Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: JQN89

Calculation Name: 1UAI-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UAI

Chain ID: A

ChEMBL ID:

UniProt ID: Q9RB42

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 221
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2681631.01912
FMO2-HF: Nuclear repulsion 2596287.840068
FMO2-HF: Total energy -85343.179052
FMO2-MP2: Total energy -85592.747274


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:GLU)


Summations of interaction energy for fragment #1(A:2:GLU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
44.79722.8933.4096.452-17.9530.025
Interaction energy analysis for fragmet #1(A:2:GLU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.963 / q_NPA : -0.921
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4CYS0-0.044-0.0281.861-26.751-44.39611.71112.997-7.0620.064
4A5ASP-1-0.850-0.9072.15359.19959.3288.017-2.595-5.551-0.025
5A6TYR0-0.009-0.0224.192-9.641-9.3270.000-0.039-0.2750.000
6A7PRO0-0.034-0.0256.2232.1142.1140.0000.0000.0000.000
7A8ALA00.0120.0088.084-0.462-0.4620.0000.0000.0000.000
8A9GLN00.0440.0271.6986.5551.85013.681-3.911-5.065-0.014
9A10GLN0-0.090-0.0545.452-4.119-4.1190.0000.0000.0000.000
10A11LEU0-0.078-0.0438.122-3.153-3.1530.0000.0000.0000.000
11A12ASP-1-0.818-0.88510.15620.11120.1110.0000.0000.0000.000
12A13LEU0-0.074-0.05811.520-1.534-1.5340.0000.0000.0000.000
13A14THR00.0230.01513.425-0.557-0.5570.0000.0000.0000.000
14A15ASP-1-0.846-0.93014.91013.47213.4720.0000.0000.0000.000
15A16TRP0-0.053-0.03416.204-0.929-0.9290.0000.0000.0000.000
16A17LYS10.9250.97317.739-11.966-11.9660.0000.0000.0000.000
17A18VAL0-0.024-0.01216.291-0.167-0.1670.0000.0000.0000.000
18A19THR0-0.036-0.02719.030-0.298-0.2980.0000.0000.0000.000
19A20LEU0-0.033-0.02317.3900.3930.3930.0000.0000.0000.000
20A21PRO0-0.0050.00220.652-0.646-0.6460.0000.0000.0000.000
21A22ILE00.0300.02319.808-0.418-0.4180.0000.0000.0000.000
22A23GLY00.0330.01623.9660.0740.0740.0000.0000.0000.000
23A24SER0-0.0130.00425.835-0.147-0.1470.0000.0000.0000.000
24A25SER00.020-0.01429.4210.0700.0700.0000.0000.0000.000
25A26GLY00.0430.02832.081-0.135-0.1350.0000.0000.0000.000
26A27LYS10.9460.97828.271-10.675-10.6750.0000.0000.0000.000
27A28PRO0-0.022-0.00325.7450.2600.2600.0000.0000.0000.000
28A29SER0-0.012-0.01622.121-0.115-0.1150.0000.0000.0000.000
29A30GLU-1-0.827-0.89821.44512.49612.4960.0000.0000.0000.000
30A31ILE0-0.047-0.01015.847-0.162-0.1620.0000.0000.0000.000
31A32GLU-1-0.897-0.96018.44612.99312.9930.0000.0000.0000.000
32A33GLN00.0220.02612.6951.0251.0250.0000.0000.0000.000
33A34PRO00.0660.01514.858-0.715-0.7150.0000.0000.0000.000
34A35ALA0-0.002-0.01113.5881.1921.1920.0000.0000.0000.000
35A36LEU0-0.068-0.04713.1441.2321.2320.0000.0000.0000.000
36A37ASP-1-0.912-0.9549.01227.22427.2240.0000.0000.0000.000
37A38THR0-0.062-0.0187.4732.4202.4200.0000.0000.0000.000
38A39PHE0-0.0150.0069.369-0.858-0.8580.0000.0000.0000.000
39A40ALA00.023-0.0129.4971.3701.3700.0000.0000.0000.000
40A41THR0-0.071-0.02611.627-1.360-1.3600.0000.0000.0000.000
41A42ALA00.0270.04213.356-0.492-0.4920.0000.0000.0000.000
42A43PRO0-0.050-0.04115.079-1.049-1.0490.0000.0000.0000.000
43A44TRP00.018-0.01416.697-0.076-0.0760.0000.0000.0000.000
44A45PHE00.0740.05812.799-0.605-0.6050.0000.0000.0000.000
45A46GLN00.0210.00710.727-1.046-1.0460.0000.0000.0000.000
46A47VAL00.0900.0845.652-3.158-3.1580.0000.0000.0000.000
47A48ASN0-0.006-0.0109.0020.9860.9860.0000.0000.0000.000
48A49ALA00.0480.0069.1782.6292.6290.0000.0000.0000.000
49A50LYS10.8860.9329.501-19.332-19.3320.0000.0000.0000.000
50A52THR0-0.007-0.0107.804-0.485-0.4850.0000.0000.0000.000
51A53GLY00.0750.02410.602-2.181-2.1810.0000.0000.0000.000
52A54VAL0-0.0270.01410.4172.3002.3000.0000.0000.0000.000
53A55GLN0-0.076-0.03812.269-1.766-1.7660.0000.0000.0000.000
54A56PHE00.0330.01314.6930.3910.3910.0000.0000.0000.000
55A57ARG10.8380.91117.518-17.056-17.0560.0000.0000.0000.000
56A58ALA00.0480.02520.1880.0940.0940.0000.0000.0000.000
57A59ALA00.0090.01423.475-0.318-0.3180.0000.0000.0000.000
58A60VAL00.0010.00626.216-0.129-0.1290.0000.0000.0000.000
59A61ASN0-0.010-0.03328.200-0.094-0.0940.0000.0000.0000.000
60A62GLY0-0.034-0.00226.9030.0410.0410.0000.0000.0000.000
61A63VAL0-0.019-0.01326.747-0.469-0.4690.0000.0000.0000.000
62A64THR0-0.013-0.01127.7490.1880.1880.0000.0000.0000.000
63A65THR00.0390.00530.2710.0200.0200.0000.0000.0000.000
64A66SER0-0.023-0.01332.053-0.172-0.1720.0000.0000.0000.000
65A67GLY0-0.010-0.00433.894-0.166-0.1660.0000.0000.0000.000
66A68SER0-0.082-0.02134.823-0.134-0.1340.0000.0000.0000.000
67A69GLY00.0700.02833.8210.0240.0240.0000.0000.0000.000
68A70TYR0-0.0310.00130.427-0.071-0.0710.0000.0000.0000.000
69A71PRO0-0.0010.01526.5520.1280.1280.0000.0000.0000.000
70A72ARG10.8850.92123.687-11.473-11.4730.0000.0000.0000.000
71A73SER0-0.007-0.00518.0360.1430.1430.0000.0000.0000.000
72A74GLU-1-0.833-0.91820.34812.41812.4180.0000.0000.0000.000
73A75LEU00.0530.03615.810-0.097-0.0970.0000.0000.0000.000
74A76ARG10.8200.89919.921-11.992-11.9920.0000.0000.0000.000
75A77GLU-1-0.729-0.86121.48711.92811.9280.0000.0000.0000.000
76A78MET0-0.0380.00120.591-0.842-0.8420.0000.0000.0000.000
77A79THR0-0.003-0.01122.3840.1560.1560.0000.0000.0000.000
78A80ASP-1-0.916-0.96022.95711.43211.4320.0000.0000.0000.000
79A81GLY00.0430.02518.6110.0510.0510.0000.0000.0000.000
80A82GLY0-0.023-0.02318.6350.4670.4670.0000.0000.0000.000
81A83GLU-1-0.973-0.95619.78113.01213.0120.0000.0000.0000.000
82A84GLU-1-0.968-0.97522.6609.7879.7870.0000.0000.0000.000
83A85LYS10.8850.91524.439-10.090-10.0900.0000.0000.0000.000
84A86ALA00.0280.03324.902-0.324-0.3240.0000.0000.0000.000
85A87SER00.005-0.01326.790-0.204-0.2040.0000.0000.0000.000
86A88TRP0-0.035-0.02227.148-0.465-0.4650.0000.0000.0000.000
87A89SER00.0260.00531.856-0.117-0.1170.0000.0000.0000.000
88A90ALA00.0550.03034.2290.1900.1900.0000.0000.0000.000
89A91THR0-0.038-0.03236.180-0.039-0.0390.0000.0000.0000.000
90A92SER0-0.0170.01337.069-0.123-0.1230.0000.0000.0000.000
91A93GLY00.0380.02433.7810.2240.2240.0000.0000.0000.000
92A94THR0-0.045-0.03130.600-0.210-0.2100.0000.0000.0000.000
93A95HIS10.7890.87428.761-9.299-9.2990.0000.0000.0000.000
94A96THR0-0.003-0.00325.451-0.329-0.3290.0000.0000.0000.000
95A97MET00.0310.04822.2550.4660.4660.0000.0000.0000.000
96A98VAL0-0.071-0.04321.571-0.436-0.4360.0000.0000.0000.000
97A99PHE00.0370.01719.9460.5870.5870.0000.0000.0000.000
98A100ARG10.8210.89118.494-15.610-15.6100.0000.0000.0000.000
99A101GLU-1-0.808-0.91518.66414.99714.9970.0000.0000.0000.000
100A102ALA00.0010.00420.117-0.629-0.6290.0000.0000.0000.000
101A103PHE00.0570.03321.0400.5120.5120.0000.0000.0000.000
102A104ASN0-0.005-0.02219.1890.3850.3850.0000.0000.0000.000
103A105HIS0-0.040-0.01822.484-0.134-0.1340.0000.0000.0000.000
104A106LEU0-0.015-0.00224.8330.0460.0460.0000.0000.0000.000
105A107PRO0-0.0140.00828.1440.0340.0340.0000.0000.0000.000
106A108GLU-1-0.848-0.94330.1349.7729.7720.0000.0000.0000.000
107A109VAL0-0.0300.01133.258-0.106-0.1060.0000.0000.0000.000
108A110LYS10.8160.89335.003-9.298-9.2980.0000.0000.0000.000
109A111PRO00.0250.02731.9910.2680.2680.0000.0000.0000.000
110A112HIS00.0220.00331.9450.0370.0370.0000.0000.0000.000
111A113LEU0-0.045-0.01124.2810.1440.1440.0000.0000.0000.000
112A114VAL0-0.023-0.01027.133-0.166-0.1660.0000.0000.0000.000
113A115GLY00.0280.01323.8860.3390.3390.0000.0000.0000.000
114A116ALA00.0350.02123.1320.4980.4980.0000.0000.0000.000
115A117GLN0-0.060-0.05425.260-0.892-0.8920.0000.0000.0000.000
116A118ILE0-0.0120.01227.2070.3230.3230.0000.0000.0000.000
117A119HIS0-0.044-0.01229.804-0.123-0.1230.0000.0000.0000.000
118A120ASP-1-0.766-0.89531.2768.6808.6800.0000.0000.0000.000
119A121GLY0-0.071-0.04333.5270.1610.1610.0000.0000.0000.000
120A122ASP-1-0.994-0.99135.4007.7417.7410.0000.0000.0000.000
121A123ASP-1-0.932-0.98235.0868.7828.7820.0000.0000.0000.000
122A124ASP-1-0.918-0.93932.4699.3479.3470.0000.0000.0000.000
123A125VAL0-0.009-0.00533.264-0.272-0.2720.0000.0000.0000.000
124A126THR0-0.095-0.07132.163-0.184-0.1840.0000.0000.0000.000
125A127VAL00.0190.00729.5370.3700.3700.0000.0000.0000.000
126A128PHE0-0.032-0.00627.350-0.301-0.3010.0000.0000.0000.000
127A129ARG10.8800.90928.532-8.972-8.9720.0000.0000.0000.000
128A130LEU0-0.0060.00827.969-0.254-0.2540.0000.0000.0000.000
129A131GLU-1-0.801-0.88030.7228.8258.8250.0000.0000.0000.000
130A132GLY00.0100.00732.673-0.249-0.2490.0000.0000.0000.000
131A133THR0-0.008-0.01031.6900.2950.2950.0000.0000.0000.000
132A134SER0-0.027-0.01133.348-0.129-0.1290.0000.0000.0000.000
133A135LEU0-0.0200.01029.0880.1190.1190.0000.0000.0000.000
134A136TYR00.012-0.00732.533-0.383-0.3830.0000.0000.0000.000
135A137ILE0-0.0160.01131.4510.3290.3290.0000.0000.0000.000
136A138THR00.001-0.00133.702-0.230-0.2300.0000.0000.0000.000
137A139LYS10.9490.96835.808-7.512-7.5120.0000.0000.0000.000
138A140GLY00.0100.01737.281-0.242-0.2420.0000.0000.0000.000
139A141ASP-1-0.848-0.92037.6687.9627.9620.0000.0000.0000.000
140A142ASP-1-0.936-0.96239.9917.6307.6300.0000.0000.0000.000
141A143THR00.001-0.03636.7000.1540.1540.0000.0000.0000.000
142A144HIS10.7910.86836.889-7.945-7.9450.0000.0000.0000.000
143A145HIS00.0180.05138.012-0.046-0.0460.0000.0000.0000.000
144A146LYS10.9320.97037.156-8.345-8.3450.0000.0000.0000.000
145A147LEU00.0060.00836.5510.2530.2530.0000.0000.0000.000
146A148VAL0-0.054-0.03131.985-0.127-0.1270.0000.0000.0000.000
147A149THR00.005-0.00632.317-0.169-0.1690.0000.0000.0000.000
148A150SER00.0330.02434.9190.0850.0850.0000.0000.0000.000
149A151ASP-1-0.944-0.97934.7319.3499.3490.0000.0000.0000.000
150A152TYR0-0.032-0.02124.6830.3010.3010.0000.0000.0000.000
151A153LYS10.9430.97028.647-10.117-10.1170.0000.0000.0000.000
152A154LEU00.0410.01725.3630.3800.3800.0000.0000.0000.000
153A155ASN0-0.016-0.01721.5610.5250.5250.0000.0000.0000.000
154A156THR0-0.0290.00322.0720.4340.4340.0000.0000.0000.000
155A157VAL0-0.0160.00519.302-0.125-0.1250.0000.0000.0000.000
156A158PHE0-0.062-0.01622.432-0.592-0.5920.0000.0000.0000.000
157A159GLU-1-0.832-0.91322.67313.74413.7440.0000.0000.0000.000
158A160GLY00.0110.01924.015-0.677-0.6770.0000.0000.0000.000
159A161LYS10.9000.95224.773-10.238-10.2380.0000.0000.0000.000
160A162PHE00.0500.04126.783-0.463-0.4630.0000.0000.0000.000
161A163VAL0-0.014-0.01828.3730.2320.2320.0000.0000.0000.000
162A164VAL0-0.0090.00830.929-0.318-0.3180.0000.0000.0000.000
163A165SER00.0260.00733.1370.0870.0870.0000.0000.0000.000
164A166GLY00.0160.00835.850-0.106-0.1060.0000.0000.0000.000
165A167GLY00.0070.00538.674-0.191-0.1910.0000.0000.0000.000
166A168LYS10.8320.90538.333-7.391-7.3910.0000.0000.0000.000
167A169ILE00.0590.04132.9730.1750.1750.0000.0000.0000.000
168A170LYS10.8440.92633.805-8.223-8.2230.0000.0000.0000.000
169A171VAL00.0710.03830.7750.3040.3040.0000.0000.0000.000
170A172TYR0-0.045-0.03629.619-0.371-0.3710.0000.0000.0000.000
171A173TYR00.0670.02728.4750.2620.2620.0000.0000.0000.000
172A174ASN00.022-0.00126.9410.0880.0880.0000.0000.0000.000
173A175GLY00.0110.00828.664-0.206-0.2060.0000.0000.0000.000
174A176VAL0-0.0040.00830.190-0.321-0.3210.0000.0000.0000.000
175A177LEU0-0.053-0.02533.3280.1590.1590.0000.0000.0000.000
176A178GLN0-0.025-0.02033.340-0.321-0.3210.0000.0000.0000.000
177A179THR00.013-0.01435.809-0.315-0.3150.0000.0000.0000.000
178A180THR0-0.016-0.01336.5200.1850.1850.0000.0000.0000.000
179A181ILE00.0240.02536.143-0.272-0.2720.0000.0000.0000.000
180A182SER0-0.047-0.02538.8360.0760.0760.0000.0000.0000.000
181A183HIS00.013-0.00335.747-0.186-0.1860.0000.0000.0000.000
182A184THR0-0.004-0.02139.1600.0770.0770.0000.0000.0000.000
183A185SER00.0310.05038.048-0.065-0.0650.0000.0000.0000.000
184A186SER0-0.023-0.02736.2100.1640.1640.0000.0000.0000.000
185A187GLY00.0420.02233.676-0.058-0.0580.0000.0000.0000.000
186A188ASN0-0.032-0.00631.6610.0820.0820.0000.0000.0000.000
187A189TYR0-0.042-0.01326.4780.3080.3080.0000.0000.0000.000
188A190PHE00.021-0.00324.099-0.207-0.2070.0000.0000.0000.000
189A191LYS10.8650.93023.305-11.771-11.7710.0000.0000.0000.000
190A192ALA00.0290.00820.215-0.305-0.3050.0000.0000.0000.000
191A193GLY00.0200.02719.5030.6150.6150.0000.0000.0000.000
192A194ALA0-0.0020.00320.445-0.408-0.4080.0000.0000.0000.000
193A195TYR00.0330.01222.482-0.071-0.0710.0000.0000.0000.000
194A196THR00.029-0.02025.765-0.261-0.2610.0000.0000.0000.000
195A197GLN0-0.058-0.02327.792-0.679-0.6790.0000.0000.0000.000
196A198ALA00.0260.00331.181-0.361-0.3610.0000.0000.0000.000
197A199ASN00.0660.03931.3110.1630.1630.0000.0000.0000.000
198A200CYS0-0.014-0.01833.0880.2630.2630.0000.0000.0000.000
199A201SER0-0.076-0.03135.477-0.257-0.2570.0000.0000.0000.000
200A202ASN00.028-0.00636.047-0.015-0.0150.0000.0000.0000.000
201A203SER0-0.013-0.00333.7710.0870.0870.0000.0000.0000.000
202A204SER0-0.0280.01035.678-0.029-0.0290.0000.0000.0000.000
203A205PRO00.0790.01932.4760.0060.0060.0000.0000.0000.000
204A207SER00.0240.01229.6330.1600.1600.0000.0000.0000.000
205A208SER00.0670.01924.953-0.017-0.0170.0000.0000.0000.000
206A209SER0-0.065-0.04225.1810.4730.4730.0000.0000.0000.000
207A210ASN00.0120.02926.6690.2450.2450.0000.0000.0000.000
208A211TYR00.001-0.02722.1540.2560.2560.0000.0000.0000.000
209A212GLY00.0520.05225.251-0.202-0.2020.0000.0000.0000.000
210A213GLN0-0.020-0.02317.9910.2750.2750.0000.0000.0000.000
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