Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

tag_button

FMODB ID: L7L29

Calculation Name: 2FI7-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2FI7

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HXJ2

Base Structure: X-ray

Registration Date: 2023-09-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 223
LigandCharge DLY=1,DAR=1
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2599461.364089
FMO2-HF: Nuclear repulsion 2510769.7737
FMO2-HF: Total energy -88691.590389
FMO2-MP2: Total energy -88954.888199


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:30:ASP)


Summations of interaction energy for fragment #1(A:30:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-32.699-29.13916.772-6.846-13.4890.13
Interaction energy analysis for fragmet #1(A:30:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.739 / q_NPA : -0.883
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A32GLY00.0560.0361.989-25.436-23.52512.535-7.768-6.6790.084
4A33ARG10.7870.8853.021-49.327-53.4550.0655.305-1.2420.010
5A34ASP-1-0.878-0.9542.28438.07440.9133.753-3.058-3.5350.020
6A35GLU-1-0.896-0.9262.77743.19045.9760.418-1.268-1.9360.016
7A36ALA0-0.018-0.0214.367-12.720-12.5680.001-0.057-0.0970.000
8A37ARG10.8190.9266.078-45.450-45.4500.0000.0000.0000.000
9A38ASP-1-0.766-0.8927.06132.90732.9070.0000.0000.0000.000
10A39ALA0-0.0090.0038.653-3.934-3.9340.0000.0000.0000.000
11A40TYR0-0.021-0.03210.629-4.148-4.1480.0000.0000.0000.000
12A41ILE0-0.0080.01011.533-2.555-2.5550.0000.0000.0000.000
13A42GLN00.0100.01212.776-3.093-3.0930.0000.0000.0000.000
14A43LEU00.0050.01514.837-1.512-1.5120.0000.0000.0000.000
15A44GLY0-0.002-0.00916.403-1.287-1.2870.0000.0000.0000.000
16A45LEU0-0.019-0.02016.263-1.191-1.1910.0000.0000.0000.000
17A46GLY00.0290.02418.943-0.845-0.8450.0000.0000.0000.000
18A47TYR0-0.062-0.04220.511-0.729-0.7290.0000.0000.0000.000
19A48LEU00.0110.00322.178-0.667-0.6670.0000.0000.0000.000
20A49GLN0-0.040-0.01523.272-0.623-0.6230.0000.0000.0000.000
21A50ARG10.8650.92424.151-12.732-12.7320.0000.0000.0000.000
22A51GLY00.0330.03526.849-0.468-0.4680.0000.0000.0000.000
23A52ASN0-0.076-0.02325.800-0.045-0.0450.0000.0000.0000.000
24A53THR00.0700.00925.5570.5800.5800.0000.0000.0000.000
25A54GLU-1-0.752-0.86125.21512.08512.0850.0000.0000.0000.000
26A55GLN0-0.050-0.02023.327-0.088-0.0880.0000.0000.0000.000
27A56ALA0-0.004-0.01021.3150.7340.7340.0000.0000.0000.000
28A57LYS10.8170.91420.119-10.655-10.6550.0000.0000.0000.000
29A58VAL00.0180.01219.4790.7610.7610.0000.0000.0000.000
30A59PRO0-0.023-0.01616.5450.8450.8450.0000.0000.0000.000
31A60LEU00.0610.02115.4171.4131.4130.0000.0000.0000.000
32A61ARG10.9320.97116.107-13.604-13.6040.0000.0000.0000.000
33A62LYS10.9560.99014.171-17.908-17.9080.0000.0000.0000.000
34A63ALA00.0110.00611.4951.6101.6100.0000.0000.0000.000
35A64LEU0-0.038-0.02611.8061.2301.2300.0000.0000.0000.000
36A65GLU-1-0.962-0.97614.15518.44218.4420.0000.0000.0000.000
37A66ILE0-0.093-0.0307.6180.6600.6600.0000.0000.0000.000
38A67ASP-1-0.800-0.8978.75229.26929.2690.0000.0000.0000.000
39A68PRO0-0.0030.00610.665-1.251-1.2510.0000.0000.0000.000
40A69SER0-0.089-0.05111.766-1.910-1.9100.0000.0000.0000.000
41A70SER00.0300.01911.379-0.652-0.6520.0000.0000.0000.000
42A71ALA00.0560.01212.798-1.451-1.4510.0000.0000.0000.000
43A72ASP-1-0.886-0.94912.92119.81319.8130.0000.0000.0000.000
44A73ALA00.003-0.01013.342-0.887-0.8870.0000.0000.0000.000
45A74HIS10.7720.86515.196-18.043-18.0430.0000.0000.0000.000
46A75ALA0-0.020-0.00417.888-0.977-0.9770.0000.0000.0000.000
47A76ALA00.0140.00217.757-0.845-0.8450.0000.0000.0000.000
48A77LEU0-0.029-0.01219.329-0.703-0.7030.0000.0000.0000.000
49A78ALA00.0110.00121.082-0.718-0.7180.0000.0000.0000.000
50A79VAL00.0030.01022.858-0.620-0.6200.0000.0000.0000.000
51A80VAL0-0.0130.01722.606-0.514-0.5140.0000.0000.0000.000
52A81PHE00.023-0.00124.172-0.375-0.3750.0000.0000.0000.000
53A82GLN00.0010.00227.313-0.022-0.0220.0000.0000.0000.000
54A83THR0-0.080-0.05427.463-0.393-0.3930.0000.0000.0000.000
55A84GLU-1-0.905-0.96328.38310.82310.8230.0000.0000.0000.000
56A85MET0-0.034-0.01231.388-0.396-0.3960.0000.0000.0000.000
57A86GLU-1-0.902-0.93330.2419.4089.4080.0000.0000.0000.000
58A87PRO0-0.001-0.01630.5960.3700.3700.0000.0000.0000.000
59A88LYS10.9500.96031.011-9.524-9.5240.0000.0000.0000.000
60A89LEU00.0540.02927.7980.2330.2330.0000.0000.0000.000
61A90ALA00.0160.00626.5280.4850.4850.0000.0000.0000.000
62A91ASP-1-0.801-0.86326.34310.73310.7330.0000.0000.0000.000
63A92GLU-1-0.949-0.97726.38011.17311.1730.0000.0000.0000.000
64A93GLU-1-0.833-0.89820.96315.01115.0110.0000.0000.0000.000
65A94TYR00.030-0.00522.0800.8410.8410.0000.0000.0000.000
66A95ARG10.8450.91723.208-10.174-10.1740.0000.0000.0000.000
67A96LYS10.9200.95920.041-13.058-13.0580.0000.0000.0000.000
68A97ALA0-0.022-0.01018.4900.6570.6570.0000.0000.0000.000
69A98LEU0-0.052-0.02818.7710.4300.4300.0000.0000.0000.000
70A99ALA0-0.053-0.00919.832-0.237-0.2370.0000.0000.0000.000
71A100SER0-0.068-0.00414.4620.1860.1860.0000.0000.0000.000
72A101ASP-1-0.787-0.91116.97915.41815.4180.0000.0000.0000.000
73A102SER0-0.048-0.03418.787-0.025-0.0250.0000.0000.0000.000
74A103ARG10.8910.94121.319-12.606-12.6060.0000.0000.0000.000
75A104ASN00.0610.03517.382-0.436-0.4360.0000.0000.0000.000
76A105ALA00.0790.04420.949-0.354-0.3540.0000.0000.0000.000
77A106ARG10.9450.97917.962-17.024-17.0240.0000.0000.0000.000
78A107VAL0-0.040-0.02219.353-0.288-0.2880.0000.0000.0000.000
79A108LEU00.0090.00022.382-0.543-0.5430.0000.0000.0000.000
80A109ASN00.011-0.00225.503-0.869-0.8690.0000.0000.0000.000
81A110ASN0-0.0060.00322.718-0.857-0.8570.0000.0000.0000.000
82A111TYR0-0.055-0.04725.918-0.348-0.3480.0000.0000.0000.000
83A112GLY00.0260.00227.511-0.405-0.4050.0000.0000.0000.000
84A113GLY00.0130.00729.784-0.405-0.4050.0000.0000.0000.000
85A114PHE00.0210.02929.279-0.314-0.3140.0000.0000.0000.000
86A115LEU0-0.025-0.02030.893-0.355-0.3550.0000.0000.0000.000
87A116TYR0-0.039-0.01533.549-0.438-0.4380.0000.0000.0000.000
88A117GLU-1-0.887-0.94832.5399.4409.4400.0000.0000.0000.000
89A118GLN0-0.098-0.04034.049-0.163-0.1630.0000.0000.0000.000
90A119LYS10.9070.94236.869-7.740-7.7400.0000.0000.0000.000
91A120ARG10.8130.90732.220-9.494-9.4940.0000.0000.0000.000
92A121TYR00.030-0.00936.7480.2490.2490.0000.0000.0000.000
93A122GLU-1-0.901-0.95437.9507.7407.7400.0000.0000.0000.000
94A123GLU-1-0.850-0.91333.5559.2069.2060.0000.0000.0000.000
95A124ALA00.002-0.00533.2410.2950.2950.0000.0000.0000.000
96A125TYR0-0.005-0.02633.4130.1860.1860.0000.0000.0000.000
97A126GLN00.0220.01233.1850.3320.3320.0000.0000.0000.000
98A127ARG10.9230.97027.053-10.510-10.5100.0000.0000.0000.000
99A128LEU00.0290.01629.4910.3410.3410.0000.0000.0000.000
100A129LEU00.0030.00231.3830.1020.1020.0000.0000.0000.000
101A130GLU-1-0.856-0.92027.35911.21511.2150.0000.0000.0000.000
102A131ALA0-0.010-0.00326.8090.2760.2760.0000.0000.0000.000
103A132SER0-0.126-0.06427.7530.1150.1150.0000.0000.0000.000
104A133GLN0-0.040-0.03328.318-0.143-0.1430.0000.0000.0000.000
105A134ASP-1-0.811-0.89023.02113.40313.4030.0000.0000.0000.000
106A135THR0-0.094-0.08626.3190.0300.0300.0000.0000.0000.000
107A136LEU00.0260.01222.484-0.264-0.2640.0000.0000.0000.000
108A137TYR0-0.0040.01222.3900.2590.2590.0000.0000.0000.000
109A138PRO00.023-0.00222.015-0.524-0.5240.0000.0000.0000.000
110A139GLU-1-0.918-0.95024.64711.53411.5340.0000.0000.0000.000
111A140ARG10.8850.96127.030-10.586-10.5860.0000.0000.0000.000
112A141SER0-0.020-0.01328.974-0.194-0.1940.0000.0000.0000.000
113A142ARG11.0201.01225.419-11.872-11.8720.0000.0000.0000.000
114A143VAL00.0000.02028.430-0.142-0.1420.0000.0000.0000.000
115A144PHE0-0.040-0.03831.130-0.298-0.2980.0000.0000.0000.000
116A145GLU-1-0.903-0.95234.1078.7898.7890.0000.0000.0000.000
117A146ASN00.0210.00231.008-0.445-0.4450.0000.0000.0000.000
118A147LEU0-0.053-0.01934.087-0.240-0.2400.0000.0000.0000.000
119A148GLY00.0250.02536.646-0.257-0.2570.0000.0000.0000.000
120A149LEU00.0380.01236.329-0.262-0.2620.0000.0000.0000.000
121A150VAL00.0110.00036.138-0.191-0.1910.0000.0000.0000.000
122A151SER0-0.012-0.01839.352-0.203-0.2030.0000.0000.0000.000
123A152LEU0-0.028-0.00842.094-0.231-0.2310.0000.0000.0000.000
124A153GLN0-0.023-0.00341.763-0.298-0.2980.0000.0000.0000.000
125A154MET0-0.088-0.01941.181-0.079-0.0790.0000.0000.0000.000
126A155LYS10.9240.95744.826-6.542-6.5420.0000.0000.0000.000
127A156LYS10.9460.98243.425-7.325-7.3250.0000.0000.0000.000
128A157PRO00.0660.02545.8930.1470.1470.0000.0000.0000.000
129A158ALA00.0660.03046.7590.0920.0920.0000.0000.0000.000
130A159GLN00.0070.00041.973-0.053-0.0530.0000.0000.0000.000
131A160ALA0-0.014-0.02242.2920.1760.1760.0000.0000.0000.000
132A161LYS10.9110.94942.409-6.278-6.2780.0000.0000.0000.000
133A162GLU-1-0.888-0.92441.8227.7587.7580.0000.0000.0000.000
134A163TYR0-0.008-0.00537.6960.1680.1680.0000.0000.0000.000
135A164PHE00.0540.02238.5750.2300.2300.0000.0000.0000.000
136A165GLU-1-0.919-0.95540.0417.2007.2000.0000.0000.0000.000
137A166LYS10.8440.92137.048-8.160-8.1600.0000.0000.0000.000
138A167SER00.0120.00035.5850.2430.2430.0000.0000.0000.000
139A168LEU00.0210.01036.1600.1410.1410.0000.0000.0000.000
140A169ARG10.8620.92638.240-8.032-8.0320.0000.0000.0000.000
141A170LEU0-0.073-0.02432.4430.0630.0630.0000.0000.0000.000
142A171ASN0-0.006-0.00432.6830.0590.0590.0000.0000.0000.000
143A172ARG11.0050.99935.344-7.818-7.8180.0000.0000.0000.000
144A173ASN00.0060.02135.497-0.448-0.4480.0000.0000.0000.000
145A174GLN00.0360.01334.6810.2310.2310.0000.0000.0000.000
146A175PRO00.0830.04037.832-0.159-0.1590.0000.0000.0000.000
147A176SER00.0210.00437.645-0.181-0.1810.0000.0000.0000.000
148A177VAL00.0400.02237.246-0.130-0.1300.0000.0000.0000.000
149A178ALA0-0.002-0.00140.336-0.166-0.1660.0000.0000.0000.000
150A179LEU0-0.014-0.00543.255-0.213-0.2130.0000.0000.0000.000
151A180GLU-1-0.799-0.86441.6087.1397.1390.0000.0000.0000.000
152A181MET0-0.0370.00243.683-0.133-0.1330.0000.0000.0000.000
153A182ALA00.0050.00546.056-0.171-0.1710.0000.0000.0000.000
154A183ASP-1-0.872-0.94648.1336.2586.2580.0000.0000.0000.000
155A184LEU0-0.054-0.03445.890-0.140-0.1400.0000.0000.0000.000
156A185LEU00.0270.00849.172-0.106-0.1060.0000.0000.0000.000
157A186TYR0-0.014-0.00751.678-0.168-0.1680.0000.0000.0000.000
158A187LYS10.8780.93550.073-6.473-6.4730.0000.0000.0000.000
159A188GLU-1-0.925-0.94951.3516.1526.1520.0000.0000.0000.000
160A189ARG10.8710.93755.562-5.366-5.3660.0000.0000.0000.000
161A190GLU-1-0.901-0.93554.4335.8335.8330.0000.0000.0000.000
162A191TYR00.029-0.01755.0170.0790.0790.0000.0000.0000.000
163A192VAL00.0160.02155.5930.0660.0660.0000.0000.0000.000
164A193PRO00.0300.02151.6640.0740.0740.0000.0000.0000.000
165A194ALA00.0270.01251.0280.1540.1540.0000.0000.0000.000
166A195ARG10.9690.96951.138-5.554-5.5540.0000.0000.0000.000
167A196GLN0-0.0010.02049.401-0.053-0.0530.0000.0000.0000.000
168A197TYR0-0.030-0.02844.5600.2150.2150.0000.0000.0000.000
169A198TYR00.0090.00446.9430.1610.1610.0000.0000.0000.000
170A199ASP-1-0.877-0.93848.4346.2446.2440.0000.0000.0000.000
171A200LEU0-0.047-0.01242.4820.0790.0790.0000.0000.0000.000
172A201PHE0-0.055-0.03843.6820.1710.1710.0000.0000.0000.000
173A202ALA00.0010.00044.7090.1040.1040.0000.0000.0000.000
174A203GLN0-0.065-0.02744.6330.0760.0760.0000.0000.0000.000
175A204GLY0-0.027-0.01041.8260.1530.1530.0000.0000.0000.000
176A205GLY0-0.061-0.02242.0780.1090.1090.0000.0000.0000.000
177A206GLY00.026-0.00443.3450.1100.1100.0000.0000.0000.000
178A207GLN0-0.012-0.00244.409-0.063-0.0630.0000.0000.0000.000
179A208ASN0-0.015-0.01544.420-0.044-0.0440.0000.0000.0000.000
180A209ALA00.0550.02247.739-0.085-0.0850.0000.0000.0000.000
181A210ARG10.8340.89344.140-7.107-7.1070.0000.0000.0000.000
182A211SER00.002-0.00947.230-0.046-0.0460.0000.0000.0000.000
183A212LEU0-0.038-0.00249.346-0.100-0.1000.0000.0000.0000.000
184A213LEU00.0040.01452.436-0.117-0.1170.0000.0000.0000.000
185A214LEU0-0.0120.00049.906-0.109-0.1090.0000.0000.0000.000
186A215GLY00.0520.01652.838-0.075-0.0750.0000.0000.0000.000
187A216ILE0-0.026-0.00953.985-0.108-0.1080.0000.0000.0000.000
188A217ARG10.8050.91056.056-5.726-5.7260.0000.0000.0000.000
189A218LEU0-0.0130.00653.271-0.085-0.0850.0000.0000.0000.000
190A219ALA00.0180.00957.242-0.050-0.0500.0000.0000.0000.000
191A220LYS10.8250.91059.174-5.177-5.1770.0000.0000.0000.000
192A221VAL0-0.085-0.02459.457-0.084-0.0840.0000.0000.0000.000
193A222PHE0-0.001-0.00658.111-0.030-0.0300.0000.0000.0000.000
194A223GLU-1-0.953-0.97662.4834.8614.8610.0000.0000.0000.000
195A224ASP-1-0.801-0.87359.3155.4165.4160.0000.0000.0000.000
196A225ARG10.9130.93961.839-4.859-4.8590.0000.0000.0000.000
197A226ASP-1-0.867-0.92661.8935.0465.0460.0000.0000.0000.000
198A227THR0-0.033-0.04856.1360.0560.0560.0000.0000.0000.000
199A228ALA0-0.038-0.02058.3580.0700.0700.0000.0000.0000.000
200A229ALA0-0.039-0.01659.9890.0230.0230.0000.0000.0000.000
201A230SER0-0.008-0.00557.2830.0430.0430.0000.0000.0000.000
202A231TYR00.0270.03052.4730.1050.1050.0000.0000.0000.000
203A232GLY00.0410.01856.785-0.028-0.0280.0000.0000.0000.000
204A233LEU0-0.043-0.03751.546-0.015-0.0150.0000.0000.0000.000
205A234GLN00.0640.02153.6940.1900.1900.0000.0000.0000.000
206A235LEU0-0.0180.01155.6340.0170.0170.0000.0000.0000.000
207A236DLY10.9680.96157.481-5.496-5.4960.0000.0000.0000.000
208A237DAR10.9710.99149.521-6.440-6.4400.0000.0000.0000.000
209A238LEU0-0.107-0.05651.4900.1160.1160.0000.0000.0000.000
210A239TYR00.0010.00548.4040.1630.1630.0000.0000.0000.000
211A240PRO00.0540.03653.753-0.052-0.0520.0000.0000.0000.000
212A241GLY00.0070.00155.596-0.103-0.1030.0000.0000.0000.000
213A242SER0-0.046-0.01553.0130.0500.0500.0000.0000.0000.000
214A243LEU00.0700.02754.181-0.105-0.1050.0000.0000.0000.000
215A244GLU-1-0.820-0.92552.2586.0796.0790.0000.0000.0000.000
216A245TYR0-0.062-0.04255.518-0.126-0.1260.0000.0000.0000.000
217A246GLN00.0040.00557.913-0.183-0.1830.0000.0000.0000.000
218A247GLU-1-0.883-0.96056.6765.5835.5830.0000.0000.0000.000
219A248PHE0-0.031-0.00958.920-0.074-0.0740.0000.0000.0000.000
220A249GLN0-0.048-0.04960.771-0.035-0.0350.0000.0000.0000.000
221A250ALA0-0.0270.00263.694-0.098-0.0980.0000.0000.0000.000
222A251GLU-1-0.836-0.91661.2875.2725.2720.0000.0000.0000.000
223A252LYS10.8820.96764.607-4.908-4.9080.0000.0000.0000.000