Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: JQR69

Calculation Name: 1I1Q-B-Xray372

Preferred Name: Anthranilate synthase component 1

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1I1Q

Chain ID: B

ChEMBL ID: CHEMBL1075109

UniProt ID: P00898

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 192
LigandCharge CYM=-1
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2087398.783785
FMO2-HF: Nuclear repulsion 2014005.873008
FMO2-HF: Total energy -73392.910777
FMO2-MP2: Total energy -73604.668144


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:1:ALA)


Summations of interaction energy for fragment #1(B:1:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-27.471-27.27920.887-9.444-11.6310.013
Interaction energy analysis for fragmet #1(B:1:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.036 / q_NPA : 0.039
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B3ILE00.0150.0022.524-0.4281.1910.767-0.753-1.6320.000
4B4LEU0-0.022-0.0064.9960.0800.099-0.001-0.005-0.0120.000
5B5LEU0-0.008-0.0128.6270.0760.0760.0000.0000.0000.000
6B6LEU00.014-0.00710.530-0.026-0.0260.0000.0000.0000.000
7B7ASP-1-0.743-0.84814.0290.1710.1710.0000.0000.0000.000
8B8ASN0-0.035-0.03316.470-0.055-0.0550.0000.0000.0000.000
9B9ILE0-0.039-0.03119.528-0.002-0.0020.0000.0000.0000.000
10B10ASP-1-0.740-0.87618.8220.1910.1910.0000.0000.0000.000
11B11SER0-0.097-0.05120.612-0.005-0.0050.0000.0000.0000.000
12B12PHE0-0.022-0.00518.1470.0100.0100.0000.0000.0000.000
13B13THR0-0.003-0.02413.9170.0580.0580.0000.0000.0000.000
14B14TRP00.029-0.00613.5640.0730.0730.0000.0000.0000.000
15B15ASN00.0060.01314.1960.0440.0440.0000.0000.0000.000
16B16LEU0-0.0080.00510.4080.0870.0870.0000.0000.0000.000
17B17ALA0-0.008-0.0149.6610.1980.1980.0000.0000.0000.000
18B18ASP-1-0.921-0.95310.1280.7100.7100.0000.0000.0000.000
19B19GLN00.0080.00110.9310.1090.1090.0000.0000.0000.000
20B20LEU0-0.025-0.0114.9240.2750.2750.0000.0000.0000.000
21B21ARG10.9040.9356.8920.3060.3060.0000.0000.0000.000
22B22THR0-0.0220.0009.061-0.039-0.0390.0000.0000.0000.000
23B23ASN0-0.113-0.0657.583-0.414-0.4140.0000.0000.0000.000
24B24GLY0-0.0050.0036.5810.7600.7600.0000.0000.0000.000
25B25HIS10.7590.8371.855-24.848-31.08416.532-5.422-4.8740.041
26B26ASN0-0.021-0.0113.966-1.428-0.9310.001-0.119-0.3790.000
27B27VAL00.0110.0005.121-0.092-0.173-0.001-0.0160.0990.000
28B28VAL0-0.058-0.0217.588-0.008-0.0080.0000.0000.0000.000
29B29ILE00.0010.01210.632-0.007-0.0070.0000.0000.0000.000
30B30TYR0-0.003-0.00912.755-0.058-0.0580.0000.0000.0000.000
31B31ARG10.8570.92115.789-0.063-0.0630.0000.0000.0000.000
32B32ASN00.0140.00718.741-0.027-0.0270.0000.0000.0000.000
33B33HIS00.0660.03019.569-0.002-0.0020.0000.0000.0000.000
34B34ILE0-0.035-0.00518.355-0.010-0.0100.0000.0000.0000.000
35B35PRO00.0530.01620.570-0.003-0.0030.0000.0000.0000.000
36B36ALA00.0330.03218.561-0.005-0.0050.0000.0000.0000.000
37B37GLN0-0.033-0.02317.903-0.010-0.0100.0000.0000.0000.000
38B38THR00.0340.00918.308-0.020-0.0200.0000.0000.0000.000
39B39LEU0-0.014-0.00514.247-0.029-0.0290.0000.0000.0000.000
40B40ILE00.0140.00713.650-0.067-0.0670.0000.0000.0000.000
41B41ASP-1-0.827-0.90814.625-0.276-0.2760.0000.0000.0000.000
42B42ARG10.9070.96311.9030.3490.3490.0000.0000.0000.000
43B43LEU00.026-0.0098.646-0.107-0.1070.0000.0000.0000.000
44B44ALA0-0.053-0.01410.717-0.121-0.1210.0000.0000.0000.000
45B45THR0-0.075-0.03412.7590.0320.0320.0000.0000.0000.000
46B46MET0-0.091-0.0346.7390.0400.0400.0000.0000.0000.000
47B47LYS10.9380.9696.7211.1021.1020.0000.0000.0000.000
48B48ASN0-0.080-0.0422.5360.1000.5290.956-0.576-0.809-0.001
49B49PRO00.0210.0083.418-1.704-0.7340.056-0.556-0.471-0.004
50B50VAL00.0210.0102.406-0.1990.1261.015-0.396-0.944-0.004
51B51LEU0-0.0090.0105.0610.0560.036-0.001-0.0010.0230.000
52B52MET0-0.020-0.0126.3570.1170.1170.0000.0000.0000.000
53B53LEU0-0.013-0.0129.544-0.050-0.0500.0000.0000.0000.000
54B54SER00.027-0.00413.3620.0210.0210.0000.0000.0000.000
55B55PRO00.0430.02915.096-0.029-0.0290.0000.0000.0000.000
56B56GLY00.0260.02018.491-0.004-0.0040.0000.0000.0000.000
57B57PRO0-0.027-0.00121.551-0.001-0.0010.0000.0000.0000.000
58B58GLY00.0200.01424.779-0.005-0.0050.0000.0000.0000.000
59B59VAL0-0.009-0.01226.0740.0080.0080.0000.0000.0000.000
60B60PRO00.010-0.00321.733-0.004-0.0040.0000.0000.0000.000
61B61SER0-0.015-0.01223.069-0.007-0.0070.0000.0000.0000.000
62B62GLU-1-0.921-0.93925.5880.0230.0230.0000.0000.0000.000
63B63ALA0-0.0040.01521.0820.0010.0010.0000.0000.0000.000
64B64GLY0-0.030-0.02921.122-0.005-0.0050.0000.0000.0000.000
65B65CYS0-0.061-0.04018.978-0.002-0.0020.0000.0000.0000.000
66B66MET0-0.0040.02116.654-0.012-0.0120.0000.0000.0000.000
67B67PRO00.0680.04018.595-0.012-0.0120.0000.0000.0000.000
68B68GLU-1-0.853-0.90120.870-0.106-0.1060.0000.0000.0000.000
69B69LEU0-0.005-0.01314.127-0.018-0.0180.0000.0000.0000.000
70B70LEU00.0150.00015.028-0.024-0.0240.0000.0000.0000.000
71B71THR0-0.040-0.02917.000-0.013-0.0130.0000.0000.0000.000
72B72ARG10.7800.86918.5430.1280.1280.0000.0000.0000.000
73B73LEU0-0.047-0.02812.527-0.043-0.0430.0000.0000.0000.000
74B74ARG10.8850.95313.9610.0350.0350.0000.0000.0000.000
75B75GLY00.0040.00714.1870.0010.0010.0000.0000.0000.000
76B76LYS10.8940.96212.7200.3690.3690.0000.0000.0000.000
77B77LEU0-0.060-0.0317.821-0.089-0.0890.0000.0000.0000.000
78B78PRO00.0280.0275.9790.0840.0840.0000.0000.0000.000
79B79ILE0-0.023-0.0178.041-0.033-0.0330.0000.0000.0000.000
80B80ILE00.0200.0026.8050.0560.0560.0000.0000.0000.000
81B81GLY00.0060.00810.4950.0080.0080.0000.0000.0000.000
82B82ILE0-0.012-0.02312.1930.0300.0300.0000.0000.0000.000
83B83CYM-1-0.862-0.91515.9420.1210.1210.0000.0000.0000.000
84B84LEU00.0380.02919.774-0.011-0.0110.0000.0000.0000.000
85B85GLY00.0390.00916.290-0.021-0.0210.0000.0000.0000.000
86B86HIS0-0.097-0.04416.803-0.009-0.0090.0000.0000.0000.000
87B87GLN00.002-0.02117.874-0.028-0.0280.0000.0000.0000.000
88B88ALA00.0310.01618.186-0.014-0.0140.0000.0000.0000.000
89B89ILE0-0.049-0.01613.905-0.019-0.0190.0000.0000.0000.000
90B90VAL00.000-0.00118.440-0.012-0.0120.0000.0000.0000.000
91B91GLU-1-0.822-0.92221.9460.0150.0150.0000.0000.0000.000
92B92ALA0-0.041-0.02019.568-0.009-0.0090.0000.0000.0000.000
93B93TYR0-0.128-0.12117.095-0.013-0.0130.0000.0000.0000.000
94B94GLY0-0.0210.00922.632-0.002-0.0020.0000.0000.0000.000
95B95GLY0-0.026-0.01725.3480.0010.0010.0000.0000.0000.000
96B96TYR0-0.048-0.02426.865-0.003-0.0030.0000.0000.0000.000
97B97VAL00.028-0.00125.9560.0080.0080.0000.0000.0000.000
98B98GLY00.0130.01828.455-0.006-0.0060.0000.0000.0000.000
99B99GLN00.0370.01630.5000.0100.0100.0000.0000.0000.000
100B100ALA0-0.001-0.00732.3910.0010.0010.0000.0000.0000.000
101B101GLY00.0170.01233.359-0.006-0.0060.0000.0000.0000.000
102B102GLU-1-0.899-0.95933.7410.0880.0880.0000.0000.0000.000
103B103ILE0-0.082-0.04028.8620.0050.0050.0000.0000.0000.000
104B104LEU0-0.0050.01131.853-0.001-0.0010.0000.0000.0000.000
105B105HIS0-0.023-0.00828.6570.0100.0100.0000.0000.0000.000
106B106GLY00.0290.01927.487-0.005-0.0050.0000.0000.0000.000
107B107LYS10.8370.89827.516-0.124-0.1240.0000.0000.0000.000
108B108ALA00.0260.01825.6960.0070.0070.0000.0000.0000.000
109B109THR0-0.032-0.00726.286-0.016-0.0160.0000.0000.0000.000
110B110SER0-0.029-0.02226.0590.0100.0100.0000.0000.0000.000
111B111ILE0-0.060-0.01621.299-0.013-0.0130.0000.0000.0000.000
112B112GLU-1-0.866-0.92725.6510.1040.1040.0000.0000.0000.000
113B113HIS0-0.036-0.04021.066-0.003-0.0030.0000.0000.0000.000
114B114ASP-1-0.748-0.87720.2150.1280.1280.0000.0000.0000.000
115B115GLY00.0140.03221.134-0.010-0.0100.0000.0000.0000.000
116B116GLN0-0.089-0.06118.936-0.015-0.0150.0000.0000.0000.000
117B117ALA00.000-0.00914.1790.0210.0210.0000.0000.0000.000
118B118MET00.0180.02112.246-0.001-0.0010.0000.0000.0000.000
119B119PHE00.0270.00613.6290.0530.0530.0000.0000.0000.000
120B120ALA0-0.0180.01016.561-0.016-0.0160.0000.0000.0000.000
121B121GLY0-0.005-0.00917.4510.0340.0340.0000.0000.0000.000
122B122LEU0-0.043-0.00916.0900.0170.0170.0000.0000.0000.000
123B123ALA00.003-0.00220.291-0.025-0.0250.0000.0000.0000.000
124B124ASN00.0240.01223.5530.0090.0090.0000.0000.0000.000
125B125PRO00.0390.03125.3750.0000.0000.0000.0000.0000.000
126B126LEU00.0320.02319.1530.0030.0030.0000.0000.0000.000
127B127PRO00.005-0.00123.870-0.005-0.0050.0000.0000.0000.000
128B128VAL0-0.021-0.00420.4590.0280.0280.0000.0000.0000.000
129B129ALA00.0120.00321.484-0.025-0.0250.0000.0000.0000.000
130B130ARG10.8730.92322.217-0.119-0.1190.0000.0000.0000.000
131B131TYR00.0390.00223.234-0.010-0.0100.0000.0000.0000.000
132B132HIS00.0980.05824.330-0.004-0.0040.0000.0000.0000.000
133B133SER0-0.035-0.01826.003-0.008-0.0080.0000.0000.0000.000
134B134LEU0-0.015-0.00825.328-0.004-0.0040.0000.0000.0000.000
135B135VAL00.0180.01728.9130.0050.0050.0000.0000.0000.000
136B136GLY00.0340.02926.282-0.005-0.0050.0000.0000.0000.000
137B137SER0-0.039-0.05027.3370.0060.0060.0000.0000.0000.000
138B138ASN0-0.020-0.01028.1260.0000.0000.0000.0000.0000.000
139B139VAL00.0480.03423.709-0.004-0.0040.0000.0000.0000.000
140B140PRO00.0160.01625.1290.0000.0000.0000.0000.0000.000
141B141ALA00.0240.00725.4530.0040.0040.0000.0000.0000.000
142B142GLY0-0.021-0.00723.380-0.006-0.0060.0000.0000.0000.000
143B143LEU0-0.036-0.01818.8070.0010.0010.0000.0000.0000.000
144B144THR00.0040.00620.3670.0030.0030.0000.0000.0000.000
145B145ILE00.0200.00620.7170.0130.0130.0000.0000.0000.000
146B146ASN00.0040.00616.888-0.013-0.0130.0000.0000.0000.000
147B147ALA00.012-0.00320.9880.0140.0140.0000.0000.0000.000
148B148HIS0-0.043-0.03122.691-0.009-0.0090.0000.0000.0000.000
149B149PHE00.0660.01425.9990.0090.0090.0000.0000.0000.000
150B150ASN0-0.038-0.01728.479-0.009-0.0090.0000.0000.0000.000
151B151GLY00.0420.03630.463-0.007-0.0070.0000.0000.0000.000
152B152MET0-0.066-0.01528.034-0.001-0.0010.0000.0000.0000.000
153B153VAL00.0330.01423.1640.0080.0080.0000.0000.0000.000
154B154MET0-0.031-0.01222.6770.0010.0010.0000.0000.0000.000
155B155ALA0-0.032-0.01318.1590.0260.0260.0000.0000.0000.000
156B156VAL00.0050.00617.954-0.022-0.0220.0000.0000.0000.000
157B157ARG10.8200.90715.624-0.070-0.0700.0000.0000.0000.000
158B158HIS00.0770.04115.853-0.016-0.0160.0000.0000.0000.000
159B159ASP-1-0.832-0.93415.5710.0260.0260.0000.0000.0000.000
160B160ALA0-0.051-0.02515.925-0.020-0.0200.0000.0000.0000.000
161B161ASP-1-0.749-0.85415.428-0.103-0.1030.0000.0000.0000.000
162B162ARG10.7440.88910.3130.0230.0230.0000.0000.0000.000
163B163VAL00.0300.02510.7790.0100.0100.0000.0000.0000.000
164B164CYS0-0.046-0.03211.9690.0200.0200.0000.0000.0000.000
165B165GLY00.0360.01813.4330.0120.0120.0000.0000.0000.000
166B166PHE0-0.0120.00012.546-0.006-0.0060.0000.0000.0000.000
167B167GLN00.0290.00817.4900.0000.0000.0000.0000.0000.000
168B168PHE0-0.006-0.01517.507-0.010-0.0100.0000.0000.0000.000
169B169HIS0-0.007-0.00717.6020.0000.0000.0000.0000.0000.000
170B170PRO0-0.0190.01213.740-0.006-0.0060.0000.0000.0000.000
171B171GLU-1-0.781-0.90114.1320.4050.4050.0000.0000.0000.000
172B172SER0-0.0010.00215.770-0.035-0.0350.0000.0000.0000.000
173B173ILE00.0460.01119.5940.0120.0120.0000.0000.0000.000
174B174LEU0-0.040-0.01621.602-0.007-0.0070.0000.0000.0000.000
175B175THR0-0.030-0.01918.380-0.030-0.0300.0000.0000.0000.000
176B176THR00.0140.00819.0920.0370.0370.0000.0000.0000.000
177B177GLN00.0230.00418.3890.0100.0100.0000.0000.0000.000
178B178GLY00.0210.01715.8250.0330.0330.0000.0000.0000.000
179B179ALA00.0750.04012.4520.0540.0540.0000.0000.0000.000
180B180ARG10.8980.95211.536-0.278-0.2780.0000.0000.0000.000
181B181LEU00.0180.02212.3920.0380.0380.0000.0000.0000.000
182B182LEU00.0330.0327.410-0.016-0.0160.0000.0000.0000.000
183B183GLU-1-0.750-0.8526.5523.3633.3630.0000.0000.0000.000
184B184GLN0-0.054-0.0287.912-0.059-0.0590.0000.0000.0000.000
185B185THR0-0.017-0.0419.279-0.169-0.1690.0000.0000.0000.000
186B186LEU00.0290.0063.029-0.773-0.2280.171-0.157-0.5590.000
187B187ALA0-0.051-0.0045.303-0.400-0.4000.0000.0000.0000.000
188B188TRP0-0.008-0.0077.294-0.208-0.2080.0000.0000.0000.000
189B189ALA0-0.005-0.0026.094-0.119-0.1190.0000.0000.0000.000
190B190GLN0-0.029-0.0362.554-4.515-2.3901.392-1.443-2.073-0.019
191B191GLN0-0.0170.0156.314-0.066-0.0660.0000.0000.0000.000
192B192LYS10.9100.95810.0760.0640.0640.0000.0000.0000.000