Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P4NJN

Calculation Name: 1UAI-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UAI

Chain ID: A

ChEMBL ID:

UniProt ID: Q9RB42

Base Structure: X-ray

Registration Date: 2018-02-15

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 222
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2688188.255284
FMO2-HF: Nuclear repulsion 2602693.854947
FMO2-HF: Total energy -85494.400337
FMO2-MP2: Total energy -85744.420119


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE)


Summations of interaction energy for fragment #1(A:1:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
2.1693.2722.908-1.542-2.468-0.006
Interaction energy analysis for fragmet #1(A:1:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.013 / q_NPA : -0.023
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3PRO0-0.025-0.0493.1370.0771.4900.089-0.702-0.801-0.001
4A51CYS0-0.025-0.0123.9510.6670.8700.004-0.044-0.1620.000
5A5ASP-1-0.843-0.9025.974-1.099-1.0990.0000.0000.0000.000
6A6TYR0-0.009-0.0225.9070.2270.2270.0000.0000.0000.000
7A7PRO0-0.034-0.0256.2970.1340.1340.0000.0000.0000.000
8A8ALA00.0160.0116.8270.0650.0650.0000.0000.0000.000
9A9GLN00.0220.0252.3760.419-0.2082.816-0.795-1.393-0.005
10A10GLN0-0.095-0.0573.7720.2880.402-0.001-0.001-0.1120.000
11A11LEU0-0.076-0.0426.874-0.069-0.0690.0000.0000.0000.000
12A12ASP-1-0.817-0.8858.0910.8360.8360.0000.0000.0000.000
13A13LEU0-0.074-0.0589.453-0.163-0.1630.0000.0000.0000.000
14A14THR00.0230.01511.239-0.077-0.0770.0000.0000.0000.000
15A15ASP-1-0.842-0.92812.8740.2280.2280.0000.0000.0000.000
16A16TRP0-0.051-0.03314.152-0.060-0.0600.0000.0000.0000.000
17A17LYS10.9240.97316.045-0.088-0.0880.0000.0000.0000.000
18A18VAL0-0.025-0.01215.8660.0010.0010.0000.0000.0000.000
19A19THR0-0.036-0.02718.026-0.010-0.0100.0000.0000.0000.000
20A20LEU0-0.034-0.02317.750-0.001-0.0010.0000.0000.0000.000
21A21PRO0-0.0050.00121.5890.0000.0000.0000.0000.0000.000
22A22ILE00.0290.02321.063-0.007-0.0070.0000.0000.0000.000
23A23GLY00.0330.01725.1220.0070.0070.0000.0000.0000.000
24A24SER0-0.0140.00426.752-0.002-0.0020.0000.0000.0000.000
25A25SER00.020-0.01530.3280.0030.0030.0000.0000.0000.000
26A26GLY00.0430.02832.7920.0010.0010.0000.0000.0000.000
27A27LYS10.9460.97828.072-0.019-0.0190.0000.0000.0000.000
28A28PRO0-0.021-0.00325.887-0.003-0.0030.0000.0000.0000.000
29A29SER0-0.013-0.01622.4100.0010.0010.0000.0000.0000.000
30A30GLU-1-0.827-0.89820.9500.0740.0740.0000.0000.0000.000
31A31ILE0-0.049-0.01115.498-0.012-0.0120.0000.0000.0000.000
32A32GLU-1-0.895-0.95917.2930.1100.1100.0000.0000.0000.000
33A33GLN00.0230.02611.066-0.031-0.0310.0000.0000.0000.000
34A34PRO00.0650.01513.165-0.024-0.0240.0000.0000.0000.000
35A35ALA0-0.004-0.01112.2360.0080.0080.0000.0000.0000.000
36A36LEU0-0.067-0.04611.915-0.032-0.0320.0000.0000.0000.000
37A37ASP-1-0.912-0.9547.2910.7090.7090.0000.0000.0000.000
38A38THR0-0.061-0.0177.350-0.001-0.0010.0000.0000.0000.000
39A39PHE0-0.0150.0059.439-0.073-0.0730.0000.0000.0000.000
40A40ALA00.023-0.01111.1090.0250.0250.0000.0000.0000.000
41A41THR0-0.071-0.02613.055-0.011-0.0110.0000.0000.0000.000
42A42ALA00.0260.04216.4610.0180.0180.0000.0000.0000.000
43A43PRO0-0.052-0.04217.6970.0040.0040.0000.0000.0000.000
44A44TRP00.018-0.01418.7020.0120.0120.0000.0000.0000.000
45A45PHE00.0750.05912.4040.0130.0130.0000.0000.0000.000
46A46GLN00.0200.00612.435-0.013-0.0130.0000.0000.0000.000
47A47VAL00.0900.0847.6210.0800.0800.0000.0000.0000.000
48A48ASN00.000-0.00710.910-0.050-0.0500.0000.0000.0000.000
49A49ALA00.0450.00512.716-0.032-0.0320.0000.0000.0000.000
50A50LYS10.8890.93314.3890.0270.0270.0000.0000.0000.000
51A52THR0-0.004-0.00910.1820.0270.0270.0000.0000.0000.000
52A53GLY00.0750.02411.2030.0640.0640.0000.0000.0000.000
53A54VAL0-0.0260.01410.307-0.055-0.0550.0000.0000.0000.000
54A55GLN0-0.078-0.03912.657-0.001-0.0010.0000.0000.0000.000
55A56PHE00.0350.01514.917-0.008-0.0080.0000.0000.0000.000
56A57ARG10.8370.91018.2760.0240.0240.0000.0000.0000.000
57A58ALA00.0490.02521.484-0.002-0.0020.0000.0000.0000.000
58A59ALA00.0090.01424.6080.0010.0010.0000.0000.0000.000
59A60VAL00.0010.00627.7760.0030.0030.0000.0000.0000.000
60A61ASN0-0.011-0.03430.0460.0030.0030.0000.0000.0000.000
61A62GLY0-0.034-0.00228.061-0.002-0.0020.0000.0000.0000.000
62A63VAL0-0.020-0.01327.5570.0020.0020.0000.0000.0000.000
63A64THR0-0.012-0.01028.3190.0050.0050.0000.0000.0000.000
64A65THR00.0400.00630.583-0.002-0.0020.0000.0000.0000.000
65A66SER0-0.023-0.01331.9570.0000.0000.0000.0000.0000.000
66A67GLY0-0.011-0.00534.208-0.003-0.0030.0000.0000.0000.000
67A68SER0-0.083-0.02235.341-0.002-0.0020.0000.0000.0000.000
68A69GLY00.0700.02833.8470.0030.0030.0000.0000.0000.000
69A70TYR0-0.0310.00030.650-0.005-0.0050.0000.0000.0000.000
70A71PRO0-0.0020.01527.3660.0040.0040.0000.0000.0000.000
71A72ARG10.8860.92123.442-0.051-0.0510.0000.0000.0000.000
72A73SER0-0.009-0.00618.739-0.001-0.0010.0000.0000.0000.000
73A74GLU-1-0.833-0.91919.7510.0800.0800.0000.0000.0000.000
74A75LEU00.0530.03614.347-0.007-0.0070.0000.0000.0000.000
75A76ARG10.8180.89818.498-0.119-0.1190.0000.0000.0000.000
76A77GLU-1-0.728-0.86119.6820.1630.1630.0000.0000.0000.000
77A78MET0-0.041-0.00118.681-0.033-0.0330.0000.0000.0000.000
78A79THR00.003-0.00820.2970.0180.0180.0000.0000.0000.000
79A80ASP-1-0.913-0.95820.8580.1480.1480.0000.0000.0000.000
80A81GLY00.0410.02316.386-0.004-0.0040.0000.0000.0000.000
81A82GLY0-0.024-0.02416.5890.0040.0040.0000.0000.0000.000
82A83GLU-1-0.976-0.95817.9320.1230.1230.0000.0000.0000.000
83A84GLU-1-0.969-0.97620.7600.0900.0900.0000.0000.0000.000
84A85LYS10.8830.91322.553-0.064-0.0640.0000.0000.0000.000
85A86ALA00.0320.03522.835-0.004-0.0040.0000.0000.0000.000
86A87SER00.000-0.01624.762-0.011-0.0110.0000.0000.0000.000
87A88TRP0-0.026-0.01725.012-0.007-0.0070.0000.0000.0000.000
88A89SER00.0250.00529.683-0.005-0.0050.0000.0000.0000.000
89A90ALA00.0540.03031.9980.0050.0050.0000.0000.0000.000
90A91THR0-0.048-0.03833.977-0.001-0.0010.0000.0000.0000.000
91A92SER0-0.0270.00634.797-0.001-0.0010.0000.0000.0000.000
92A93GLY00.0810.05031.4550.0040.0040.0000.0000.0000.000
93A94THR0-0.090-0.05128.507-0.008-0.0080.0000.0000.0000.000
94A95HIS10.7950.87726.474-0.102-0.1020.0000.0000.0000.000
95A96THR0-0.007-0.00523.490-0.015-0.0150.0000.0000.0000.000
96A97MET00.0250.04420.2320.0180.0180.0000.0000.0000.000
97A98VAL0-0.072-0.04320.014-0.019-0.0190.0000.0000.0000.000
98A99PHE00.0360.01618.3410.0270.0270.0000.0000.0000.000
99A100ARG10.8190.89017.395-0.176-0.1760.0000.0000.0000.000
100A101GLU-1-0.807-0.91517.6240.1150.1150.0000.0000.0000.000
101A102ALA0-0.0040.00119.712-0.009-0.0090.0000.0000.0000.000
102A103PHE00.0600.03521.443-0.001-0.0010.0000.0000.0000.000
103A104ASN0-0.011-0.02620.493-0.002-0.0020.0000.0000.0000.000
104A105HIS0-0.040-0.01823.982-0.010-0.0100.0000.0000.0000.000
105A106LEU0-0.014-0.00226.5630.0060.0060.0000.0000.0000.000
106A107PRO0-0.0140.00929.416-0.004-0.0040.0000.0000.0000.000
107A108GLU-1-0.849-0.94431.591-0.002-0.0020.0000.0000.0000.000
108A109VAL0-0.0310.01035.0900.0020.0020.0000.0000.0000.000
109A110LYS10.8170.89335.390-0.021-0.0210.0000.0000.0000.000
110A111PRO00.0240.02633.0530.0010.0010.0000.0000.0000.000
111A112HIS00.0220.00332.4220.0040.0040.0000.0000.0000.000
112A113LEU0-0.046-0.01224.893-0.002-0.0020.0000.0000.0000.000
113A114VAL0-0.022-0.01026.3670.0010.0010.0000.0000.0000.000
114A115GLY00.0260.01123.424-0.001-0.0010.0000.0000.0000.000
115A116ALA00.0370.02222.1930.0120.0120.0000.0000.0000.000
116A117GLN0-0.062-0.05523.954-0.013-0.0130.0000.0000.0000.000
117A118ILE0-0.0060.01625.3440.0120.0120.0000.0000.0000.000
118A119HIS0-0.048-0.01427.935-0.009-0.0090.0000.0000.0000.000
119A120ASP-1-0.763-0.89229.3590.0660.0660.0000.0000.0000.000
120A121GLY0-0.071-0.04231.6860.0000.0000.0000.0000.0000.000
121A122ASP-1-0.997-0.99333.5870.0440.0440.0000.0000.0000.000
122A123ASP-1-0.935-0.98433.5630.0430.0430.0000.0000.0000.000
123A124ASP-1-0.919-0.93931.1630.0570.0570.0000.0000.0000.000
124A125VAL0-0.008-0.00431.466-0.003-0.0030.0000.0000.0000.000
125A126THR0-0.094-0.07030.309-0.003-0.0030.0000.0000.0000.000
126A127VAL00.0190.00728.3940.0070.0070.0000.0000.0000.000
127A128PHE0-0.032-0.00526.287-0.004-0.0040.0000.0000.0000.000
128A129ARG10.8790.90927.814-0.035-0.0350.0000.0000.0000.000
129A130LEU0-0.0070.00728.374-0.001-0.0010.0000.0000.0000.000
130A131GLU-1-0.801-0.88030.7330.0260.0260.0000.0000.0000.000
131A132GLY00.0080.00633.349-0.001-0.0010.0000.0000.0000.000
132A133THR0-0.009-0.01132.4250.0000.0000.0000.0000.0000.000
133A134SER0-0.028-0.01133.9610.0020.0020.0000.0000.0000.000
134A135LEU0-0.0190.01028.4520.0000.0000.0000.0000.0000.000
135A136TYR00.011-0.00832.215-0.001-0.0010.0000.0000.0000.000
136A137ILE0-0.0130.01230.0800.0040.0040.0000.0000.0000.000
137A138THR0-0.001-0.00232.573-0.002-0.0020.0000.0000.0000.000
138A139LYS10.9510.96934.377-0.040-0.0400.0000.0000.0000.000
139A140GLY00.0110.01835.671-0.003-0.0030.0000.0000.0000.000
140A141ASP-1-0.850-0.92136.4420.0360.0360.0000.0000.0000.000
141A142ASP-1-0.937-0.96338.9010.0320.0320.0000.0000.0000.000
142A143THR00.001-0.03636.0900.0030.0030.0000.0000.0000.000
143A144HIS10.7900.86736.235-0.028-0.0280.0000.0000.0000.000
144A145HIS00.0190.05236.4720.0020.0020.0000.0000.0000.000
145A146LYS10.9330.97135.930-0.044-0.0440.0000.0000.0000.000
146A147LEU00.0040.00735.6720.0020.0020.0000.0000.0000.000
147A148VAL0-0.052-0.03031.0360.0000.0000.0000.0000.0000.000
148A149THR00.005-0.00632.018-0.002-0.0020.0000.0000.0000.000
149A150SER00.0320.02434.7260.0010.0010.0000.0000.0000.000
150A151ASP-1-0.945-0.97935.1320.0200.0200.0000.0000.0000.000
151A152TYR0-0.030-0.02024.8900.0000.0000.0000.0000.0000.000
152A153LYS10.9420.97029.755-0.024-0.0240.0000.0000.0000.000
153A154LEU00.0420.01727.1000.0040.0040.0000.0000.0000.000
154A155ASN0-0.019-0.01823.302-0.003-0.0030.0000.0000.0000.000
155A156THR0-0.0290.00223.2990.0000.0000.0000.0000.0000.000
156A157VAL0-0.0180.00319.3580.0030.0030.0000.0000.0000.000
157A158PHE0-0.062-0.01622.299-0.004-0.0040.0000.0000.0000.000
158A159GLU-1-0.830-0.91221.5720.1540.1540.0000.0000.0000.000
159A160GLY00.0090.01822.653-0.013-0.0130.0000.0000.0000.000
160A161LYS10.9020.95323.187-0.101-0.1010.0000.0000.0000.000
161A162PHE00.0460.03824.878-0.013-0.0130.0000.0000.0000.000
162A163VAL0-0.008-0.01426.3470.0090.0090.0000.0000.0000.000
163A164VAL0-0.0140.00428.900-0.009-0.0090.0000.0000.0000.000
164A165SER00.0410.01830.9110.0050.0050.0000.0000.0000.000
165A166GLY00.0150.00733.646-0.004-0.0040.0000.0000.0000.000
166A167GLY00.0030.00336.437-0.004-0.0040.0000.0000.0000.000
167A168LYS10.8270.90236.135-0.056-0.0560.0000.0000.0000.000
168A169ILE00.0620.04330.9630.0050.0050.0000.0000.0000.000
169A170LYS10.8440.92531.914-0.068-0.0680.0000.0000.0000.000
170A171VAL00.0700.03829.0980.0070.0070.0000.0000.0000.000
171A172TYR0-0.043-0.03528.054-0.008-0.0080.0000.0000.0000.000
172A173TYR00.0640.02527.7480.0040.0040.0000.0000.0000.000
173A174ASN00.019-0.00326.0210.0020.0020.0000.0000.0000.000
174A175GLY00.0130.00827.561-0.004-0.0040.0000.0000.0000.000
175A176VAL0-0.0060.00828.994-0.002-0.0020.0000.0000.0000.000
176A177LEU0-0.050-0.02331.9480.0020.0020.0000.0000.0000.000
177A178GLN0-0.028-0.02132.008-0.008-0.0080.0000.0000.0000.000
178A179THR00.011-0.01534.204-0.005-0.0050.0000.0000.0000.000
179A180THR0-0.014-0.01234.7910.0050.0050.0000.0000.0000.000
180A181ILE00.0220.02334.333-0.005-0.0050.0000.0000.0000.000
181A182SER0-0.048-0.02536.8220.0030.0030.0000.0000.0000.000
182A183HIS00.010-0.00533.720-0.005-0.0050.0000.0000.0000.000
183A184THR0-0.003-0.02037.0200.0030.0030.0000.0000.0000.000
184A185SER00.0280.04836.0590.0010.0010.0000.0000.0000.000
185A186SER0-0.018-0.02434.0860.0050.0050.0000.0000.0000.000
186A187GLY00.0390.02031.654-0.003-0.0030.0000.0000.0000.000
187A188ASN0-0.036-0.00729.599-0.004-0.0040.0000.0000.0000.000
188A189TYR0-0.039-0.01124.6250.0070.0070.0000.0000.0000.000
189A190PHE00.0250.00022.061-0.010-0.0100.0000.0000.0000.000
190A191LYS10.8620.92821.542-0.080-0.0800.0000.0000.0000.000
191A192ALA00.0300.00918.555-0.003-0.0030.0000.0000.0000.000
192A193GLY00.0190.02719.0160.0090.0090.0000.0000.0000.000
193A194ALA0-0.0040.00219.894-0.006-0.0060.0000.0000.0000.000
194A195TYR00.0350.01322.586-0.006-0.0060.0000.0000.0000.000
195A196THR00.028-0.02025.8270.0010.0010.0000.0000.0000.000
196A197GLN0-0.057-0.02228.274-0.003-0.0030.0000.0000.0000.000
197A198ALA00.0250.00331.795-0.002-0.0020.0000.0000.0000.000
198A199ASN00.0660.04032.194-0.001-0.0010.0000.0000.0000.000
199A206CYS0-0.015-0.01834.3840.0000.0000.0000.0000.0000.000
200A201SER0-0.076-0.03236.875-0.001-0.0010.0000.0000.0000.000
201A202ASN00.028-0.00636.950-0.001-0.0010.0000.0000.0000.000
202A203SER0-0.013-0.00335.2880.0000.0000.0000.0000.0000.000
203A204SER0-0.0290.01037.295-0.002-0.0020.0000.0000.0000.000
204A205PRO00.0780.01935.1040.0000.0000.0000.0000.0000.000
205A207SER00.0230.01232.511-0.003-0.0030.0000.0000.0000.000
206A208SER00.0680.02027.3790.0020.0020.0000.0000.0000.000
207A209SER0-0.065-0.04327.647-0.001-0.0010.0000.0000.0000.000
208A210ASN00.0110.02829.5560.0020.0020.0000.0000.0000.000
209A211TYR00.001-0.02724.3880.0010.0010.0000.0000.0000.000
210A212GLY00.0520.05226.4280.0000.0000.0000.0000.0000.000
211A213GLN0-0.020-0.02220.370-0.010-0.0100.0000.0000.0000.000
212A214VAL00.0060.01819.457-0.003-0.0030.0000.0000.0000.000
213A215SER0-0.049-0.03116.759-0.008-0.0080.0000.0000.0000.000
214A216LEU0-0.0030.00014.7310.0010.0010.0000.0000.0000.000
215A217TYR0-0.036-0.03413.4970.0020.0020.0000.0000.0000.000
216A218LYS10.8970.95513.089-0.206-0.2060.0000.0000.0000.000
217A219LEU00.0460.02513.931-0.047-0.0470.0000.0000.0000.000
218A220GLN0-0.004-0.00414.5820.0710.0710.0000.0000.0000.000
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