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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: P7JGK

Calculation Name: 1SAU-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1SAU

Chain ID: A

ChEMBL ID:

UniProt ID: O28055

Base Structure: X-ray

Registration Date: 2018-02-14

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 114
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1012861.694239
FMO2-HF: Nuclear repulsion 965839.943483
FMO2-HF: Total energy -47021.750757
FMO2-MP2: Total energy -47158.529538


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE)


Summations of interaction energy for fragment #1(A:1:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.64-3.2392.87-1.935-1.337-0.015
Interaction energy analysis for fragmet #1(A:1:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.042 / q_NPA : -0.030
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3GLU-1-0.865-0.9203.942-1.536-1.2240.001-0.253-0.0610.000
4A4LEU00.007-0.0016.7900.3260.3260.0000.0000.0000.000
5A5GLU-1-0.890-0.93710.032-0.421-0.4210.0000.0000.0000.000
6A6VAL00.0360.01113.0230.0680.0680.0000.0000.0000.000
7A7LYS10.7230.82115.8580.2110.2110.0000.0000.0000.000
8A8GLY00.0100.01417.7790.0240.0240.0000.0000.0000.000
9A9LYS10.8000.88814.2230.2200.2200.0000.0000.0000.000
10A10LYS10.8910.94810.0510.5340.5340.0000.0000.0000.000
11A11LEU00.0090.0279.5580.0050.0050.0000.0000.0000.000
12A12ARG10.9950.9933.274-2.397-2.1190.039-0.149-0.1690.001
13A13LEU0-0.031-0.0174.4220.7850.947-0.001-0.046-0.1140.000
14A14ASP-1-0.792-0.8922.448-1.223-1.6402.826-1.483-0.926-0.016
15A15GLU-1-0.934-0.9813.6880.7210.7820.006-0.003-0.0640.000
16A16ASP-1-0.970-0.9655.3920.1520.157-0.001-0.001-0.0030.000
17A17GLY00.022-0.0026.682-0.040-0.0400.0000.0000.0000.000
18A18PHE0-0.078-0.0427.562-0.059-0.0590.0000.0000.0000.000
19A19LEU00.0130.0226.790-0.082-0.0820.0000.0000.0000.000
20A20GLN0-0.091-0.0914.9780.3990.3990.0000.0000.0000.000
21A21ASP-1-0.797-0.8737.899-0.334-0.3340.0000.0000.0000.000
22A22TRP0-0.005-0.01910.449-0.050-0.0500.0000.0000.0000.000
23A23GLU-1-0.914-0.96412.867-0.069-0.0690.0000.0000.0000.000
24A24GLU-1-0.840-0.90913.272-0.203-0.2030.0000.0000.0000.000
25A25TRP0-0.070-0.02415.025-0.008-0.0080.0000.0000.0000.000
26A26ASP-1-0.759-0.87616.185-0.175-0.1750.0000.0000.0000.000
27A27GLU-1-0.939-0.97518.754-0.115-0.1150.0000.0000.0000.000
28A28GLU-1-0.824-0.91020.112-0.164-0.1640.0000.0000.0000.000
29A29VAL0-0.035-0.01213.739-0.032-0.0320.0000.0000.0000.000
30A30ALA0-0.035-0.01015.706-0.027-0.0270.0000.0000.0000.000
31A31GLU-1-0.808-0.89217.626-0.172-0.1720.0000.0000.0000.000
32A32ALA0-0.017-0.01315.061-0.004-0.0040.0000.0000.0000.000
33A33LEU0-0.007-0.00211.016-0.027-0.0270.0000.0000.0000.000
34A34ALA0-0.056-0.02714.4410.0110.0110.0000.0000.0000.000
35A35LYS10.8050.88317.4400.1870.1870.0000.0000.0000.000
36A36ASP-1-0.759-0.86410.991-0.659-0.6590.0000.0000.0000.000
37A37THR0-0.041-0.03114.3050.0020.0020.0000.0000.0000.000
38A38ARG10.7330.8578.6931.0461.0460.0000.0000.0000.000
39A39PHE0-0.0260.0066.8500.0410.0410.0000.0000.0000.000
40A40SER00.0320.00612.5830.0670.0670.0000.0000.0000.000
41A41PRO0-0.0180.01816.332-0.020-0.0200.0000.0000.0000.000
42A42GLN0-0.050-0.04019.5160.0110.0110.0000.0000.0000.000
43A43PRO0-0.0070.00919.2850.0030.0030.0000.0000.0000.000
44A44ILE00.0020.00320.1930.0170.0170.0000.0000.0000.000
45A45GLU-1-0.933-0.95722.233-0.111-0.1110.0000.0000.0000.000
46A46LEU0-0.024-0.01920.4310.0120.0120.0000.0000.0000.000
47A47THR00.040-0.00224.8200.0040.0040.0000.0000.0000.000
48A48GLU-1-0.900-0.96227.692-0.046-0.0460.0000.0000.0000.000
49A49GLU-1-0.827-0.89229.426-0.036-0.0360.0000.0000.0000.000
50A50HIS00.0150.02523.7580.0050.0050.0000.0000.0000.000
51A51TRP00.0550.02721.9300.0060.0060.0000.0000.0000.000
52A52LYS10.8570.93725.9190.0390.0390.0000.0000.0000.000
53A53ILE0-0.033-0.01523.3450.0060.0060.0000.0000.0000.000
54A54ILE00.0360.01920.3030.0080.0080.0000.0000.0000.000
55A55ARG10.9860.99022.2450.0530.0530.0000.0000.0000.000
56A56TYR00.0030.01924.6630.0090.0090.0000.0000.0000.000
57A57LEU0-0.026-0.02619.0870.0090.0090.0000.0000.0000.000
58A58ARG10.8610.93515.6640.0910.0910.0000.0000.0000.000
59A59ASP-1-0.900-0.95121.032-0.022-0.0220.0000.0000.0000.000
60A60TYR0-0.103-0.05422.9610.0100.0100.0000.0000.0000.000
61A61PHE00.0170.01115.5960.0080.0080.0000.0000.0000.000
62A62ILE0-0.0090.00219.3510.0100.0100.0000.0000.0000.000
63A63LYS10.8470.93321.9410.0020.0020.0000.0000.0000.000
64A64TYR0-0.039-0.04024.1530.0020.0020.0000.0000.0000.000
65A65GLY00.0010.01620.6600.0080.0080.0000.0000.0000.000
66A66VAL0-0.035-0.00818.7940.0190.0190.0000.0000.0000.000
67A67ALA00.0500.02217.909-0.019-0.0190.0000.0000.0000.000
68A68PRO0-0.0110.00219.8550.0070.0070.0000.0000.0000.000
69A69PRO00.0230.01222.6310.0000.0000.0000.0000.0000.000
70A70VAL00.1150.03223.607-0.011-0.0110.0000.0000.0000.000
71A71ARG10.9340.96725.681-0.041-0.0410.0000.0000.0000.000
72A72MET0-0.076-0.04727.102-0.004-0.0040.0000.0000.0000.000
73A73LEU00.0780.05022.482-0.005-0.0050.0000.0000.0000.000
74A74VAL00.0140.01227.194-0.005-0.0050.0000.0000.0000.000
75A75LYS10.8480.91830.214-0.016-0.0160.0000.0000.0000.000
76A76HIS00.0360.02128.7190.0020.0020.0000.0000.0000.000
77A85CYS0-0.0230.01829.475-0.004-0.0040.0000.0000.0000.000
78A78LYS10.9100.95131.349-0.004-0.0040.0000.0000.0000.000
79A79LYS10.8930.94534.5340.0020.0020.0000.0000.0000.000
80A80GLU-1-0.869-0.92432.350-0.020-0.0200.0000.0000.0000.000
81A81VAL0-0.067-0.02430.195-0.004-0.0040.0000.0000.0000.000
82A82ARG10.8790.88633.6120.0210.0210.0000.0000.0000.000
83A83PRO00.0200.02135.8510.0020.0020.0000.0000.0000.000
84A84ASP-1-0.849-0.88337.888-0.013-0.0130.0000.0000.0000.000
85A86ASN00.0290.00232.5800.0020.0020.0000.0000.0000.000
86A87LEU00.0500.00926.413-0.003-0.0030.0000.0000.0000.000
87A88GLN00.0230.01328.580-0.002-0.0020.0000.0000.0000.000
88A89TYR0-0.082-0.08229.700-0.003-0.0030.0000.0000.0000.000
89A90ILE00.029-0.00424.956-0.004-0.0040.0000.0000.0000.000
90A91TYR00.0220.01623.106-0.002-0.0020.0000.0000.0000.000
91A92LYS10.8980.96925.7080.0290.0290.0000.0000.0000.000
92A93LEU0-0.066-0.02425.796-0.006-0.0060.0000.0000.0000.000
93A94PHE00.0240.01020.592-0.010-0.0100.0000.0000.0000.000
94A95PRO00.0420.03721.3700.0140.0140.0000.0000.0000.000
95A96GLN0-0.093-0.07415.5840.0220.0220.0000.0000.0000.000
96A97GLY00.012-0.00119.6860.0170.0170.0000.0000.0000.000
97A98PRO0-0.044-0.03319.799-0.009-0.0090.0000.0000.0000.000
98A99ALA00.0390.01117.088-0.005-0.0050.0000.0000.0000.000
99A100LYS10.9170.95011.2990.0380.0380.0000.0000.0000.000
100A101ASP-1-0.725-0.84314.741-0.124-0.1240.0000.0000.0000.000
101A102ALA0-0.0080.00316.902-0.016-0.0160.0000.0000.0000.000
102A103CYS0-0.055-0.03715.819-0.005-0.0050.0000.0000.0000.000
103A104ARG10.8630.94011.2730.2090.2090.0000.0000.0000.000
104A105ILE00.0090.00913.719-0.033-0.0330.0000.0000.0000.000
105A106ALA0-0.0120.00116.136-0.012-0.0120.0000.0000.0000.000
106A107GLY00.0350.00713.3550.0100.0100.0000.0000.0000.000
107A108LEU0-0.035-0.01413.7170.0160.0160.0000.0000.0000.000
108A109PRO00.0330.02910.071-0.020-0.0200.0000.0000.0000.000
109A110LYS10.8230.8867.064-0.701-0.7010.0000.0000.0000.000
110A111PRO00.0460.04411.951-0.037-0.0370.0000.0000.0000.000
111A112THR00.011-0.01214.803-0.009-0.0090.0000.0000.0000.000
112A113GLY00.0280.00916.664-0.015-0.0150.0000.0000.0000.000
113A114CYS0-0.101-0.02218.933-0.020-0.0200.0000.0000.0000.000
114A115VAL-1-0.874-0.94320.5650.0520.0520.0000.0000.0000.000