Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: JQRN9

Calculation Name: 2AUA-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2AUA

Chain ID: A

ChEMBL ID:

UniProt ID: Q81DM5

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 207
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2370970.341123
FMO2-HF: Nuclear repulsion 2285896.299947
FMO2-HF: Total energy -85074.041176
FMO2-MP2: Total energy -85323.494258


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-11:LEU)


Summations of interaction energy for fragment #1(A:-11:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.8781.5590.376-0.917-2.8950.001
Interaction energy analysis for fragmet #1(A:-11:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.025 / q_NPA : -0.014
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A-9THR0-0.0220.0012.620-1.9200.6720.343-0.737-2.1980.001
4A-8GLU-1-0.885-0.9484.5550.3200.510-0.001-0.017-0.1710.000
5A-7ASN0-0.069-0.0357.443-0.190-0.1900.0000.0000.0000.000
6A-6LEU0-0.013-0.0133.355-0.3330.3220.034-0.163-0.5260.000
7A-5TYR00.0210.0197.498-0.194-0.1940.0000.0000.0000.000
8A-4PHE0-0.061-0.04311.010-0.183-0.1830.0000.0000.0000.000
9A-3GLN00.0180.02813.105-0.085-0.0850.0000.0000.0000.000
10A-2SER0-0.002-0.00513.2750.1440.1440.0000.0000.0000.000
11A-1ASN0-0.041-0.02510.1250.0230.0230.0000.0000.0000.000
12A0ALA0-0.021-0.00913.259-0.047-0.0470.0000.0000.0000.000
13A1MET00.0040.00416.846-0.012-0.0120.0000.0000.0000.000
14A2ASN0-0.014-0.02219.317-0.007-0.0070.0000.0000.0000.000
15A3GLU-1-0.903-0.92421.4930.2740.2740.0000.0000.0000.000
16A4THR0-0.059-0.02722.7310.0010.0010.0000.0000.0000.000
17A5GLU-1-0.898-0.95723.6990.1620.1620.0000.0000.0000.000
18A6PHE0-0.054-0.02827.179-0.011-0.0110.0000.0000.0000.000
19A7TYR0-0.007-0.01630.941-0.001-0.0010.0000.0000.0000.000
20A8ALA00.0110.01734.3450.0000.0000.0000.0000.0000.000
21A9TYR00.0020.00536.957-0.003-0.0030.0000.0000.0000.000
22A10HIS0-0.014-0.01439.7450.0010.0010.0000.0000.0000.000
23A11ILE00.0320.02641.713-0.002-0.0020.0000.0000.0000.000
24A12VAL0-0.0010.01643.2850.0020.0020.0000.0000.0000.000
25A13THR00.0350.00545.618-0.002-0.0020.0000.0000.0000.000
26A14ARG10.9350.97044.825-0.064-0.0640.0000.0000.0000.000
27A15LYS10.9730.96444.895-0.056-0.0560.0000.0000.0000.000
28A16LYS10.8740.93844.697-0.042-0.0420.0000.0000.0000.000
29A17MET0-0.0170.01440.1570.0020.0020.0000.0000.0000.000
30A18HIS0-0.027-0.00738.789-0.002-0.0020.0000.0000.0000.000
31A19ILE00.019-0.01037.7020.0040.0040.0000.0000.0000.000
32A20GLY00.0150.00734.728-0.002-0.0020.0000.0000.0000.000
33A21GLN0-0.033-0.00234.2930.0010.0010.0000.0000.0000.000
34A22MET00.0190.00928.8300.0000.0000.0000.0000.0000.000
35A23ILE0-0.078-0.05132.738-0.006-0.0060.0000.0000.0000.000
36A24PRO00.0230.01929.7030.0040.0040.0000.0000.0000.000
37A25PHE0-0.018-0.00930.249-0.008-0.0080.0000.0000.0000.000
38A26ASN00.0710.03124.326-0.008-0.0080.0000.0000.0000.000
39A27LYS10.8770.93623.210-0.207-0.2070.0000.0000.0000.000
40A28ASN00.0030.01027.283-0.006-0.0060.0000.0000.0000.000
41A29GLN00.0520.04429.130-0.005-0.0050.0000.0000.0000.000
42A30HIS00.0760.04633.225-0.002-0.0020.0000.0000.0000.000
43A31ASN0-0.004-0.00936.757-0.004-0.0040.0000.0000.0000.000
44A32THR0-0.044-0.04639.001-0.004-0.0040.0000.0000.0000.000
45A33LEU0-0.0120.00641.592-0.004-0.0040.0000.0000.0000.000
46A34TYR00.0340.01739.246-0.002-0.0020.0000.0000.0000.000
47A35HIS0-0.032-0.02339.750-0.002-0.0020.0000.0000.0000.000
48A36PHE0-0.074-0.03543.753-0.004-0.0040.0000.0000.0000.000
49A37PHE0-0.011-0.02745.477-0.004-0.0040.0000.0000.0000.000
50A38PHE0-0.012-0.00141.615-0.002-0.0020.0000.0000.0000.000
51A39GLU-1-0.860-0.91241.6930.0760.0760.0000.0000.0000.000
52A40ARG10.8610.96345.981-0.053-0.0530.0000.0000.0000.000
53A41GLU-1-0.863-0.93249.5200.0500.0500.0000.0000.0000.000
54A42GLN0-0.093-0.05952.6140.0010.0010.0000.0000.0000.000
55A43LEU00.0060.01755.3120.0000.0000.0000.0000.0000.000
56A44ASN0-0.055-0.03258.6710.0000.0000.0000.0000.0000.000
57A45ALA00.002-0.02061.7290.0010.0010.0000.0000.0000.000
58A46ASN0-0.069-0.03163.988-0.001-0.0010.0000.0000.0000.000
59A47GLY0-0.0230.00459.6350.0000.0000.0000.0000.0000.000
60A48GLU-1-0.900-0.94458.7700.0330.0330.0000.0000.0000.000
61A49ASP-1-0.753-0.89255.1820.0430.0430.0000.0000.0000.000
62A50GLY00.016-0.01857.318-0.001-0.0010.0000.0000.0000.000
63A51ILE0-0.017-0.00254.592-0.001-0.0010.0000.0000.0000.000
64A52GLN0-0.014-0.00357.993-0.003-0.0030.0000.0000.0000.000
65A53ILE00.0090.00860.107-0.002-0.0020.0000.0000.0000.000
66A54LEU0-0.004-0.00459.694-0.001-0.0010.0000.0000.0000.000
67A55ASN00.004-0.00559.220-0.002-0.0020.0000.0000.0000.000
68A56ASN0-0.050-0.00563.252-0.001-0.0010.0000.0000.0000.000
69A57HIS0-0.116-0.08765.843-0.002-0.0020.0000.0000.0000.000
70A58TYR0-0.0210.02365.677-0.001-0.0010.0000.0000.0000.000
71A59LYS10.9190.95167.757-0.028-0.0280.0000.0000.0000.000
72A60ASN0-0.044-0.02470.9510.0000.0000.0000.0000.0000.000
73A61ASP-1-0.922-0.96370.4030.0260.0260.0000.0000.0000.000
74A62GLU-1-0.966-0.96071.4710.0240.0240.0000.0000.0000.000
75A63LEU0-0.023-0.02365.1180.0010.0010.0000.0000.0000.000
76A64HIS00.0240.01669.6490.0010.0010.0000.0000.0000.000
77A65ILE0-0.0060.00465.3430.0000.0000.0000.0000.0000.000
78A66ASN00.004-0.01069.3680.0000.0000.0000.0000.0000.000
79A67ASN0-0.009-0.01669.0620.0010.0010.0000.0000.0000.000
80A68GLU-1-0.831-0.92263.6840.0340.0340.0000.0000.0000.000
81A69ASN00.0950.05464.5940.0020.0020.0000.0000.0000.000
82A70ALA00.0290.01864.0630.0010.0010.0000.0000.0000.000
83A71LYS10.9610.97961.565-0.034-0.0340.0000.0000.0000.000
84A72VAL0-0.0060.00559.1480.0010.0010.0000.0000.0000.000
85A73VAL00.0230.01559.2540.0020.0020.0000.0000.0000.000
86A74ILE0-0.023-0.00559.2050.0010.0010.0000.0000.0000.000
87A75SER0-0.028-0.02157.2810.0010.0010.0000.0000.0000.000
88A76TYR00.0340.02252.6290.0020.0020.0000.0000.0000.000
89A77MET0-0.0060.00454.2740.0030.0030.0000.0000.0000.000
90A78ASP-1-0.923-0.97054.2860.0440.0440.0000.0000.0000.000
91A79GLN0-0.079-0.07148.7610.0000.0000.0000.0000.0000.000
92A80THR00.0450.02249.9930.0040.0040.0000.0000.0000.000
93A81ILE0-0.037-0.00749.4700.0030.0030.0000.0000.0000.000
94A82ARG10.8870.94648.863-0.047-0.0470.0000.0000.0000.000
95A83ALA00.0560.02845.8250.0030.0030.0000.0000.0000.000
96A84ALA0-0.015-0.00244.7260.0040.0040.0000.0000.0000.000
97A85ARG10.8330.91144.856-0.061-0.0610.0000.0000.0000.000
98A86GLU-1-0.720-0.83841.7230.0780.0780.0000.0000.0000.000
99A87THR0-0.003-0.00240.5870.0050.0050.0000.0000.0000.000
100A88ILE0-0.052-0.02140.0560.0040.0040.0000.0000.0000.000
101A89VAL00.009-0.00339.1260.0020.0020.0000.0000.0000.000
102A90GLU-1-0.734-0.82133.8480.1220.1220.0000.0000.0000.000
103A91MET0-0.043-0.02735.5660.0050.0050.0000.0000.0000.000
104A92VAL0-0.032-0.02435.8610.0030.0030.0000.0000.0000.000
105A93ARG10.7990.90629.820-0.133-0.1330.0000.0000.0000.000
106A94LEU0-0.019-0.02330.4780.0080.0080.0000.0000.0000.000
107A95GLN0-0.062-0.02330.9730.0040.0040.0000.0000.0000.000
108A96GLU-1-0.880-0.94232.1470.0870.0870.0000.0000.0000.000
109A97PHE0-0.043-0.01631.428-0.004-0.0040.0000.0000.0000.000
110A98PRO00.0020.00727.1820.0010.0010.0000.0000.0000.000
111A99GLU-1-0.891-0.95226.7870.1530.1530.0000.0000.0000.000
112A100TYR0-0.041-0.00527.8130.0020.0020.0000.0000.0000.000
113A101PRO0-0.006-0.00430.8320.0030.0030.0000.0000.0000.000
114A102SER00.012-0.00931.998-0.009-0.0090.0000.0000.0000.000
115A103ARG10.8820.90034.135-0.080-0.0800.0000.0000.0000.000
116A104LEU0-0.0290.00536.545-0.006-0.0060.0000.0000.0000.000
117A105SER0-0.055-0.03932.7190.0030.0030.0000.0000.0000.000
118A106CYS0-0.0280.00733.3470.0060.0060.0000.0000.0000.000
119A107LEU0-0.0080.01435.337-0.007-0.0070.0000.0000.0000.000
120A108TYR0-0.007-0.01737.2890.0020.0020.0000.0000.0000.000
121A109ALA0-0.024-0.01238.102-0.003-0.0030.0000.0000.0000.000
122A110ALA00.0090.00940.230-0.001-0.0010.0000.0000.0000.000
123A111LYS10.9570.98038.356-0.069-0.0690.0000.0000.0000.000
124A112SER00.004-0.01339.4060.0010.0010.0000.0000.0000.000
125A113TYR00.0390.01441.9480.0000.0000.0000.0000.0000.000
126A114GLU-1-0.930-0.96444.4920.0450.0450.0000.0000.0000.000
127A115ASP-1-0.866-0.95044.0700.0570.0570.0000.0000.0000.000
128A116ALA0-0.022-0.01144.2260.0000.0000.0000.0000.0000.000
129A117LEU00.0110.00246.089-0.001-0.0010.0000.0000.0000.000
130A118LYS10.9390.97749.138-0.049-0.0490.0000.0000.0000.000
131A119TRP00.006-0.00344.809-0.003-0.0030.0000.0000.0000.000
132A120LYS10.8270.92049.399-0.044-0.0440.0000.0000.0000.000
133A121ALA00.0070.00651.174-0.001-0.0010.0000.0000.0000.000
134A122LEU0-0.034-0.00951.119-0.002-0.0020.0000.0000.0000.000
135A123PHE0-0.019-0.03147.6840.0000.0000.0000.0000.0000.000
136A124ASP-1-0.808-0.89053.5780.0400.0400.0000.0000.0000.000
137A125SER0-0.121-0.04556.588-0.001-0.0010.0000.0000.0000.000
138A126TYR0-0.042-0.03355.872-0.001-0.0010.0000.0000.0000.000
139A127ASN0-0.090-0.04557.992-0.001-0.0010.0000.0000.0000.000
140A128ARG10.8970.96849.068-0.051-0.0510.0000.0000.0000.000
141A129GLU-1-0.868-0.93353.7410.0420.0420.0000.0000.0000.000
142A130VAL0-0.033-0.01949.3140.0030.0030.0000.0000.0000.000
143A131LEU0-0.082-0.04348.150-0.002-0.0020.0000.0000.0000.000
144A132GLN0-0.021-0.03645.2420.0010.0010.0000.0000.0000.000
145A133ILE0-0.0140.01544.6980.0020.0020.0000.0000.0000.000
146A134VAL0-0.027-0.01040.688-0.001-0.0010.0000.0000.0000.000
147A135LYS10.9430.97936.872-0.067-0.0670.0000.0000.0000.000
148A136LEU0-0.012-0.01635.0610.0000.0000.0000.0000.0000.000
149A137ARG10.9160.95826.227-0.131-0.1310.0000.0000.0000.000
150A138VAL0-0.006-0.00129.2940.0020.0020.0000.0000.0000.000
151A139ILE00.0230.01523.3160.0000.0000.0000.0000.0000.000
152A140GLY00.022-0.00525.8710.0090.0090.0000.0000.0000.000
153A141SER0-0.0150.00826.634-0.001-0.0010.0000.0000.0000.000
154A142SER00.019-0.01728.823-0.006-0.0060.0000.0000.0000.000
155A143PHE00.0240.01732.1610.0040.0040.0000.0000.0000.000
156A144GLU-1-0.905-0.94134.8880.0780.0780.0000.0000.0000.000
157A145GLY00.0360.02938.254-0.001-0.0010.0000.0000.0000.000
158A146ASP-1-0.688-0.84440.7650.0540.0540.0000.0000.0000.000
159A147GLY00.0470.01344.4280.0000.0000.0000.0000.0000.000
160A148ASN0-0.089-0.04646.122-0.002-0.0020.0000.0000.0000.000
161A149LEU0-0.099-0.05743.930-0.002-0.0020.0000.0000.0000.000
162A150LEU0-0.048-0.00242.4880.0010.0010.0000.0000.0000.000
163A151PRO0-0.034-0.01944.916-0.003-0.0030.0000.0000.0000.000
164A152LYS10.9340.98647.972-0.051-0.0510.0000.0000.0000.000
165A153GLU-1-0.963-0.99051.2130.0510.0510.0000.0000.0000.000
166A154ASP-1-0.853-0.93253.2530.0450.0450.0000.0000.0000.000
167A155GLY00.0240.00253.8130.0020.0020.0000.0000.0000.000
168A156ILE0-0.051-0.00550.924-0.001-0.0010.0000.0000.0000.000
169A157PRO00.030-0.00151.8020.0020.0020.0000.0000.0000.000
170A158PHE00.1090.02946.2620.0010.0010.0000.0000.0000.000
171A159SER00.0020.00646.3950.0020.0020.0000.0000.0000.000
172A160GLN00.0610.02546.8290.0010.0010.0000.0000.0000.000
173A161LYS10.8490.94146.909-0.051-0.0510.0000.0000.0000.000
174A162ILE00.0260.01241.5920.0020.0020.0000.0000.0000.000
175A163GLU-1-0.991-0.99042.8510.0560.0560.0000.0000.0000.000
176A164GLN0-0.002-0.01844.2530.0020.0020.0000.0000.0000.000
177A165ALA00.0550.03341.0460.0010.0010.0000.0000.0000.000
178A166ARG10.8590.93139.318-0.072-0.0720.0000.0000.0000.000
179A167LYS10.8700.92240.240-0.055-0.0550.0000.0000.0000.000
180A168TYR00.0360.02338.9540.0010.0010.0000.0000.0000.000
181A169TRP0-0.004-0.01535.5660.0020.0020.0000.0000.0000.000
182A170LYS10.8950.95037.086-0.068-0.0680.0000.0000.0000.000
183A171GLY00.0400.04538.7100.0010.0010.0000.0000.0000.000
184A172ASN0-0.089-0.01940.3450.0000.0000.0000.0000.0000.000
185A173ILE0-0.022-0.01742.5860.0000.0000.0000.0000.0000.000
186A174ARG10.7540.85345.417-0.052-0.0520.0000.0000.0000.000
187A175ASN0-0.028-0.03144.191-0.003-0.0030.0000.0000.0000.000
188A176GLU-1-0.786-0.90045.6560.0540.0540.0000.0000.0000.000
189A177LEU0-0.014-0.00946.283-0.001-0.0010.0000.0000.0000.000
190A178PRO0-0.0060.01441.3330.0000.0000.0000.0000.0000.000
191A179GLU-1-0.911-0.96341.7520.0700.0700.0000.0000.0000.000
192A180LEU0-0.045-0.02535.8180.0020.0020.0000.0000.0000.000
193A181LEU0-0.011-0.01135.432-0.001-0.0010.0000.0000.0000.000
194A182ILE00.0130.00233.0720.0040.0040.0000.0000.0000.000
195A183ASN00.0410.01728.821-0.003-0.0030.0000.0000.0000.000
196A184GLY00.0330.00027.0550.0040.0040.0000.0000.0000.000
197A185GLU-1-0.915-0.97725.4950.1620.1620.0000.0000.0000.000
198A186ILE0-0.026-0.00628.237-0.004-0.0040.0000.0000.0000.000
199A187GLU-1-0.848-0.93531.3290.0990.0990.0000.0000.0000.000
200A188VAL0-0.0320.00033.054-0.003-0.0030.0000.0000.0000.000
201A189VAL0-0.004-0.00833.606-0.002-0.0020.0000.0000.0000.000
202A190GLU-1-0.951-0.98636.6000.0520.0520.0000.0000.0000.000
203A191ILE0-0.022-0.00440.3050.0020.0020.0000.0000.0000.000
204A192ILE0-0.031-0.00742.415-0.002-0.0020.0000.0000.0000.000
205A193ASP-1-0.835-0.93445.4860.0450.0450.0000.0000.0000.000
206A194ASP-1-0.799-0.89448.3140.0480.0480.0000.0000.0000.000
207A195PHE00.0210.02149.853-0.003-0.0030.0000.0000.0000.000