Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: N94RQ

Calculation Name: 1AZZ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1AZZ

Chain ID: A

ChEMBL ID:

UniProt ID: P00771

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 223
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2543330.034387
FMO2-HF: Nuclear repulsion 2459795.531818
FMO2-HF: Total energy -83534.502569
FMO2-MP2: Total energy -83775.369378


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:16:ILE)


Summations of interaction energy for fragment #1(A:16:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-34.193-28.62845.427-20.175-30.816-0.13
Interaction energy analysis for fragmet #1(A:16:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.050 / q_NPA : -0.050
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A18GLY00.0380.0113.522-0.0801.9520.031-0.861-1.2010.004
4A19GLY00.001-0.0072.802-0.5080.1430.189-0.282-0.5580.001
5A20VAL0-0.116-0.0593.649-0.659-0.668-0.0020.114-0.1040.000
6A21GLU-1-0.846-0.9135.0951.2441.321-0.001-0.002-0.0740.000
7A22ALA00.0170.0136.816-0.143-0.1430.0000.0000.0000.000
8A23VAL0-0.005-0.0048.456-0.099-0.0990.0000.0000.0000.000
9A24PRO00.0430.03011.560-0.006-0.0060.0000.0000.0000.000
10A25ASN00.0180.00012.514-0.049-0.0490.0000.0000.0000.000
11A26SER0-0.071-0.05210.968-0.022-0.0220.0000.0000.0000.000
12A27TRP00.0120.0027.657-0.101-0.1010.0000.0000.0000.000
13A28PRO0-0.009-0.00110.966-0.030-0.0300.0000.0000.0000.000
14A29HIS00.0120.0209.637-0.022-0.0220.0000.0000.0000.000
15A30GLN0-0.0120.0076.522-0.011-0.0110.0000.0000.0000.000
16A31ALA0-0.012-0.00610.4680.0300.0300.0000.0000.0000.000
17A32ALA00.0310.01310.155-0.071-0.0710.0000.0000.0000.000
18A33LEU0-0.056-0.02811.3850.0450.0450.0000.0000.0000.000
19A34PHE00.0320.01013.074-0.061-0.0610.0000.0000.0000.000
20A35ILE0-0.005-0.01414.5090.0270.0270.0000.0000.0000.000
21A37ASP-1-0.775-0.88717.347-0.174-0.1740.0000.0000.0000.000
22A38ASP-1-0.943-0.97119.335-0.102-0.1020.0000.0000.0000.000
23A39MET0-0.098-0.04917.837-0.004-0.0040.0000.0000.0000.000
24A40TYR0-0.057-0.02713.859-0.038-0.0380.0000.0000.0000.000
25A41PHE0-0.0050.0027.3100.0640.0640.0000.0000.0000.000
26A42CYS0-0.138-0.0639.191-0.207-0.2070.0000.0000.0000.000
27A43GLY00.0670.0427.7610.1130.1130.0000.0000.0000.000
28A44GLY00.0250.0008.805-0.001-0.0010.0000.0000.0000.000
29A45SER0-0.022-0.00110.1080.0670.0670.0000.0000.0000.000
30A46LEU00.0070.01312.231-0.014-0.0140.0000.0000.0000.000
31A47ILE0-0.0020.00415.4930.0220.0220.0000.0000.0000.000
32A48SER00.007-0.02217.5770.0080.0080.0000.0000.0000.000
33A49PRO00.013-0.01620.449-0.006-0.0060.0000.0000.0000.000
34A50GLU-1-0.822-0.87422.516-0.009-0.0090.0000.0000.0000.000
35A51TRP00.0220.02719.918-0.011-0.0110.0000.0000.0000.000
36A52ILE00.0220.01614.2570.0150.0150.0000.0000.0000.000
37A53LEU0-0.020-0.00513.911-0.005-0.0050.0000.0000.0000.000
38A54THR00.021-0.00711.814-0.023-0.0230.0000.0000.0000.000
39A55ALA00.0310.00911.8750.0230.0230.0000.0000.0000.000
40A56ALA0-0.0170.00213.6880.0050.0050.0000.0000.0000.000
41A57HIS10.8010.86811.5520.5500.5500.0000.0000.0000.000
42A59MET00.0090.00315.3220.0250.0250.0000.0000.0000.000
43A60ASP-1-0.921-0.95718.507-0.173-0.1730.0000.0000.0000.000
44A61GLY0-0.057-0.02321.1820.0180.0180.0000.0000.0000.000
45A61ALA0-0.047-0.00720.1370.0050.0050.0000.0000.0000.000
46A61GLY0-0.024-0.01522.1720.0160.0160.0000.0000.0000.000
47A62PHE0-0.079-0.04421.8870.0110.0110.0000.0000.0000.000
48A63VAL0-0.008-0.00216.917-0.021-0.0210.0000.0000.0000.000
49A64ASP-1-0.813-0.89418.456-0.046-0.0460.0000.0000.0000.000
50A65VAL0-0.022-0.01915.943-0.018-0.0180.0000.0000.0000.000
51A66VAL0-0.011-0.01614.2520.0180.0180.0000.0000.0000.000
52A68LEU0-0.041-0.03514.2500.0040.0040.0000.0000.0000.000
53A69GLY00.0660.03415.0460.0020.0020.0000.0000.0000.000
54A70ALA0-0.0060.01012.4070.0000.0000.0000.0000.0000.000
55A71HIS0-0.084-0.0559.4410.0030.0030.0000.0000.0000.000
56A72ASN00.042-0.00910.5610.0940.0940.0000.0000.0000.000
57A73ILE0-0.001-0.01510.399-0.080-0.0800.0000.0000.0000.000
58A74ARG10.8720.93912.320-0.091-0.0910.0000.0000.0000.000
59A75GLU-1-0.994-0.98715.8210.1990.1990.0000.0000.0000.000
60A76ASP-1-0.924-0.94617.8660.0730.0730.0000.0000.0000.000
61A77GLU-1-0.782-0.88115.2800.3000.3000.0000.0000.0000.000
62A78ALA0-0.028-0.03119.536-0.013-0.0130.0000.0000.0000.000
63A79THR0-0.082-0.05717.120-0.011-0.0110.0000.0000.0000.000
64A80GLN0-0.054-0.02215.906-0.035-0.0350.0000.0000.0000.000
65A81VAL0-0.0110.00718.610-0.013-0.0130.0000.0000.0000.000
66A82THR00.0410.02518.6960.0000.0000.0000.0000.0000.000
67A83ILE0-0.072-0.03519.9120.0020.0020.0000.0000.0000.000
68A84GLN0-0.030-0.01620.628-0.008-0.0080.0000.0000.0000.000
69A85SER0-0.071-0.05721.5350.0070.0070.0000.0000.0000.000
70A86THR0-0.006-0.01723.042-0.008-0.0080.0000.0000.0000.000
71A87ASP-1-0.960-0.95724.260-0.059-0.0590.0000.0000.0000.000
72A88PHE00.0470.00820.6830.0000.0000.0000.0000.0000.000
73A89THR0-0.057-0.00221.7590.0030.0030.0000.0000.0000.000
74A90VAL00.0260.00319.974-0.008-0.0080.0000.0000.0000.000
75A91HIS00.0290.01020.8430.0090.0090.0000.0000.0000.000
76A92GLU-1-0.839-0.91822.669-0.089-0.0890.0000.0000.0000.000
77A93ASN0-0.073-0.04224.984-0.001-0.0010.0000.0000.0000.000
78A94TYR00.0080.01218.323-0.011-0.0110.0000.0000.0000.000
79A95ASN0-0.006-0.00322.1000.0010.0010.0000.0000.0000.000
80A96SER00.0490.01620.665-0.007-0.0070.0000.0000.0000.000
81A97PHE0-0.100-0.04021.194-0.017-0.0170.0000.0000.0000.000
82A98VAL0-0.040-0.03521.732-0.007-0.0070.0000.0000.0000.000
83A99ILE00.0220.02815.669-0.005-0.0050.0000.0000.0000.000
84A100SER00.0300.02617.917-0.005-0.0050.0000.0000.0000.000
85A101ASN0-0.023-0.04419.2830.0050.0050.0000.0000.0000.000
86A102ASP-1-0.701-0.80314.453-0.350-0.3500.0000.0000.0000.000
87A103ILE0-0.052-0.01115.219-0.014-0.0140.0000.0000.0000.000
88A104ALA00.0400.01616.3270.0100.0100.0000.0000.0000.000
89A105VAL0-0.035-0.00316.823-0.002-0.0020.0000.0000.0000.000
90A106ILE00.0490.01116.333-0.005-0.0050.0000.0000.0000.000
91A107ARG10.8670.91019.8550.0370.0370.0000.0000.0000.000
92A108LEU0-0.043-0.01419.474-0.003-0.0030.0000.0000.0000.000
93A109PRO00.001-0.01423.0990.0040.0040.0000.0000.0000.000
94A110VAL0-0.002-0.00225.8850.0020.0020.0000.0000.0000.000
95A111PRO0-0.069-0.02224.9720.0010.0010.0000.0000.0000.000
96A112VAL00.0310.01821.0040.0030.0030.0000.0000.0000.000
97A113THR0-0.046-0.02623.9610.0010.0010.0000.0000.0000.000
98A114LEU00.0060.00221.3340.0050.0050.0000.0000.0000.000
99A115THR0-0.024-0.01420.9960.0050.0050.0000.0000.0000.000
100A116ALA0-0.051-0.03520.6580.0020.0020.0000.0000.0000.000
101A117ALA00.0100.00216.9060.0170.0170.0000.0000.0000.000
102A118ILE00.0130.03216.0820.0090.0090.0000.0000.0000.000
103A119ALA0-0.014-0.01216.792-0.014-0.0140.0000.0000.0000.000
104A120THR0-0.0080.00516.4700.0020.0020.0000.0000.0000.000
105A121VAL00.0090.01612.5330.0200.0200.0000.0000.0000.000
106A122GLY0-0.030-0.01315.645-0.020-0.0200.0000.0000.0000.000
107A123LEU00.0490.01316.0770.0040.0040.0000.0000.0000.000
108A124PRO00.0250.01315.9930.0060.0060.0000.0000.0000.000
109A125SER00.0120.00118.922-0.010-0.0100.0000.0000.0000.000
110A127THR0-0.048-0.02721.460-0.006-0.0060.0000.0000.0000.000
111A128ASP-1-0.804-0.90017.4570.0160.0160.0000.0000.0000.000
112A129VAL0-0.0310.00014.5720.0030.0030.0000.0000.0000.000
113A130GLY0-0.016-0.00817.795-0.013-0.0130.0000.0000.0000.000
114A132VAL00.0440.00917.2210.0160.0160.0000.0000.0000.000
115A133GLY0-0.041-0.01216.384-0.001-0.0010.0000.0000.0000.000
116A134THR0-0.061-0.03414.0480.0220.0220.0000.0000.0000.000
117A135VAL0-0.043-0.00810.280-0.013-0.0130.0000.0000.0000.000
118A136VAL0-0.013-0.0048.583-0.023-0.0230.0000.0000.0000.000
119A137THR00.0410.0055.5710.0240.0240.0000.0000.0000.000
120A138PRO0-0.037-0.0022.741-1.185-0.2480.357-0.303-0.9900.003
121A139THR0-0.008-0.0112.754-1.2510.3541.152-0.903-1.854-0.008
122A140GLY00.003-0.0122.603-2.413-1.3831.300-0.520-1.811-0.007
123A141TRP0-0.012-0.0113.2041.0891.9350.161-0.182-0.825-0.003
124A142GLY00.0240.0213.143-0.0740.4120.054-0.178-0.3620.001
125A143LEU00.014-0.0243.3791.9972.9480.186-0.468-0.669-0.001
126A144PRO0-0.0050.0041.874-5.448-8.8959.201-3.252-2.503-0.024
127A145SER0-0.030-0.0193.8610.1380.241-0.001-0.015-0.0870.000
128A146ASP-1-0.775-0.8916.386-1.233-1.2330.0000.0000.0000.000
129A147SER0-0.098-0.0448.5520.1310.1310.0000.0000.0000.000
130A148ALA0-0.074-0.0217.1330.1820.1820.0000.0000.0000.000
131A149LEU00.010-0.0169.105-0.016-0.0160.0000.0000.0000.000
132A150GLY0-0.029-0.0099.4720.0350.0350.0000.0000.0000.000
133A151ILE0-0.036-0.0056.554-0.129-0.1290.0000.0000.0000.000
134A152SER0-0.073-0.0345.1610.0270.0270.0000.0000.0000.000
135A153ASP-1-0.879-0.9387.1510.3590.3590.0000.0000.0000.000
136A154VAL0-0.0240.0047.564-0.064-0.0640.0000.0000.0000.000
137A155LEU0-0.0530.0024.9140.4620.4620.0000.0000.0000.000
138A156ARG10.9310.9652.197-4.075-3.4352.633-1.039-2.2350.002
139A157GLN00.0550.0202.768-3.166-1.1780.971-0.778-2.181-0.010
140A158VAL0-0.020-0.0102.5000.012-0.0424.157-0.650-3.4520.000
141A159ASP-1-0.901-0.9343.7340.3660.4990.0080.051-0.1920.000
142A160VAL0-0.026-0.0166.342-0.059-0.0590.0000.0000.0000.000
143A161PRO00.0080.0018.697-0.020-0.0200.0000.0000.0000.000
144A162ILE00.0340.03411.826-0.036-0.0360.0000.0000.0000.000
145A163MET00.0160.01813.389-0.006-0.0060.0000.0000.0000.000
146A164SER0-0.078-0.04915.863-0.007-0.0070.0000.0000.0000.000
147A165ASN00.0770.01318.049-0.001-0.0010.0000.0000.0000.000
148A166ALA0-0.0160.00319.054-0.015-0.0150.0000.0000.0000.000
149A167ASP-1-0.836-0.92118.826-0.043-0.0430.0000.0000.0000.000
150A168CYS0-0.033-0.02811.917-0.064-0.0640.0000.0000.0000.000
151A169ASP-1-0.864-0.93717.425-0.151-0.1510.0000.0000.0000.000
152A170ALA0-0.053-0.01020.254-0.006-0.0060.0000.0000.0000.000
153A171VAL0-0.074-0.02716.751-0.004-0.0040.0000.0000.0000.000
154A172TYR0-0.044-0.06012.837-0.021-0.0210.0000.0000.0000.000
155A174GLY0-0.042-0.00419.268-0.007-0.0070.0000.0000.0000.000
156A175ILE0-0.032-0.01417.7050.0110.0110.0000.0000.0000.000
157A176VAL0-0.038-0.01216.781-0.008-0.0080.0000.0000.0000.000
158A177THR0-0.020-0.01419.2750.0220.0220.0000.0000.0000.000
159A178ASP-1-0.906-0.96919.651-0.060-0.0600.0000.0000.0000.000
160A179GLY0-0.0110.00719.3580.0100.0100.0000.0000.0000.000
161A180ASN0-0.026-0.01314.746-0.004-0.0040.0000.0000.0000.000
162A181ILE00.0030.01412.3760.0280.0280.0000.0000.0000.000
163A183ILE0-0.0110.0147.2860.0580.0580.0000.0000.0000.000
164A184ASP-1-0.832-0.90910.706-0.077-0.0770.0000.0000.0000.000
165A185SER00.031-0.0098.1550.0820.0820.0000.0000.0000.000
166A186THR0-0.037-0.0459.529-0.045-0.0450.0000.0000.0000.000
167A187GLY0-0.058-0.03610.9120.0700.0700.0000.0000.0000.000
168A188GLY0-0.0040.0088.9710.0570.0570.0000.0000.0000.000
169A188LYS10.8630.9325.387-0.346-0.3460.0000.0000.0000.000
170A189GLY00.0670.0223.677-0.3550.0090.001-0.115-0.2490.000
171A190THR0-0.065-0.0032.249-2.549-0.9516.615-3.987-4.226-0.027
172A191CYS0-0.022-0.0072.8470.3231.3060.139-0.069-1.0530.002
173A192ASN00.017-0.0264.315-0.444-0.277-0.001-0.019-0.1470.000
174A193GLY00.0400.0295.494-0.178-0.1780.0000.0000.0000.000
175A194ASP-1-0.712-0.8571.745-15.451-21.02918.278-6.713-5.986-0.063
176A195SER0-0.054-0.0385.0400.6250.687-0.001-0.004-0.0570.000
177A196GLY00.0250.0148.2980.0370.0370.0000.0000.0000.000
178A197GLY00.0140.0146.0040.1340.1340.0000.0000.0000.000
179A198PRO0-0.050-0.0196.3920.0260.0260.0000.0000.0000.000
180A199LEU00.0350.0395.7310.0860.0860.0000.0000.0000.000
181A200ASN0-0.049-0.0346.758-0.144-0.1440.0000.0000.0000.000
182A201TYR00.032-0.0019.6390.0470.0470.0000.0000.0000.000
183A202ASN0-0.035-0.02812.502-0.027-0.0270.0000.0000.0000.000
184A203GLY00.0260.02214.388-0.024-0.0240.0000.0000.0000.000
185A204LEU0-0.041-0.00714.864-0.022-0.0220.0000.0000.0000.000
186A209THR00.0290.01210.7600.0450.0450.0000.0000.0000.000
187A210TYR0-0.003-0.03411.605-0.021-0.0210.0000.0000.0000.000
188A211GLY0-0.008-0.01410.799-0.016-0.0160.0000.0000.0000.000
189A212ILE0-0.0040.0219.5580.0180.0180.0000.0000.0000.000
190A213THR0-0.0130.0004.8520.1670.1670.0000.0000.0000.000
191A214SER0-0.052-0.0337.929-0.045-0.0450.0000.0000.0000.000
192A215PHE00.015-0.00310.869-0.071-0.0710.0000.0000.0000.000
193A216GLY00.1080.04510.0690.0260.0260.0000.0000.0000.000
194A217ALA0-0.0170.00611.0160.0520.0520.0000.0000.0000.000
195A217ALA00.000-0.01812.194-0.086-0.0860.0000.0000.0000.000
196A218ALA0-0.078-0.03513.992-0.016-0.0160.0000.0000.0000.000
197A219GLY00.0230.02010.7490.0410.0410.0000.0000.0000.000
198A221GLU-1-0.885-0.9557.763-0.671-0.6710.0000.0000.0000.000
199A222ALA0-0.070-0.0249.4550.1700.1700.0000.0000.0000.000
200A223GLY0-0.027-0.00811.0200.0720.0720.0000.0000.0000.000
201A224TYR0-0.039-0.00812.0650.0740.0740.0000.0000.0000.000
202A225PRO00.0090.02011.140-0.027-0.0270.0000.0000.0000.000
203A226ASP-1-0.811-0.8826.666-0.749-0.7490.0000.0000.0000.000
204A227ALA00.008-0.0119.4610.1270.1270.0000.0000.0000.000
205A228PHE00.001-0.0185.738-0.088-0.0880.0000.0000.0000.000
206A229THR0-0.020-0.02111.1820.0240.0240.0000.0000.0000.000
207A230ARG10.8410.90913.1760.0480.0480.0000.0000.0000.000
208A231VAL00.0340.01013.580-0.005-0.0050.0000.0000.0000.000
209A232THR0-0.046-0.04416.221-0.006-0.0060.0000.0000.0000.000
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