Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

tag_button

FMODB ID: Q18YY

Calculation Name: 4FLE-A-Xray321

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4FLE

Chain ID: A

ChEMBL ID:

UniProt ID: A1JQU0

Base Structure: X-ray

Registration Date: 2021-09-07

Reference: C. Watanabe, S. Koyama, K. Kamisaka, D. Takaya, T. Honma et. al., Interaction energy analysis of Apo structure dataset on FMODB, To be pubulished.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 1.20200129
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 197
LigandCharge
Software ABINIT-MP - Open Ver.1 Rev. 15 / 20190524
Total energy (hartree)
FMO2-HF: Electronic energy -2215103.712452
FMO2-HF: Nuclear repulsion 2138869.330124
FMO2-HF: Total energy -76234.382328
FMO2-MP2: Total energy -76458.998501


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ACE )


Summations of interaction energy for fragment #1(A:2:ACE )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.9480.7140.021-0.742-0.941-0.001
Interaction energy analysis for fragmet #1(A:2:ACE )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.007 / q_NPA : -0.014
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4THR 00.0290.0233.8430.8341.715-0.006-0.448-0.4270.000
4A5LEU 0-0.008-0.0137.2530.0630.0630.0000.0000.0000.000
5A6LEU 00.0080.00510.4470.1190.1190.0000.0000.0000.000
6A7TYR 00.009-0.01513.4250.0300.0300.0000.0000.0000.000
7A8ILE 00.0270.01016.6010.0240.0240.0000.0000.0000.000
8A9HIS 00.002-0.00119.9340.0070.0070.0000.0000.0000.000
9A10GLY 00.0370.00923.049-0.001-0.0010.0000.0000.0000.000
10A11PHE 00.0750.02026.6490.0010.0010.0000.0000.0000.000
11A12ASN 00.0200.02829.8820.0030.0030.0000.0000.0000.000
12A13SER 0-0.0040.02026.1820.0020.0020.0000.0000.0000.000
13A14SER 00.0430.00324.5670.0040.0040.0000.0000.0000.000
14A15PRO 00.0240.00719.990-0.005-0.0050.0000.0000.0000.000
15A16SER 0-0.021-0.00721.2490.0030.0030.0000.0000.0000.000
16A17SER 0-0.050-0.00422.5080.0070.0070.0000.0000.0000.000
17A18ALA 00.0680.02022.598-0.003-0.0030.0000.0000.0000.000
18A19LYS 10.8710.93421.4900.1080.1080.0000.0000.0000.000
19A20ALA 00.0320.02918.532-0.013-0.0130.0000.0000.0000.000
20A21THR 00.0200.00717.808-0.005-0.0050.0000.0000.0000.000
21A22THR 0-0.019-0.02319.0060.0040.0040.0000.0000.0000.000
22A23PHE 00.0310.01914.3020.0020.0020.0000.0000.0000.000
23A24LYS 10.9780.98213.9750.0130.0130.0000.0000.0000.000
24A25SER 0-0.041-0.01914.4280.0260.0260.0000.0000.0000.000
25A26TRP 00.0440.02213.1470.0160.0160.0000.0000.0000.000
26A27LEU 00.011-0.0129.8840.0200.0200.0000.0000.0000.000
27A28GLN 0-0.0260.01211.0520.0180.0180.0000.0000.0000.000
28A29GLN 0-0.048-0.02312.5450.0400.0400.0000.0000.0000.000
29A30HIS 0-0.078-0.05212.8980.0390.0390.0000.0000.0000.000
30A31HIS 0-0.020-0.0077.786-0.010-0.0100.0000.0000.0000.000
31A32PRO 00.0270.0177.974-0.060-0.0600.0000.0000.0000.000
32A33HIS 0-0.024-0.0173.319-0.1730.0090.013-0.054-0.1410.000
33A34ILE 0-0.0280.0103.624-0.2040.1550.014-0.192-0.181-0.001
34A35GLU -1-0.901-0.9505.5950.0940.0940.0000.0000.0000.000
35A36MET 0-0.032-0.0087.576-0.187-0.1870.0000.0000.0000.000
36A37GLN 00.0220.00311.0440.0430.0430.0000.0000.0000.000
37A38ILE 0-0.041-0.01612.986-0.018-0.0180.0000.0000.0000.000
38A39PRO 00.0150.01516.0910.0330.0330.0000.0000.0000.000
39A40GLN 0-0.027-0.02818.7060.0040.0040.0000.0000.0000.000
40A41LEU 0-0.015-0.02320.7980.0010.0010.0000.0000.0000.000
41A42PRO 00.0160.02923.8670.0090.0090.0000.0000.0000.000
42A43PRO 0-0.021-0.01727.122-0.006-0.0060.0000.0000.0000.000
43A44TYR 0-0.008-0.00129.9820.0010.0010.0000.0000.0000.000
44A45PRO 00.014-0.00528.569-0.005-0.0050.0000.0000.0000.000
45A46ALA 00.0570.03427.399-0.008-0.0080.0000.0000.0000.000
46A47GLU -1-0.853-0.93826.751-0.066-0.0660.0000.0000.0000.000
47A48ALA 0-0.019-0.02324.276-0.007-0.0070.0000.0000.0000.000
48A49ALA 0-0.013-0.01422.726-0.016-0.0160.0000.0000.0000.000
49A50GLU -1-0.926-0.94922.218-0.095-0.0950.0000.0000.0000.000
50A51MET 0-0.035-0.00919.782-0.004-0.0040.0000.0000.0000.000
51A52LEU 0-0.045-0.03318.304-0.019-0.0190.0000.0000.0000.000
52A53GLU -1-0.898-0.95817.318-0.183-0.1830.0000.0000.0000.000
53A54SER 0-0.010-0.00917.478-0.012-0.0120.0000.0000.0000.000
54A55ILE 0-0.034-0.00512.984-0.007-0.0070.0000.0000.0000.000
55A56VAL 0-0.012-0.01012.901-0.056-0.0560.0000.0000.0000.000
56A57MET 0-0.023-0.01012.781-0.069-0.0690.0000.0000.0000.000
57A58ASP -1-0.935-0.95012.070-0.159-0.1590.0000.0000.0000.000
58A59LYS 10.8460.9057.2660.2930.2930.0000.0000.0000.000
59A60ALA 0-0.0160.0018.798-0.203-0.2030.0000.0000.0000.000
60A61GLY 0-0.051-0.0079.967-0.003-0.0030.0000.0000.0000.000
61A62GLN 0-0.056-0.0284.429-0.227-0.1180.000-0.027-0.0820.000
62A63SER 00.0250.0175.2260.1430.2740.000-0.021-0.1100.000
63A64ILE 00.0410.0186.431-0.461-0.4610.0000.0000.0000.000
64A65GLY 00.0240.0199.1360.1560.1560.0000.0000.0000.000
65A66ILE 0-0.037-0.01711.9190.0180.0180.0000.0000.0000.000
66A67VAL 0-0.0060.01314.9620.0280.0280.0000.0000.0000.000
67A68GLY 00.0370.01517.5230.0100.0100.0000.0000.0000.000
68A69SER 0-0.028-0.00320.9000.0080.0080.0000.0000.0000.000
69A70SER 00.0180.00124.0470.0040.0040.0000.0000.0000.000
70A71LEU 0-0.002-0.00527.074-0.006-0.0060.0000.0000.0000.000
71A72GLY 00.0560.02823.541-0.004-0.0040.0000.0000.0000.000
72A73GLY 0-0.003-0.00522.764-0.019-0.0190.0000.0000.0000.000
73A74TYR 0-0.029-0.01724.151-0.008-0.0080.0000.0000.0000.000
74A75PHE 00.001-0.01022.527-0.003-0.0030.0000.0000.0000.000
75A76ALA 00.0260.00819.826-0.012-0.0120.0000.0000.0000.000
76A77THR 00.0180.01620.575-0.019-0.0190.0000.0000.0000.000
77A78TRP 00.0050.00622.295-0.009-0.0090.0000.0000.0000.000
78A79LEU 0-0.005-0.01617.932-0.003-0.0030.0000.0000.0000.000
79A80SER 0-0.071-0.03318.4720.0000.0000.0000.0000.0000.000
80A81GLN 00.0240.01419.5440.0030.0030.0000.0000.0000.000
81A82ARG 10.9060.96222.0330.1470.1470.0000.0000.0000.000
82A83PHE 0-0.037-0.03217.4800.0120.0120.0000.0000.0000.000
83A84SER 0-0.021-0.00417.321-0.024-0.0240.0000.0000.0000.000
84A85ILE 0-0.019-0.00513.345-0.042-0.0420.0000.0000.0000.000
85A86PRO 00.0190.02713.2800.0620.0620.0000.0000.0000.000
86A87ALA 00.0440.00115.296-0.034-0.0340.0000.0000.0000.000
87A88VAL 0-0.030-0.00517.2830.0310.0310.0000.0000.0000.000
88A89VAL 0-0.016-0.00619.4230.0020.0020.0000.0000.0000.000
89A90VAL 0-0.001-0.02221.6460.0120.0120.0000.0000.0000.000
90A91ASN 00.006-0.01424.3740.0040.0040.0000.0000.0000.000
91A92PRO 0-0.012-0.00125.7700.0040.0040.0000.0000.0000.000
92A93ALA 00.0030.00227.6510.0080.0080.0000.0000.0000.000
93A94VAL 00.0290.00729.513-0.005-0.0050.0000.0000.0000.000
94A95ARG 10.8730.93131.6760.0710.0710.0000.0000.0000.000
95A96PRO 00.0260.02330.5090.0060.0060.0000.0000.0000.000
96A97PHE 00.001-0.00133.5240.0050.0050.0000.0000.0000.000
97A98GLU -1-0.890-0.94635.883-0.058-0.0580.0000.0000.0000.000
98A99LEU 00.0440.02534.9410.0020.0020.0000.0000.0000.000
99A100LEU 0-0.005-0.01932.5850.0020.0020.0000.0000.0000.000
100A101SER 0-0.038-0.01836.9860.0030.0030.0000.0000.0000.000
101A102ASP -1-0.907-0.94540.290-0.044-0.0440.0000.0000.0000.000
102A103TYR 0-0.104-0.05734.8620.0000.0000.0000.0000.0000.000
103A104LEU 0-0.050-0.01339.1460.0000.0000.0000.0000.0000.000
104A105GLY 00.0320.02340.7930.0020.0020.0000.0000.0000.000
105A106GLU -1-0.990-0.99940.136-0.030-0.0300.0000.0000.0000.000
106A107ASN 0-0.036-0.01336.400-0.001-0.0010.0000.0000.0000.000
107A108GLN 00.008-0.02435.8780.0040.0040.0000.0000.0000.000
108A109ASN 0-0.0040.02528.6740.0020.0020.0000.0000.0000.000
109A110PRO 0-0.036-0.02332.3860.0040.0040.0000.0000.0000.000
110A111TYR 00.011-0.00527.8320.0020.0020.0000.0000.0000.000
111A112THR 0-0.0280.00027.6670.0040.0040.0000.0000.0000.000
112A113GLY 0-0.0020.00430.3720.0040.0040.0000.0000.0000.000
113A114GLN 0-0.011-0.00929.6500.0020.0020.0000.0000.0000.000
114A115LYS 10.9380.96633.6640.0210.0210.0000.0000.0000.000
115A116TYR 0-0.023-0.03433.426-0.001-0.0010.0000.0000.0000.000
116A117VAL 00.0320.01436.7590.0010.0010.0000.0000.0000.000
117A118LEU 0-0.0290.00234.710-0.002-0.0020.0000.0000.0000.000
118A119GLU -1-0.836-0.95837.640-0.037-0.0370.0000.0000.0000.000
119A120SER 00.053-0.00138.281-0.003-0.0030.0000.0000.0000.000
120A121ARG 10.9150.97035.7500.0440.0440.0000.0000.0000.000
121A122HIS 00.0700.06434.340-0.004-0.0040.0000.0000.0000.000
122A123ILE 00.0130.01634.104-0.006-0.0060.0000.0000.0000.000
123A124TYR 0-0.063-0.02735.540-0.003-0.0030.0000.0000.0000.000
124A125ASP -1-0.848-0.94031.663-0.070-0.0700.0000.0000.0000.000
125A126LEU 0-0.018-0.00329.413-0.007-0.0070.0000.0000.0000.000
126A127LYS 10.8920.95031.5010.0600.0600.0000.0000.0000.000
127A128ALA 0-0.029-0.01432.641-0.002-0.0020.0000.0000.0000.000
128A129MET 0-0.049-0.00625.649-0.001-0.0010.0000.0000.0000.000
129A130GLN 00.0120.00628.911-0.007-0.0070.0000.0000.0000.000
130A131ILE 00.0230.02526.1240.0030.0030.0000.0000.0000.000
131A132GLU -1-0.966-0.97230.367-0.076-0.0760.0000.0000.0000.000
132A133LYS 10.9190.95231.5180.1010.1010.0000.0000.0000.000
133A134LEU 00.0020.00726.205-0.003-0.0030.0000.0000.0000.000
134A135GLU -1-0.881-0.94825.187-0.139-0.1390.0000.0000.0000.000
135A136SER 0-0.019-0.01322.190-0.001-0.0010.0000.0000.0000.000
136A137PRO 00.009-0.01122.806-0.019-0.0190.0000.0000.0000.000
137A138ASP -1-0.900-0.94121.874-0.177-0.1770.0000.0000.0000.000
138A139LEU 0-0.066-0.01117.284-0.022-0.0220.0000.0000.0000.000
139A140LEU 0-0.004-0.00618.984-0.024-0.0240.0000.0000.0000.000
140A141TRP 0-0.064-0.03218.6590.0080.0080.0000.0000.0000.000
141A142LEU 0-0.026-0.00322.237-0.004-0.0040.0000.0000.0000.000
142A143LEU 0-0.0130.00321.5030.0070.0070.0000.0000.0000.000
143A144GLN 00.0450.00025.569-0.004-0.0040.0000.0000.0000.000
144A145GLN 00.0320.03529.1300.0070.0070.0000.0000.0000.000
145A146THR 0-0.015-0.02531.8410.0010.0010.0000.0000.0000.000
146A147GLY 0-0.046-0.01935.0270.0030.0030.0000.0000.0000.000
147A148ASP -1-0.836-0.90632.454-0.075-0.0750.0000.0000.0000.000
148A149GLU -1-0.922-0.96034.907-0.045-0.0450.0000.0000.0000.000
149A150VAL 0-0.090-0.03334.0940.0030.0030.0000.0000.0000.000
150A151LEU 0-0.060-0.03631.2420.0000.0000.0000.0000.0000.000
151A152ASP -1-0.839-0.91535.361-0.061-0.0610.0000.0000.0000.000
152A153TYR 00.043-0.00733.917-0.002-0.0020.0000.0000.0000.000
153A154ARG 10.8990.96434.3660.0500.0500.0000.0000.0000.000
154A155GLN 00.0150.00934.814-0.004-0.0040.0000.0000.0000.000
155A156ALA 00.0360.02030.149-0.004-0.0040.0000.0000.0000.000
156A157VAL 0-0.016-0.00731.220-0.005-0.0050.0000.0000.0000.000
157A158ALA 00.0010.00132.879-0.002-0.0020.0000.0000.0000.000
158A159TYR 0-0.049-0.04627.999-0.004-0.0040.0000.0000.0000.000
159A160TYR 0-0.001-0.03325.5430.0000.0000.0000.0000.0000.000
160A161THR 0-0.0090.01429.059-0.003-0.0030.0000.0000.0000.000
161A162PRO 0-0.096-0.04328.7600.0010.0010.0000.0000.0000.000
162A163CYS 0-0.0070.01824.973-0.010-0.0100.0000.0000.0000.000
163A164ARG 10.9681.00719.8710.1990.1990.0000.0000.0000.000
164A165GLN 0-0.037-0.04925.5530.0000.0000.0000.0000.0000.000
165A166THR 0-0.046-0.01225.526-0.001-0.0010.0000.0000.0000.000
166A167VAL 0-0.003-0.00127.561-0.002-0.0020.0000.0000.0000.000
167A168GLU -1-0.826-0.86428.348-0.086-0.0860.0000.0000.0000.000
168A169SER 00.005-0.00632.0480.0000.0000.0000.0000.0000.000
169A170GLY 0-0.0090.00935.0030.0010.0010.0000.0000.0000.000
170A171GLY 00.0350.01832.901-0.004-0.0040.0000.0000.0000.000
171A172ASN 00.0440.00031.7450.0000.0000.0000.0000.0000.000
172A173HIS 00.0380.01330.661-0.007-0.0070.0000.0000.0000.000
173A174ALA 0-0.043-0.00428.855-0.008-0.0080.0000.0000.0000.000
174A175PHE 00.0380.03125.488-0.010-0.0100.0000.0000.0000.000
175A176VAL 0-0.047-0.03227.4390.0010.0010.0000.0000.0000.000
176A177GLY 00.0510.02926.963-0.002-0.0020.0000.0000.0000.000
177A178PHE 00.006-0.01019.183-0.005-0.0050.0000.0000.0000.000
178A179ASP -1-0.859-0.94021.089-0.089-0.0890.0000.0000.0000.000
179A180HIS 0-0.046-0.00720.950-0.002-0.0020.0000.0000.0000.000
180A181TYR 0-0.060-0.10920.425-0.009-0.0090.0000.0000.0000.000
181A182PHE 0-0.0070.02116.384-0.026-0.0260.0000.0000.0000.000
182A183SER 00.0280.00215.135-0.047-0.0470.0000.0000.0000.000
183A184PRO 00.0270.01015.477-0.033-0.0330.0000.0000.0000.000
184A185ILE 00.0110.02714.394-0.027-0.0270.0000.0000.0000.000
185A186VAL 00.0060.0149.898-0.050-0.0500.0000.0000.0000.000
186A187THR 0-0.090-0.05811.794-0.070-0.0700.0000.0000.0000.000
187A188PHE 0-0.021-0.01613.940-0.020-0.0200.0000.0000.0000.000
188A189LEU 0-0.059-0.02411.944-0.011-0.0110.0000.0000.0000.000
189A190GLY 00.0180.02711.216-0.095-0.0950.0000.0000.0000.000
190A191LEU 0-0.035-0.0217.318-0.190-0.1900.0000.0000.0000.000
191A192ALA 00.0070.0096.133-0.322-0.3220.0000.0000.0000.000
192A193THR 00.008-0.0096.7170.0600.0600.0000.0000.0000.000
193A194ALA 00.038-0.0039.3760.1040.1040.0000.0000.0000.000
194A195LEU 0-0.076-0.0148.7340.0200.0200.0000.0000.0000.000
195A196GLU -1-0.842-0.9298.9890.2350.2350.0000.0000.0000.000
196A197HIS 0-0.104-0.03010.9740.0720.0720.0000.0000.0000.000
197A198NME 0-0.047-0.02314.012-0.027-0.0270.0000.0000.0000.000