Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 8968Y

Calculation Name: 1I1Q-B-Xray372

Preferred Name: Anthranilate synthase component 1

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1I1Q

Chain ID: B

ChEMBL ID: CHEMBL1075109

UniProt ID: P00898

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 192
LigandCharge CYM=-1
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2078248.917662
FMO2-HF: Nuclear repulsion 2004857.996955
FMO2-HF: Total energy -73390.920707
FMO2-MP2: Total energy -73602.865606


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:1:ALA)


Summations of interaction energy for fragment #1(B:1:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-21.233-16.55811.928-6.775-9.8270.016
Interaction energy analysis for fragmet #1(B:1:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.031 / q_NPA : 0.011
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B3ILE00.005-0.0082.939-0.1411.5910.127-0.612-1.2470.001
4B4LEU0-0.025-0.0055.4490.1480.1480.0000.0000.0000.000
5B5LEU0-0.011-0.0199.1980.1050.1050.0000.0000.0000.000
6B6LEU0-0.010-0.01510.786-0.026-0.0260.0000.0000.0000.000
7B7ASP-1-0.811-0.91614.3080.0550.0550.0000.0000.0000.000
8B8ASN0-0.045-0.05516.750-0.046-0.0460.0000.0000.0000.000
9B9ILE0-0.046-0.02719.7000.0040.0040.0000.0000.0000.000
10B10ASP-1-0.757-0.88619.4760.1180.1180.0000.0000.0000.000
11B11SER0-0.095-0.04620.825-0.007-0.0070.0000.0000.0000.000
12B12PHE0-0.025-0.01418.7310.0090.0090.0000.0000.0000.000
13B13THR00.006-0.00414.7050.0470.0470.0000.0000.0000.000
14B14TRP00.017-0.01714.2760.0300.0300.0000.0000.0000.000
15B15ASN00.0210.03414.9130.0370.0370.0000.0000.0000.000
16B16LEU00.0120.00811.4330.0760.0760.0000.0000.0000.000
17B17ALA0-0.033-0.02410.4110.1440.1440.0000.0000.0000.000
18B18ASP-1-0.915-0.95610.6230.5260.5260.0000.0000.0000.000
19B19GLN00.0360.03311.1740.0150.0150.0000.0000.0000.000
20B20LEU0-0.026-0.0095.8740.2670.2670.0000.0000.0000.000
21B21ARG10.9020.9387.4710.5010.5010.0000.0000.0000.000
22B22THR0-0.0050.0048.953-0.042-0.0420.0000.0000.0000.000
23B23ASN0-0.105-0.0547.757-0.358-0.3580.0000.0000.0000.000
24B24GLY0-0.015-0.0036.3610.7460.7460.0000.0000.0000.000
25B25HIS10.7820.8952.111-22.499-22.0826.331-3.012-3.7360.033
26B26ASN00.0240.0193.333-1.362-0.7730.003-0.162-0.4290.000
27B27VAL00.0190.0095.336-0.333-0.416-0.001-0.0140.0980.000
28B28VAL0-0.052-0.0257.9900.0500.0500.0000.0000.0000.000
29B29ILE00.0120.01311.0830.0120.0120.0000.0000.0000.000
30B30TYR0-0.026-0.01113.564-0.036-0.0360.0000.0000.0000.000
31B31ARG10.9230.96716.3370.0410.0410.0000.0000.0000.000
32B32ASN00.0280.01919.266-0.032-0.0320.0000.0000.0000.000
33B33HIS00.0770.03220.3280.0060.0060.0000.0000.0000.000
34B34ILE0-0.083-0.03519.132-0.007-0.0070.0000.0000.0000.000
35B35PRO00.018-0.00121.7170.0010.0010.0000.0000.0000.000
36B36ALA00.1050.05219.0960.0070.0070.0000.0000.0000.000
37B37GLN00.0180.01518.402-0.013-0.0130.0000.0000.0000.000
38B38THR00.0350.01419.015-0.017-0.0170.0000.0000.0000.000
39B39LEU00.0000.00215.018-0.039-0.0390.0000.0000.0000.000
40B40ILE00.0170.00614.499-0.077-0.0770.0000.0000.0000.000
41B41ASP-1-0.860-0.92615.044-0.331-0.3310.0000.0000.0000.000
42B42ARG10.9230.97112.3950.5410.5410.0000.0000.0000.000
43B43LEU00.020-0.0139.364-0.114-0.1140.0000.0000.0000.000
44B44ALA0-0.085-0.02510.853-0.134-0.1340.0000.0000.0000.000
45B45THR0-0.045-0.02412.5400.0420.0420.0000.0000.0000.000
46B46MET0-0.088-0.0447.103-0.010-0.0100.0000.0000.0000.000
47B47LYS10.9600.9786.1631.1791.1790.0000.0000.0000.000
48B48ASN0-0.058-0.0062.3180.3300.8891.526-1.026-1.0590.000
49B49PRO00.0270.0003.520-1.513-0.9310.022-0.347-0.257-0.002
50B50VAL00.0360.0263.017-0.1020.3500.127-0.123-0.456-0.001
51B51LEU0-0.0180.0045.553-0.055-0.0550.0000.0000.0000.000
52B52MET0-0.008-0.0017.1500.1190.1190.0000.0000.0000.000
53B53LEU0-0.024-0.02810.097-0.055-0.0550.0000.0000.0000.000
54B54SER00.0260.01113.8300.0340.0340.0000.0000.0000.000
55B55PRO00.0410.03515.326-0.023-0.0230.0000.0000.0000.000
56B56GLY00.0570.02818.714-0.015-0.0150.0000.0000.0000.000
57B57PRO0-0.031-0.00521.9110.0040.0040.0000.0000.0000.000
58B58GLY00.0380.01625.292-0.007-0.0070.0000.0000.0000.000
59B59VAL00.0210.01426.4690.0080.0080.0000.0000.0000.000
60B60PRO00.0130.00122.640-0.008-0.0080.0000.0000.0000.000
61B61SER00.009-0.00923.981-0.010-0.0100.0000.0000.0000.000
62B62GLU-1-0.994-0.98626.561-0.010-0.0100.0000.0000.0000.000
63B63ALA00.0280.02021.9500.0030.0030.0000.0000.0000.000
64B64GLY00.013-0.01122.057-0.010-0.0100.0000.0000.0000.000
65B65CYS0-0.047-0.01919.460-0.001-0.0010.0000.0000.0000.000
66B66MET00.0370.04016.641-0.009-0.0090.0000.0000.0000.000
67B67PRO00.0300.01919.205-0.010-0.0100.0000.0000.0000.000
68B68GLU-1-0.926-0.97521.148-0.119-0.1190.0000.0000.0000.000
69B69LEU0-0.023-0.01815.078-0.021-0.0210.0000.0000.0000.000
70B70LEU00.0060.00515.609-0.022-0.0220.0000.0000.0000.000
71B71THR0-0.036-0.00817.762-0.001-0.0010.0000.0000.0000.000
72B72ARG10.8750.93118.9170.1720.1720.0000.0000.0000.000
73B73LEU0-0.044-0.01512.816-0.040-0.0400.0000.0000.0000.000
74B74ARG10.9370.98614.7410.0330.0330.0000.0000.0000.000
75B75GLY00.0500.02414.6240.0060.0060.0000.0000.0000.000
76B76LYS10.8530.94112.5350.3910.3910.0000.0000.0000.000
77B77LEU0-0.035-0.0298.218-0.072-0.0720.0000.0000.0000.000
78B78PRO00.0260.0306.3230.0560.0560.0000.0000.0000.000
79B79ILE0-0.014-0.0158.604-0.076-0.0760.0000.0000.0000.000
80B80ILE00.003-0.0057.3520.0760.0760.0000.0000.0000.000
81B81GLY0-0.0050.00411.201-0.031-0.0310.0000.0000.0000.000
82B82ILE0-0.015-0.01412.4630.0390.0390.0000.0000.0000.000
83B83CYM-1-0.841-0.92116.0090.1000.1000.0000.0000.0000.000
84B84LEU00.0100.02219.804-0.010-0.0100.0000.0000.0000.000
85B85GLY00.020-0.00816.708-0.019-0.0190.0000.0000.0000.000
86B86HIS0-0.036-0.03517.713-0.002-0.0020.0000.0000.0000.000
87B87GLN00.014-0.00418.661-0.017-0.0170.0000.0000.0000.000
88B88ALA00.0490.03419.020-0.010-0.0100.0000.0000.0000.000
89B89ILE0-0.052-0.02414.733-0.013-0.0130.0000.0000.0000.000
90B90VAL0-0.007-0.00319.075-0.006-0.0060.0000.0000.0000.000
91B91GLU-1-0.900-0.95922.4370.0040.0040.0000.0000.0000.000
92B92ALA0-0.0420.00120.364-0.008-0.0080.0000.0000.0000.000
93B93TYR0-0.183-0.11417.728-0.008-0.0080.0000.0000.0000.000
94B94GLY0-0.033-0.01823.3050.0020.0020.0000.0000.0000.000
95B95GLY00.021-0.00726.7550.0060.0060.0000.0000.0000.000
96B96TYR0-0.022-0.00127.587-0.004-0.0040.0000.0000.0000.000
97B97VAL00.025-0.00726.3620.0090.0090.0000.0000.0000.000
98B98GLY00.0230.02629.138-0.006-0.0060.0000.0000.0000.000
99B99GLN00.0280.02730.5860.0070.0070.0000.0000.0000.000
100B100ALA0-0.009-0.04032.6770.0030.0030.0000.0000.0000.000
101B101GLY0-0.0080.01233.929-0.005-0.0050.0000.0000.0000.000
102B102GLU-1-0.929-0.96434.8360.0760.0760.0000.0000.0000.000
103B103ILE0-0.079-0.00930.0050.0060.0060.0000.0000.0000.000
104B104LEU0-0.008-0.00231.298-0.003-0.0030.0000.0000.0000.000
105B105HIS0-0.023-0.02328.8170.0060.0060.0000.0000.0000.000
106B106GLY00.0060.01627.847-0.005-0.0050.0000.0000.0000.000
107B107LYS10.8900.92728.016-0.102-0.1020.0000.0000.0000.000
108B108ALA00.0100.01426.5440.0040.0040.0000.0000.0000.000
109B109THR0-0.040-0.01426.753-0.016-0.0160.0000.0000.0000.000
110B110SER0-0.005-0.00726.4290.0140.0140.0000.0000.0000.000
111B111ILE0-0.0270.00021.549-0.015-0.0150.0000.0000.0000.000
112B112GLU-1-0.915-0.96225.7030.1280.1280.0000.0000.0000.000
113B113HIS0-0.045-0.02221.6010.0010.0010.0000.0000.0000.000
114B114ASP-1-0.817-0.91621.2780.1830.1830.0000.0000.0000.000
115B115GLY0-0.0040.01221.540-0.007-0.0070.0000.0000.0000.000
116B116GLN0-0.031-0.03419.6550.0000.0000.0000.0000.0000.000
117B117ALA0-0.034-0.02414.8310.0200.0200.0000.0000.0000.000
118B118MET00.0150.01612.7350.0000.0000.0000.0000.0000.000
119B119PHE00.0130.00314.1650.0460.0460.0000.0000.0000.000
120B120ALA0-0.0170.01017.082-0.027-0.0270.0000.0000.0000.000
121B121GLY0-0.010-0.01217.7440.0400.0400.0000.0000.0000.000
122B122LEU0-0.065-0.02416.7080.0060.0060.0000.0000.0000.000
123B123ALA00.0130.00320.834-0.023-0.0230.0000.0000.0000.000
124B124ASN00.0470.01924.0690.0160.0160.0000.0000.0000.000
125B125PRO0-0.0020.01925.3980.0040.0040.0000.0000.0000.000
126B126LEU00.0520.01319.4500.0040.0040.0000.0000.0000.000
127B127PRO0-0.027-0.01624.164-0.007-0.0070.0000.0000.0000.000
128B128VAL00.0000.01020.8020.0240.0240.0000.0000.0000.000
129B129ALA00.000-0.00821.900-0.025-0.0250.0000.0000.0000.000
130B130ARG10.9160.96222.658-0.112-0.1120.0000.0000.0000.000
131B131TYR00.029-0.00823.520-0.009-0.0090.0000.0000.0000.000
132B132HIS00.0790.06724.976-0.004-0.0040.0000.0000.0000.000
133B133SER0-0.021-0.01226.685-0.007-0.0070.0000.0000.0000.000
134B134LEU00.017-0.01526.231-0.002-0.0020.0000.0000.0000.000
135B135VAL00.029-0.00229.4830.0060.0060.0000.0000.0000.000
136B136GLY0-0.0080.01027.560-0.007-0.0070.0000.0000.0000.000
137B137SER0-0.041-0.02127.6000.0080.0080.0000.0000.0000.000
138B138ASN0-0.058-0.03829.169-0.007-0.0070.0000.0000.0000.000
139B139VAL00.0510.03024.074-0.004-0.0040.0000.0000.0000.000
140B140PRO00.0130.01825.3810.0010.0010.0000.0000.0000.000
141B141ALA00.0200.01526.4040.0070.0070.0000.0000.0000.000
142B142GLY0-0.037-0.02523.764-0.006-0.0060.0000.0000.0000.000
143B143LEU0-0.017-0.00519.3290.0040.0040.0000.0000.0000.000
144B144THR00.0090.00020.826-0.002-0.0020.0000.0000.0000.000
145B145ILE00.0070.00221.3260.0120.0120.0000.0000.0000.000
146B146ASN00.0100.00317.600-0.018-0.0180.0000.0000.0000.000
147B147ALA00.007-0.00621.2780.0170.0170.0000.0000.0000.000
148B148HIS0-0.0150.00023.269-0.014-0.0140.0000.0000.0000.000
149B149PHE00.0740.02426.3040.0080.0080.0000.0000.0000.000
150B150ASN00.0130.02528.712-0.009-0.0090.0000.0000.0000.000
151B151GLY00.012-0.00931.526-0.004-0.0040.0000.0000.0000.000
152B152MET0-0.088-0.02928.584-0.005-0.0050.0000.0000.0000.000
153B153VAL00.0420.01423.4930.0090.0090.0000.0000.0000.000
154B154MET0-0.034-0.02022.649-0.002-0.0020.0000.0000.0000.000
155B155ALA0-0.022-0.00218.4900.0210.0210.0000.0000.0000.000
156B156VAL00.0120.01718.652-0.019-0.0190.0000.0000.0000.000
157B157ARG10.8800.93316.065-0.147-0.1470.0000.0000.0000.000
158B158HIS00.0830.03816.079-0.007-0.0070.0000.0000.0000.000
159B159ASP-1-0.874-0.94115.6520.1310.1310.0000.0000.0000.000
160B160ALA0-0.064-0.04615.710-0.003-0.0030.0000.0000.0000.000
161B161ASP-1-0.785-0.87615.376-0.047-0.0470.0000.0000.0000.000
162B162ARG10.7710.93210.429-0.166-0.1660.0000.0000.0000.000
163B163VAL00.0450.02111.0180.0000.0000.0000.0000.0000.000
164B164CYS0-0.068-0.03611.7240.0460.0460.0000.0000.0000.000
165B165GLY00.0610.03413.8810.0000.0000.0000.0000.0000.000
166B166PHE0-0.022-0.00512.5480.0100.0100.0000.0000.0000.000
167B167GLN00.0060.00417.662-0.008-0.0080.0000.0000.0000.000
168B168PHE0-0.004-0.00517.526-0.011-0.0110.0000.0000.0000.000
169B169HIS00.0190.00118.0010.0020.0020.0000.0000.0000.000
170B170PRO0-0.0400.00813.989-0.002-0.0020.0000.0000.0000.000
171B171GLU-1-0.761-0.91814.6940.3180.3180.0000.0000.0000.000
172B172SER0-0.0270.00816.240-0.028-0.0280.0000.0000.0000.000
173B173ILE00.0520.01620.0350.0190.0190.0000.0000.0000.000
174B174LEU0-0.063-0.04122.082-0.002-0.0020.0000.0000.0000.000
175B175THR0-0.056-0.03218.681-0.021-0.0210.0000.0000.0000.000
176B176THR00.0380.01819.5550.0350.0350.0000.0000.0000.000
177B177GLN0-0.010-0.01618.5040.0110.0110.0000.0000.0000.000
178B178GLY00.0410.02616.2850.0420.0420.0000.0000.0000.000
179B179ALA00.0330.00712.9420.0620.0620.0000.0000.0000.000
180B180ARG10.9620.98411.962-0.396-0.3960.0000.0000.0000.000
181B181LEU00.0290.02512.6360.0820.0820.0000.0000.0000.000
182B182LEU00.0290.0218.0310.0240.0240.0000.0000.0000.000
183B183GLU-1-0.791-0.9027.4323.0333.0330.0000.0000.0000.000
184B184GLN0-0.094-0.0568.1370.1250.1250.0000.0000.0000.000
185B185THR0-0.005-0.0249.369-0.137-0.1370.0000.0000.0000.000
186B186LEU00.0080.0053.571-0.443-0.1470.011-0.065-0.2410.000
187B187ALA0-0.033-0.0095.447-0.089-0.0890.0000.0000.0000.000
188B188TRP0-0.0050.0037.007-0.238-0.2380.0000.0000.0000.000
189B189ALA0-0.002-0.0246.612-0.141-0.1410.0000.0000.0000.000
190B190GLN0-0.050-0.0232.341-1.515-1.3843.782-1.414-2.500-0.015
191B191GLN0-0.034-0.0026.488-0.077-0.0770.0000.0000.0000.000
192B192LYS10.9510.97810.007-0.072-0.0720.0000.0000.0000.000