Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: L7LQ9

Calculation Name: 1IUH-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1IUH

Chain ID: A

ChEMBL ID:

UniProt ID: Q5SHB1

Base Structure: X-ray

Registration Date: 2023-09-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 183
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1994122.689963
FMO2-HF: Nuclear repulsion 1923289.829524
FMO2-HF: Total energy -70832.860439
FMO2-MP2: Total energy -71047.078734


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-43.58-37.45528.142-12.726-21.538-0.055
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.006 / q_NPA : 0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3LEU00.027-0.0012.587-1.0763.7711.182-2.380-3.6490.016
4A4PHE0-0.070-0.0315.065-0.795-0.766-0.001-0.004-0.0230.000
5A5TYR00.1000.0538.7680.4040.4040.0000.0000.0000.000
6A6ALA0-0.071-0.04611.595-0.159-0.1590.0000.0000.0000.000
7A7VAL00.0860.06214.1150.0590.0590.0000.0000.0000.000
8A8PHE0-0.043-0.03512.700-0.022-0.0220.0000.0000.0000.000
9A9LEU0-0.018-0.01218.023-0.039-0.0390.0000.0000.0000.000
10A10PRO00.0450.04221.6630.0370.0370.0000.0000.0000.000
11A11GLU-1-0.905-0.96824.6760.2390.2390.0000.0000.0000.000
12A12GLU-1-0.805-0.92326.8550.2000.2000.0000.0000.0000.000
13A13VAL0-0.0080.01024.837-0.015-0.0150.0000.0000.0000.000
14A14ARG10.8620.92721.610-0.345-0.3450.0000.0000.0000.000
15A15ALA00.0350.01625.380-0.007-0.0070.0000.0000.0000.000
16A16ALA00.0970.06428.826-0.012-0.0120.0000.0000.0000.000
17A17LEU0-0.039-0.03323.699-0.015-0.0150.0000.0000.0000.000
18A18VAL0-0.020-0.01425.686-0.006-0.0060.0000.0000.0000.000
19A19GLU-1-0.931-0.95427.8110.1310.1310.0000.0000.0000.000
20A20ALA0-0.041-0.02528.743-0.014-0.0140.0000.0000.0000.000
21A21GLN0-0.080-0.07923.286-0.008-0.0080.0000.0000.0000.000
22A22THR00.0240.03728.704-0.008-0.0080.0000.0000.0000.000
23A23LYS10.8830.93431.978-0.084-0.0840.0000.0000.0000.000
24A24VAL00.003-0.01527.999-0.010-0.0100.0000.0000.0000.000
25A25ARG10.9570.99230.776-0.136-0.1360.0000.0000.0000.000
26A26PRO0-0.0050.00531.7770.0000.0000.0000.0000.0000.000
27A27PHE0-0.010-0.00631.618-0.008-0.0080.0000.0000.0000.000
28A28ARG11.0431.02029.930-0.060-0.0600.0000.0000.0000.000
29A29GLY00.0120.01328.4110.0030.0030.0000.0000.0000.000
30A30TRP0-0.049-0.04625.182-0.009-0.0090.0000.0000.0000.000
31A31LYS10.9100.95819.814-0.218-0.2180.0000.0000.0000.000
32A32PRO00.0140.01122.738-0.004-0.0040.0000.0000.0000.000
33A33VAL0-0.033-0.01118.2000.0170.0170.0000.0000.0000.000
34A34PRO00.0440.02718.287-0.019-0.0190.0000.0000.0000.000
35A35PRO00.1090.05419.6700.0260.0260.0000.0000.0000.000
36A36HIS00.0370.01018.2200.0030.0030.0000.0000.0000.000
37A37GLN0-0.055-0.02913.928-0.017-0.0170.0000.0000.0000.000
38A38LEU0-0.044-0.00416.470-0.013-0.0130.0000.0000.0000.000
39A39HIS10.8500.91613.820-0.362-0.3620.0000.0000.0000.000
40A40LEU00.0080.02017.715-0.051-0.0510.0000.0000.0000.000
41A41THR0-0.076-0.04913.0320.0770.0770.0000.0000.0000.000
42A42LEU00.0230.00914.764-0.051-0.0510.0000.0000.0000.000
43A43LEU00.0400.02012.302-0.042-0.0420.0000.0000.0000.000
44A44PHE0-0.121-0.0549.0170.0850.0850.0000.0000.0000.000
45A45LEU00.0800.0366.9400.0730.0730.0000.0000.0000.000
46A46GLY0-0.030-0.0027.834-0.279-0.2790.0000.0000.0000.000
47A47GLU-1-0.949-0.9832.096-19.169-16.9164.278-3.346-3.185-0.043
48A48ARG10.8540.9142.9585.0106.2250.022-0.464-0.7730.000
49A49PRO00.0580.0362.053-12.463-11.5473.966-2.608-2.274-0.033
50A50GLU-1-0.938-0.9832.884-1.3190.2630.277-0.432-1.427-0.004
51A51GLU-1-0.958-0.9804.173-0.0390.0930.000-0.029-0.1030.000
52A52GLU-1-0.631-0.7926.601-2.457-2.4570.0000.0000.0000.000
53A53LEU0-0.086-0.0462.9190.608-0.0133.797-0.812-2.363-0.002
54A54PRO00.0240.0036.5900.1330.1330.0000.0000.0000.000
55A55ASP-1-0.807-0.88710.075-0.268-0.2680.0000.0000.0000.000
56A56TYR0-0.037-0.0566.2350.2870.2870.0000.0000.0000.000
57A57LEU0-0.052-0.0188.0350.0870.0870.0000.0000.0000.000
58A58ALA00.0210.00410.982-0.066-0.0660.0000.0000.0000.000
59A59LEU0-0.056-0.00112.862-0.028-0.0280.0000.0000.0000.000
60A60GLY00.015-0.00113.428-0.029-0.0290.0000.0000.0000.000
61A61HIS0-0.012-0.00713.448-0.115-0.1150.0000.0000.0000.000
62A62ARG10.9300.94917.080-0.010-0.0100.0000.0000.0000.000
63A63LEU00.0090.01017.299-0.018-0.0180.0000.0000.0000.000
64A64ALA0-0.046-0.01518.449-0.014-0.0140.0000.0000.0000.000
65A65ARG10.9530.96620.318-0.123-0.1230.0000.0000.0000.000
66A66LEU0-0.031-0.00222.266-0.019-0.0190.0000.0000.0000.000
67A67GLU-1-0.816-0.87923.0340.0420.0420.0000.0000.0000.000
68A68ALA00.0440.03324.9110.0250.0250.0000.0000.0000.000
69A69PRO0-0.001-0.00525.646-0.001-0.0010.0000.0000.0000.000
70A70PHE00.0000.01922.733-0.021-0.0210.0000.0000.0000.000
71A71ARG10.9310.97327.326-0.084-0.0840.0000.0000.0000.000
72A72ALA0-0.0010.01225.987-0.014-0.0140.0000.0000.0000.000
73A73ARG10.9370.97628.062-0.073-0.0730.0000.0000.0000.000
74A74LEU0-0.020-0.00425.967-0.006-0.0060.0000.0000.0000.000
75A75ARG10.9150.93529.143-0.036-0.0360.0000.0000.0000.000
76A76GLY00.0480.03731.167-0.010-0.0100.0000.0000.0000.000
77A77THR00.0350.03228.8820.0070.0070.0000.0000.0000.000
78A78GLY0-0.067-0.04328.382-0.011-0.0110.0000.0000.0000.000
79A79TYR00.0230.01527.2180.0110.0110.0000.0000.0000.000
80A80PHE00.0140.04022.742-0.013-0.0130.0000.0000.0000.000
81A81PRO00.0670.00925.4210.0080.0080.0000.0000.0000.000
82A82ASN00.011-0.01527.6500.0180.0180.0000.0000.0000.000
83A83GLU-1-0.848-0.89930.726-0.056-0.0560.0000.0000.0000.000
84A84GLY00.0650.03631.653-0.010-0.0100.0000.0000.0000.000
85A85THR0-0.015-0.01128.6840.0130.0130.0000.0000.0000.000
86A86PRO0-0.0110.02527.829-0.012-0.0120.0000.0000.0000.000
87A87ARG10.9320.94817.7420.1850.1850.0000.0000.0000.000
88A88VAL0-0.098-0.08020.5510.0160.0160.0000.0000.0000.000
89A89TRP00.0930.06423.729-0.006-0.0060.0000.0000.0000.000
90A90PHE0-0.040-0.02522.9850.0160.0160.0000.0000.0000.000
91A91ALA00.0940.04524.420-0.014-0.0140.0000.0000.0000.000
92A92LYS10.8840.93024.8520.0020.0020.0000.0000.0000.000
93A93ALA00.0290.03124.4680.0120.0120.0000.0000.0000.000
94A94GLU-1-0.949-0.99226.5310.0190.0190.0000.0000.0000.000
95A95ALA00.0800.01226.4940.0140.0140.0000.0000.0000.000
96A96GLU-1-0.833-0.93126.440-0.003-0.0030.0000.0000.0000.000
97A97GLY00.0430.04225.505-0.010-0.0100.0000.0000.0000.000
98A98PHE0-0.040-0.02621.3540.0060.0060.0000.0000.0000.000
99A99LEU0-0.056-0.02421.514-0.010-0.0100.0000.0000.0000.000
100A100ARG10.9190.94222.635-0.042-0.0420.0000.0000.0000.000
101A101LEU00.001-0.00218.820-0.008-0.0080.0000.0000.0000.000
102A102ALA0-0.052-0.03717.932-0.017-0.0170.0000.0000.0000.000
103A103GLU-1-0.935-0.97118.383-0.127-0.1270.0000.0000.0000.000
104A104GLY00.0220.01319.927-0.032-0.0320.0000.0000.0000.000
105A105LEU0-0.024-0.03113.520-0.008-0.0080.0000.0000.0000.000
106A106ARG10.8480.92815.3690.1710.1710.0000.0000.0000.000
107A107ALA00.0880.04516.931-0.060-0.0600.0000.0000.0000.000
108A108GLY0-0.025-0.00816.279-0.019-0.0190.0000.0000.0000.000
109A109VAL0-0.025-0.01711.744-0.036-0.0360.0000.0000.0000.000
110A110GLU-1-0.894-0.95614.128-0.461-0.4610.0000.0000.0000.000
111A111GLU-1-1.024-0.98217.174-0.238-0.2380.0000.0000.0000.000
112A112LEU0-0.037-0.02611.085-0.006-0.0060.0000.0000.0000.000
113A113LEU00.006-0.00710.685-0.106-0.1060.0000.0000.0000.000
114A114GLY00.0280.02214.8660.0030.0030.0000.0000.0000.000
115A115GLU-1-0.856-0.92617.304-0.810-0.8100.0000.0000.0000.000
116A116GLU-1-0.916-0.95612.907-1.245-1.2450.0000.0000.0000.000
117A117ALA0-0.012-0.00713.652-0.164-0.1640.0000.0000.0000.000
118A118VAL0-0.053-0.02614.733-0.009-0.0090.0000.0000.0000.000
119A119ARG10.8260.88913.6470.9720.9720.0000.0000.0000.000
120A120ILE0-0.0360.02010.679-0.208-0.2080.0000.0000.0000.000
121A121PRO0-0.036-0.04710.5910.2570.2570.0000.0000.0000.000
122A122GLY0-0.079-0.06213.4400.0610.0610.0000.0000.0000.000
123A123TRP00.3450.37013.8280.0610.0610.0000.0000.0000.000
124A124ASP-1-0.837-0.91116.749-0.494-0.4940.0000.0000.0000.000
125A125LYS10.4820.57417.4940.4170.4170.0000.0000.0000.000
126A126PRO00.0290.01620.5950.0040.0040.0000.0000.0000.000
127A127PHE00.0390.02119.2200.0080.0080.0000.0000.0000.000
128A128LYS10.9380.95521.5510.1220.1220.0000.0000.0000.000
129A129PRO00.0540.04821.8060.0070.0070.0000.0000.0000.000
130A130HIS10.8530.92921.3650.0210.0210.0000.0000.0000.000
131A131ILE00.0810.05120.2710.0120.0120.0000.0000.0000.000
132A132THR0-0.139-0.08119.067-0.030-0.0300.0000.0000.0000.000
133A133LEU00.0590.03621.0250.0320.0320.0000.0000.0000.000
134A134ALA00.0420.00922.7200.0210.0210.0000.0000.0000.000
135A135ARG10.9000.95517.126-0.052-0.0520.0000.0000.0000.000
136A136ARG10.9761.01422.3770.0450.0450.0000.0000.0000.000
137A137LYS10.9380.96719.325-0.151-0.1510.0000.0000.0000.000
138A138ALA0-0.0110.00024.211-0.010-0.0100.0000.0000.0000.000
139A139PRO00.010-0.00827.8950.0000.0000.0000.0000.0000.000
140A140ALA00.0050.01029.6610.0110.0110.0000.0000.0000.000
141A141PRO0-0.0030.02131.665-0.009-0.0090.0000.0000.0000.000
142A142ARG10.8380.91331.1410.0390.0390.0000.0000.0000.000
143A143VAL00.0090.01033.0070.0010.0010.0000.0000.0000.000
144A144PRO0-0.001-0.01134.408-0.003-0.0030.0000.0000.0000.000
145A145PRO0-0.005-0.01533.9710.0060.0060.0000.0000.0000.000
146A146VAL00.0550.03031.8890.0030.0030.0000.0000.0000.000
147A147LEU0-0.025-0.01932.7900.0000.0000.0000.0000.0000.000
148A148PHE0-0.014-0.02729.0370.0040.0040.0000.0000.0000.000
149A149GLY00.0200.02333.4260.0010.0010.0000.0000.0000.000
150A150LEU00.0280.01729.787-0.001-0.0010.0000.0000.0000.000
151A151GLU-1-0.965-0.98630.8400.0960.0960.0000.0000.0000.000
152A152TRP00.0360.00523.123-0.003-0.0030.0000.0000.0000.000
153A153PRO00.0580.01328.087-0.011-0.0110.0000.0000.0000.000
154A154VAL0-0.054-0.01921.9930.0260.0260.0000.0000.0000.000
155A155GLU-1-0.812-0.92723.1550.2090.2090.0000.0000.0000.000
156A156GLY00.0240.02219.9110.0050.0050.0000.0000.0000.000
157A157PHE0-0.102-0.04514.477-0.006-0.0060.0000.0000.0000.000
158A158ALA0-0.008-0.00712.0060.0320.0320.0000.0000.0000.000
159A159LEU00.0500.0536.838-0.123-0.1230.0000.0000.0000.000
160A160VAL0-0.056-0.0377.7340.2600.2600.0000.0000.0000.000
161A161ARG11.0591.0351.932-7.995-13.12214.379-2.403-6.8480.009
162A162SER0-0.073-0.0474.782-1.269-1.162-0.001-0.006-0.1000.000
163A163GLU-1-0.856-0.9314.9963.0163.0160.0000.0000.0000.000
164A164LEU0-0.045-0.0156.870-0.283-0.2830.0000.0000.0000.000
165A165LYS10.9700.9878.865-1.516-1.5160.0000.0000.0000.000
166A166PRO00.0870.01912.453-0.081-0.0810.0000.0000.0000.000
167A167LYS10.9320.96516.276-0.473-0.4730.0000.0000.0000.000
168A168GLY0-0.014-0.00615.024-0.059-0.0590.0000.0000.0000.000
169A169PRO0-0.040-0.01911.1660.0410.0410.0000.0000.0000.000
170A170VAL00.0110.01710.022-0.108-0.1080.0000.0000.0000.000
171A171TYR0-0.038-0.0308.9950.1580.1580.0000.0000.0000.000
172A172THR00.0450.0275.904-0.298-0.2980.0000.0000.0000.000
173A173VAL0-0.062-0.0207.1050.5520.5520.0000.0000.0000.000
174A174LEU0-0.014-0.0023.443-0.830-0.0380.243-0.242-0.7930.002
175A175GLU-1-0.803-0.9346.9550.5850.5850.0000.0000.0000.000
176A176LYS10.9020.96210.481-0.745-0.7450.0000.0000.0000.000
177A177PHE00.0560.04511.611-0.011-0.0110.0000.0000.0000.000
178A178SER0-0.049-0.03716.769-0.024-0.0240.0000.0000.0000.000
179A179LEU0-0.063-0.02020.470-0.010-0.0100.0000.0000.0000.000
180A180ARG10.9140.94323.015-0.191-0.1910.0000.0000.0000.000
181A181GLY00.0290.02225.383-0.011-0.0110.0000.0000.0000.000
182A182GLU-1-0.949-0.97426.9100.1010.1010.0000.0000.0000.000
183A183HIS0-0.052-0.02028.554-0.009-0.0090.0000.0000.0000.000