Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

tag_button

FMODB ID: LL2Q9

Calculation Name: 1FO1-A-Xray309

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1FO1

Chain ID: A

ChEMBL ID:

UniProt ID: Q9UBU9

Base Structure: X-ray

Registration Date: 2021-09-06

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200116
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 224
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2560033.460989
FMO2-HF: Nuclear repulsion 2471298.197566
FMO2-HF: Total energy -88735.263424
FMO2-MP2: Total energy -88995.409463


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:122:ACE )


Summations of interaction energy for fragment #1(A:122:ACE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.0640.3410.38-1.005-0.779-0.003
Interaction energy analysis for fragmet #1(A:122:ACE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.025 / q_NPA : 0.007
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A124ILE 00.0060.0123.8601.2432.007-0.005-0.360-0.3990.000
4A125PRO 00.011-0.0077.0660.1030.1030.0000.0000.0000.000
5A126TYR 0-0.065-0.10910.1700.0990.0990.0000.0000.0000.000
6A127GLY 00.0900.05910.1810.0730.0730.0000.0000.0000.000
7A128ARG 10.9520.94811.1890.3490.3490.0000.0000.0000.000
8A129LYS 10.8090.92213.8330.2330.2330.0000.0000.0000.000
9A130TYR 0-0.020-0.03913.7580.0520.0520.0000.0000.0000.000
10A131ASP -1-0.870-0.93514.272-0.137-0.1370.0000.0000.0000.000
11A132LYS 10.9430.96611.7080.2010.2010.0000.0000.0000.000
12A133ALA 00.0400.04613.9480.0300.0300.0000.0000.0000.000
13A134TRP 00.0570.03215.0170.0250.0250.0000.0000.0000.000
14A135LEU 0-0.011-0.0089.3520.0150.0150.0000.0000.0000.000
15A136LEU 0-0.023-0.00611.0910.0380.0380.0000.0000.0000.000
16A137SER 00.014-0.00512.7250.0540.0540.0000.0000.0000.000
17A138MET 0-0.0140.00714.5410.0180.0180.0000.0000.0000.000
18A139ILE 00.020-0.0258.2430.0210.0210.0000.0000.0000.000
19A140GLN 0-0.007-0.00212.3220.0470.0470.0000.0000.0000.000
20A141SER 0-0.049-0.01214.0970.0030.0030.0000.0000.0000.000
21A142LYS 10.8840.96314.942-0.074-0.0740.0000.0000.0000.000
22A143CYS 0-0.096-0.02011.6590.0380.0380.0000.0000.0000.000
23A144SER 00.000-0.01413.917-0.018-0.0180.0000.0000.0000.000
24A145VAL 00.0290.01215.7220.0340.0340.0000.0000.0000.000
25A146PRO 0-0.0060.01412.616-0.018-0.0180.0000.0000.0000.000
26A147PHE 00.023-0.01011.7520.0590.0590.0000.0000.0000.000
27A148THR 0-0.018-0.01610.941-0.069-0.0690.0000.0000.0000.000
28A149PRO 0-0.037-0.0158.9810.1090.1090.0000.0000.0000.000
29A150ILE 0-0.011-0.0065.8710.1220.1220.0000.0000.0000.000
30A151GLU -1-0.936-0.9407.380-0.080-0.0800.0000.0000.0000.000
31A152PHE 0-0.020-0.0037.619-0.116-0.1160.0000.0000.0000.000
32A153HIS 00.048-0.0257.6440.1170.1170.0000.0000.0000.000
33A154TYR 0-0.0380.0048.888-0.189-0.1890.0000.0000.0000.000
34A155GLU -1-0.812-0.8808.965-0.934-0.9340.0000.0000.0000.000
35A156ASN 00.0100.01111.672-0.011-0.0110.0000.0000.0000.000
36A157THR 0-0.0170.00113.8750.0360.0360.0000.0000.0000.000
37A158ARG 10.8980.9458.5370.9010.9010.0000.0000.0000.000
38A159ALA 0-0.0170.0097.9380.1460.1460.0000.0000.0000.000
39A160NME 00.0480.0295.000-0.649-0.6490.0000.0000.0000.000
40A170ACE 0-0.023-0.02312.6020.0150.0150.0000.0000.0000.000
41A171ALA 00.0740.03411.698-0.058-0.0580.0000.0000.0000.000
42A172LEU 00.0530.0435.616-0.009-0.0090.0000.0000.0000.000
43A173LYS 10.9950.9797.630-0.838-0.8380.0000.0000.0000.000
44A174ALA 00.0200.0068.880-0.121-0.1210.0000.0000.0000.000
45A175VAL 00.0220.0059.123-0.057-0.0570.0000.0000.0000.000
46A176ASN 00.0360.0179.440-0.150-0.1500.0000.0000.0000.000
47A177TYR 0-0.004-0.01410.991-0.023-0.0230.0000.0000.0000.000
48A178LYN 00.0370.03813.050-0.005-0.0050.0000.0000.0000.000
49A179ILE 0-0.059-0.02212.433-0.003-0.0030.0000.0000.0000.000
50A180LEU 0-0.006-0.02615.796-0.018-0.0180.0000.0000.0000.000
51A181ASP -1-0.719-0.82517.050-0.146-0.1460.0000.0000.0000.000
52A182ARG 10.9120.96019.4160.0750.0750.0000.0000.0000.000
53A183GLU -1-0.894-0.96421.398-0.086-0.0860.0000.0000.0000.000
54A184ASN 0-0.070-0.03622.390-0.003-0.0030.0000.0000.0000.000
55A185ARG 10.9581.00416.8700.1860.1860.0000.0000.0000.000
56A186ARG 10.9050.95516.2520.0190.0190.0000.0000.0000.000
57A187ILE 0-0.0310.00610.508-0.037-0.0370.0000.0000.0000.000
58A188SER 0-0.049-0.0169.8450.0370.0370.0000.0000.0000.000
59A189ILE 00.020-0.0225.113-0.141-0.1410.0000.0000.0000.000
60A190ILE 0-0.004-0.0035.3850.3510.3510.0000.0000.0000.000
61A191ILE 0-0.028-0.0042.590-1.421-0.7860.385-0.657-0.363-0.003
62A192NME 00.0150.0153.668-0.424-0.4180.0000.012-0.0170.000
63A202ACE 0-0.028-0.02520.853-0.002-0.0020.0000.0000.0000.000
64A203GLU -1-0.939-0.97321.7440.0140.0140.0000.0000.0000.000
65A204LEU 00.0170.01322.485-0.005-0.0050.0000.0000.0000.000
66A205LYS 10.8910.95125.3460.0190.0190.0000.0000.0000.000
67A206PRO 00.0700.01027.6430.0020.0020.0000.0000.0000.000
68A207GLU -1-0.841-0.92728.701-0.001-0.0010.0000.0000.0000.000
69A208GLN 00.0220.01621.9070.0000.0000.0000.0000.0000.000
70A209VAL 0-0.0060.00926.6030.0070.0070.0000.0000.0000.000
71A210GLU -1-0.873-0.94428.6220.0170.0170.0000.0000.0000.000
72A211GLN 00.0650.05025.9780.0070.0070.0000.0000.0000.000
73A212LEU 0-0.024-0.00524.6060.0050.0050.0000.0000.0000.000
74A213LYS 10.8970.94326.963-0.012-0.0120.0000.0000.0000.000
75A214LEU 0-0.0040.00829.1250.0020.0020.0000.0000.0000.000
76A215ILE 00.0110.00424.6500.0020.0020.0000.0000.0000.000
77A216MET 0-0.045-0.02027.7620.0040.0040.0000.0000.0000.000
78A217SER 0-0.017-0.00929.5820.0010.0010.0000.0000.0000.000
79A218LYS 10.8960.96029.219-0.038-0.0380.0000.0000.0000.000
80A219ARG 10.7600.87222.651-0.090-0.0900.0000.0000.0000.000
81A220TYR 00.0000.01130.4580.0030.0030.0000.0000.0000.000
82A221ASP -1-0.799-0.87733.9710.0410.0410.0000.0000.0000.000
83A222GLY 0-0.036-0.02836.665-0.001-0.0010.0000.0000.0000.000
84A223SER 0-0.107-0.06539.605-0.001-0.0010.0000.0000.0000.000
85A224GLN 00.0320.01238.972-0.003-0.0030.0000.0000.0000.000
86A225GLN 0-0.043-0.01639.1970.0000.0000.0000.0000.0000.000
87A226VAL 00.011-0.01033.7240.0020.0020.0000.0000.0000.000
88A227LEU 00.0180.01330.7610.0000.0000.0000.0000.0000.000
89A228ASP -1-0.858-0.94827.9530.0950.0950.0000.0000.0000.000
90A229LEU 0-0.022-0.02526.1130.0000.0000.0000.0000.0000.000
91A230LYS 10.9430.97823.505-0.111-0.1110.0000.0000.0000.000
92A231GLY 00.0140.00620.4120.0020.0020.0000.0000.0000.000
93A232LEU 0-0.029-0.00220.1330.0030.0030.0000.0000.0000.000
94A233ARG 10.7720.83113.080-0.193-0.1930.0000.0000.0000.000
95A234SER 0-0.024-0.02215.6620.0040.0040.0000.0000.0000.000
96A235ASP -1-0.768-0.87616.9640.0740.0740.0000.0000.0000.000
97A236PRO 00.0200.00819.052-0.005-0.0050.0000.0000.0000.000
98A237ASP -1-0.843-0.91419.5650.0410.0410.0000.0000.0000.000
99A238LEU 0-0.039-0.01320.285-0.013-0.0130.0000.0000.0000.000
100A239VAL 0-0.0110.00414.727-0.008-0.0080.0000.0000.0000.000
101A240ALA 0-0.056-0.01917.227-0.021-0.0210.0000.0000.0000.000
102A241GLN 0-0.096-0.09319.065-0.024-0.0240.0000.0000.0000.000
103A242ASN 0-0.074-0.03515.844-0.003-0.0030.0000.0000.0000.000
104A243ILE 0-0.086-0.04018.068-0.009-0.0090.0000.0000.0000.000
105A244ASP -1-0.755-0.82314.9270.1500.1500.0000.0000.0000.000
106A245VAL 00.0210.00817.653-0.009-0.0090.0000.0000.0000.000
107A246VAL 0-0.026-0.02316.1780.0200.0200.0000.0000.0000.000
108A247LEU 00.1090.03919.127-0.011-0.0110.0000.0000.0000.000
109A248ASN 0-0.097-0.02717.547-0.018-0.0180.0000.0000.0000.000
110A249ARG 10.9830.97317.024-0.082-0.0820.0000.0000.0000.000
111A250ARG 11.0241.02022.125-0.039-0.0390.0000.0000.0000.000
112A251SER 0-0.026-0.01724.3410.0010.0010.0000.0000.0000.000
113A252CYS 00.0570.03622.069-0.004-0.0040.0000.0000.0000.000
114A253MET 00.0140.02324.559-0.002-0.0020.0000.0000.0000.000
115A254ALA 0-0.032-0.01726.706-0.004-0.0040.0000.0000.0000.000
116A255ALA 00.0080.00326.996-0.002-0.0020.0000.0000.0000.000
117A256THR 00.027-0.00926.346-0.001-0.0010.0000.0000.0000.000
118A257LEU 00.0160.00329.025-0.002-0.0020.0000.0000.0000.000
119A258ARG 10.8460.94231.783-0.019-0.0190.0000.0000.0000.000
120A259ILE 00.0070.00529.650-0.002-0.0020.0000.0000.0000.000
121A260ILE 00.005-0.00631.362-0.001-0.0010.0000.0000.0000.000
122A261GLU -1-0.896-0.94734.8900.0240.0240.0000.0000.0000.000
123A262GLU -1-0.929-0.97636.0850.0170.0170.0000.0000.0000.000
124A263ASN 0-0.082-0.05235.666-0.004-0.0040.0000.0000.0000.000
125A264ILE 0-0.059-0.01834.2270.0000.0000.0000.0000.0000.000
126A265PRO 00.0360.01538.6640.0020.0020.0000.0000.0000.000
127A266GLU -1-0.931-0.96541.3690.0280.0280.0000.0000.0000.000
128A267LEU 0-0.081-0.01334.7780.0020.0020.0000.0000.0000.000
129A268LEU 00.0250.02239.2500.0000.0000.0000.0000.0000.000
130A269SER 0-0.0180.00135.8610.0030.0030.0000.0000.0000.000
131A270LEU 00.0650.02230.3920.0000.0000.0000.0000.0000.000
132A271ASN 00.0150.02528.3190.0060.0060.0000.0000.0000.000
133A272LEU 00.0570.01526.8200.0010.0010.0000.0000.0000.000
134A273SER 0-0.0260.01825.7430.0120.0120.0000.0000.0000.000
135A274ASN 0-0.013-0.02120.6500.0040.0040.0000.0000.0000.000
136A275ASN 0-0.048-0.04120.4820.0150.0150.0000.0000.0000.000
137A276ARG 10.9050.95014.441-0.343-0.3430.0000.0000.0000.000
138A277LEU 00.0050.00720.033-0.004-0.0040.0000.0000.0000.000
139A278TYR 00.020-0.00920.747-0.003-0.0030.0000.0000.0000.000
140A279ARG 10.9440.97624.457-0.077-0.0770.0000.0000.0000.000
141A280LEU 00.0480.01826.7510.0000.0000.0000.0000.0000.000
142A281ASP -1-0.944-0.98429.4760.0570.0570.0000.0000.0000.000
143A282ASP -1-0.887-0.95126.3110.0590.0590.0000.0000.0000.000
144A283MET 0-0.018-0.02129.489-0.001-0.0010.0000.0000.0000.000
145A284SER 00.0510.03931.632-0.002-0.0020.0000.0000.0000.000
146A285SER 0-0.065-0.03333.975-0.002-0.0020.0000.0000.0000.000
147A286ILE 00.0410.02133.413-0.002-0.0020.0000.0000.0000.000
148A287VAL 0-0.024-0.01835.862-0.002-0.0020.0000.0000.0000.000
149A288GLN 0-0.061-0.02239.040-0.002-0.0020.0000.0000.0000.000
150A289LYS 10.8600.92134.377-0.032-0.0320.0000.0000.0000.000
151A290ALA 00.0200.02736.869-0.001-0.0010.0000.0000.0000.000
152A291PRO 00.0040.00638.9110.0020.0020.0000.0000.0000.000
153A292ASN 0-0.051-0.03342.4280.0000.0000.0000.0000.0000.000
154A293LEU 00.0210.02835.4650.0010.0010.0000.0000.0000.000
155A294LYS 10.8830.92839.836-0.036-0.0360.0000.0000.0000.000
156A295ILE 00.0200.02535.7080.0010.0010.0000.0000.0000.000
157A296LEU 00.0260.02032.1970.0010.0010.0000.0000.0000.000
158A297ASN 00.0540.01029.2210.0090.0090.0000.0000.0000.000
159A298LEU 00.0500.00728.4680.0030.0030.0000.0000.0000.000
160A299SER 0-0.0250.00827.3900.0090.0090.0000.0000.0000.000
161A300GLY 00.0530.02324.0530.0040.0040.0000.0000.0000.000
162A301ASN 0-0.110-0.05722.5410.0230.0230.0000.0000.0000.000
163A302GLU -1-0.936-0.97718.3160.2500.2500.0000.0000.0000.000
164A303LEU 0-0.0060.00223.068-0.006-0.0060.0000.0000.0000.000
165A304LYS 10.9450.96222.137-0.143-0.1430.0000.0000.0000.000
166A305SER 0-0.028-0.01227.657-0.006-0.0060.0000.0000.0000.000
167A306GLU -1-0.768-0.89731.3060.0630.0630.0000.0000.0000.000
168A307ARG 10.9590.98331.336-0.071-0.0710.0000.0000.0000.000
169A308GLU -1-0.904-0.94629.0400.0750.0750.0000.0000.0000.000
170A309LEU 00.007-0.00632.331-0.002-0.0020.0000.0000.0000.000
171A310ASP -1-0.825-0.93034.7850.0480.0480.0000.0000.0000.000
172A311LYS 10.8290.92132.736-0.053-0.0530.0000.0000.0000.000
173A312ILE 00.0220.00733.507-0.002-0.0020.0000.0000.0000.000
174A313LYS 10.9190.97636.739-0.042-0.0420.0000.0000.0000.000
175A314GLY 0-0.0280.00140.015-0.001-0.0010.0000.0000.0000.000
176A315LEU 00.0220.02436.117-0.002-0.0020.0000.0000.0000.000
177A316LYS 10.9280.96940.579-0.031-0.0310.0000.0000.0000.000
178A317LEU 0-0.041-0.02136.834-0.001-0.0010.0000.0000.0000.000
179A318GLU -1-0.922-0.97641.1740.0370.0370.0000.0000.0000.000
180A319GLU -1-0.854-0.90637.2770.0580.0580.0000.0000.0000.000
181A320LEU 0-0.016-0.00134.0510.0010.0010.0000.0000.0000.000
182A321TRP 0-0.055-0.00531.8310.0040.0040.0000.0000.0000.000
183A322LEU 0-0.017-0.02330.7730.0030.0030.0000.0000.0000.000
184A323ASP -1-0.905-0.94529.5360.1160.1160.0000.0000.0000.000
185A324GLY 00.0800.02426.6260.0060.0060.0000.0000.0000.000
186A325ASN 0-0.055-0.00725.3020.0200.0200.0000.0000.0000.000
187A326SER 00.0620.02624.957-0.007-0.0070.0000.0000.0000.000
188A327LEU 0-0.007-0.01026.867-0.006-0.0060.0000.0000.0000.000
189A328CYS 0-0.054-0.04129.692-0.008-0.0080.0000.0000.0000.000
190A329ASP -1-0.936-0.93928.5220.1130.1130.0000.0000.0000.000
191A330THR 0-0.068-0.03931.216-0.002-0.0020.0000.0000.0000.000
192A331PHE 0-0.052-0.01432.978-0.007-0.0070.0000.0000.0000.000
193A332ARG 10.9280.96635.977-0.056-0.0560.0000.0000.0000.000
194A333ASP -1-0.805-0.89138.4960.0550.0550.0000.0000.0000.000
195A334GLN 00.1270.04939.3390.0030.0030.0000.0000.0000.000
196A335SER 0-0.013-0.01640.3310.0000.0000.0000.0000.0000.000
197A336THR 0-0.053-0.02840.587-0.003-0.0030.0000.0000.0000.000
198A337TYR 0-0.053-0.04634.8390.0000.0000.0000.0000.0000.000
199A338ILE 00.0260.00739.130-0.001-0.0010.0000.0000.0000.000
200A339SER 0-0.034-0.02941.322-0.001-0.0010.0000.0000.0000.000
201A340ALA 00.0090.01339.159-0.002-0.0020.0000.0000.0000.000
202A341ILE 0-0.014-0.01135.843-0.001-0.0010.0000.0000.0000.000
203A342ARG 10.8530.88539.514-0.045-0.0450.0000.0000.0000.000
204A343GLU -1-0.939-0.94541.9340.0380.0380.0000.0000.0000.000
205A344ARG 10.7210.84838.199-0.056-0.0560.0000.0000.0000.000
206A345PHE 0-0.017-0.00737.121-0.001-0.0010.0000.0000.0000.000
207A346PRO 00.0380.01442.5370.0000.0000.0000.0000.0000.000
208A347LYS 10.8970.93945.686-0.033-0.0330.0000.0000.0000.000
209A348LEU 0-0.0110.01939.4520.0000.0000.0000.0000.0000.000
210A349LEU 0-0.031-0.01943.178-0.001-0.0010.0000.0000.0000.000
211A350ARG 10.8890.93940.092-0.049-0.0490.0000.0000.0000.000
212A351LEU 0-0.031-0.02036.6280.0000.0000.0000.0000.0000.000
213A352ASP -1-0.716-0.86433.8060.0820.0820.0000.0000.0000.000
214A353GLY 0-0.023-0.00635.4980.0010.0010.0000.0000.0000.000
215A354HIS 0-0.0160.00337.252-0.006-0.0060.0000.0000.0000.000
216A355GLU -1-0.950-0.97440.6760.0450.0450.0000.0000.0000.000
217A356LEU 0-0.0250.00441.8040.0000.0000.0000.0000.0000.000
218A357PRO 00.0580.03145.370-0.002-0.0020.0000.0000.0000.000
219A358PRO 00.0430.02948.7830.0010.0010.0000.0000.0000.000
220A359PRO 0-0.025-0.02548.9990.0000.0000.0000.0000.0000.000
221A360ILE 00.0130.01151.246-0.001-0.0010.0000.0000.0000.000
222A361ALA 0-0.032-0.00954.2180.0000.0000.0000.0000.0000.000
223A362PHE 00.0180.00954.747-0.001-0.0010.0000.0000.0000.000
224A363NME 0-0.0070.00658.0020.0000.0000.0000.0000.0000.000