.0060.0000.0000.0000.000
140A142VAL00.0110.01527.5890.0050.0050.0000.0000.0000.000
141A143ILE00.000-0.00730.962-0.006-0.0060.0000.0000.0000.000
142A144MET0-0.037-0.00624.1810.0100.0100.0000.0000.0000.000
143A145GLU-1-0.870-0.93129.7340.2060.2060.0000.0000.0000.000
144A146ALA0-0.033-0.02327.1790.0200.0200.0000.0000.0000.000
145A147GLU-1-0.846-0.91628.6090.2700.2700.0000.0000.0000.000
146A148HIS0-0.022-0.02926.4320.0460.0460.0000.0000.0000.000
147A149MET00.0570.02425.240-0.022-0.0220.0000.0000.0000.000
148A151MET0-0.012-0.01527.489-0.021-0.0210.0000.0000.0000.000
149A152THR0-0.0180.01130.362-0.019-0.0190.0000.0000.0000.000
150A153ILE00.0280.01526.727-0.011-0.0110.0000.0000.0000.000
151A154ARG10.9210.96728.795-0.284-0.2840.0000.0000.0000.000
152A155GLY00.0090.00131.973-0.009-0.0090.0000.0000.0000.000
153A156VAL0-0.045-0.02233.475-0.009-0.0090.0000.0000.0000.000
154A157ASN0-0.0210.00234.856-0.002-0.0020.0000.0000.0000.000
155A158LYS10.9410.96634.986-0.189-0.1890.0000.0000.0000.000
156A159PRO00.0510.02934.3390.0100.0100.0000.0000.0000.000
157A160GLY00.0050.00534.462-0.014-0.0140.0000.0000.0000.000
158A161THR0-0.056-0.02534.276-0.013-0.0130.0000.0000.0000.000
159A162LYS10.9130.96032.890-0.231-0.2310.0000.0000.0000.000
160A163THR00.0020.00430.553-0.017-0.0170.0000.0000.0000.000
161A164ILE00.0060.00231.6820.0140.0140.0000.0000.0000.000
162A165THR0-0.018-0.01628.892-0.008-0.0080.0000.0000.0000.000
163A166SER0-0.022-0.02631.844-0.003-0.0030.0000.0000.0000.000
164A167ALA00.0080.01430.235-0.003-0.0030.0000.0000.0000.000
165A168VAL0-0.0060.00732.2040.0000.0000.0000.0000.0000.000
166A169ARG10.7650.83729.551-0.146-0.1460.0000.0000.0000.000
167A170GLY00.0220.01234.5890.0000.0000.0000.0000.0000.000
168A171ALA00.0960.02537.1030.0010.0010.0000.0000.0000.000
169A172PHE00.0310.02336.4060.0000.0000.0000.0000.0000.000
170A173LYS10.8740.93835.224-0.095-0.0950.0000.0000.0000.000
171A174ASN0-0.049-0.03639.528-0.001-0.0010.0000.0000.0000.000
172A175ASP-1-0.805-0.88142.5210.0720.0720.0000.0000.0000.000
173A176ASP-1-0.912-0.98243.2130.0840.0840.0000.0000.0000.000
174A177LYS10.9390.97144.813-0.066-0.0660.0000.0000.0000.000
175A178LEU00.0830.06040.5550.0050.0050.0000.0000.0000.000
176A179ARG10.8540.90939.456-0.094-0.0940.0000.0000.0000.000
177A180SER0-0.023-0.01441.1320.0090.0090.0000.0000.0000.000
178A181GLU-1-0.918-0.95243.3810.0880.0880.0000.0000.0000.000
179A182VAL0-0.012-0.00236.7430.0050.0050.0000.0000.0000.000
180A183LEU0-0.021-0.01938.4110.0080.0080.0000.0000.0000.000
181A184ALA0-0.041-0.00840.6190.0040.0040.0000.0000.0000.000
182A185LEU0-0.022-0.01940.0310.0030.0030.0000.0000.0000.000
183A186ILE0-0.004-0.01235.4090.0060.0060.0000.0000.0000.000
184A187LYS10.9320.99538.367-0.111-0.1110.0000.0000.0000.000
185A188HIS00.0070.00139.6730.0080.0080.0000.0000.0000.000