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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: X1JLZ

Calculation Name: 1G61-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1G61

Chain ID: A

ChEMBL ID:

UniProt ID: Q60357

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 227
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2678217.608336
FMO2-HF: Nuclear repulsion 2594263.906002
FMO2-HF: Total energy -83953.702334
FMO2-MP2: Total energy -84201.874756


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2002:ACE)


Summations of interaction energy for fragment #1(A:2002:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.875-0.56-0.012-0.667-0.637-0.002
Interaction energy analysis for fragmet #1(A:2002:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.036 / q_NPA : -0.029
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A2004ILE00.0230.0253.8400.2431.558-0.012-0.667-0.637-0.002
4A2005ILE0-0.0110.0145.2210.5550.5550.0000.0000.0000.000
5A2006ARG10.8510.9247.537-0.281-0.2810.0000.0000.0000.000
6A2007LYS10.7760.86110.8880.0830.0830.0000.0000.0000.000
7A2008TYR0-0.059-0.05813.7290.0010.0010.0000.0000.0000.000
8A2009PHE00.0390.01515.413-0.003-0.0030.0000.0000.0000.000
9A2010SER00.0420.01219.4600.0050.0050.0000.0000.0000.000
10A2011GLY0-0.015-0.00920.8920.0030.0030.0000.0000.0000.000
11A2012ILE0-0.025-0.00121.8840.0070.0070.0000.0000.0000.000
12A2013PRO00.0460.01918.851-0.011-0.0110.0000.0000.0000.000
13A2014THR0-0.027-0.00518.851-0.008-0.0080.0000.0000.0000.000
14A2015ILE00.0300.00415.3740.0010.0010.0000.0000.0000.000
15A2016GLY00.0370.02518.671-0.012-0.0120.0000.0000.0000.000
16A2017VAL0-0.016-0.01720.2080.0040.0040.0000.0000.0000.000
17A2018LEU0-0.060-0.03021.1130.0040.0040.0000.0000.0000.000
18A2019ALA0-0.0190.00118.8210.0000.0000.0000.0000.0000.000
19A2020LEU00.0340.03119.9140.0010.0010.0000.0000.0000.000
20A2021THR0-0.040-0.02715.158-0.006-0.0060.0000.0000.0000.000
21A2022THR00.0410.05118.4120.0040.0040.0000.0000.0000.000
22A2023GLU-1-0.713-0.84015.426-0.518-0.5180.0000.0000.0000.000
23A2024GLU-1-0.916-0.95516.729-0.292-0.2920.0000.0000.0000.000
24A2025ILE0-0.022-0.01219.1850.0070.0070.0000.0000.0000.000
25A2026THR00.0230.00716.589-0.028-0.0280.0000.0000.0000.000
26A2027LEU0-0.038-0.00219.0140.0190.0190.0000.0000.0000.000
27A2028LEU00.0350.00717.351-0.003-0.0030.0000.0000.0000.000
28A2029PRO00.0480.01020.9650.0110.0110.0000.0000.0000.000
29A2030ILE00.0240.00523.452-0.002-0.0020.0000.0000.0000.000
30A2031PHE0-0.071-0.03022.6910.0020.0020.0000.0000.0000.000
31A2032LEU0-0.0340.00018.2690.0080.0080.0000.0000.0000.000
32A2033ASP-1-0.833-0.90119.591-0.044-0.0440.0000.0000.0000.000
33A2034LYS10.9300.93819.8690.0630.0630.0000.0000.0000.000
34A2035ASP-1-0.889-0.92716.606-0.044-0.0440.0000.0000.0000.000
35A2036ASP-1-0.794-0.89615.428-0.075-0.0750.0000.0000.0000.000
36A2037VAL0-0.079-0.04215.118-0.041-0.0410.0000.0000.0000.000
37A2038ASN0-0.027-0.02715.038-0.049-0.0490.0000.0000.0000.000
38A2039GLU-1-0.806-0.88711.031-0.099-0.0990.0000.0000.0000.000
39A2040VAL0-0.042-0.02810.579-0.110-0.1100.0000.0000.0000.000
40A2041SER0-0.062-0.03512.054-0.084-0.0840.0000.0000.0000.000
41A2042GLU-1-0.975-0.9888.483-0.345-0.3450.0000.0000.0000.000
42A2043VAL0-0.036-0.0205.868-0.176-0.1760.0000.0000.0000.000
43A2044LEU0-0.037-0.0108.317-0.194-0.1940.0000.0000.0000.000
44A2045GLU-1-0.897-0.9459.267-0.961-0.9610.0000.0000.0000.000
45A2046THR0-0.043-0.01812.6890.0580.0580.0000.0000.0000.000
46A2047LYS10.9120.95616.0950.2120.2120.0000.0000.0000.000
47A2048CYS00.0090.01016.709-0.007-0.0070.0000.0000.0000.000
48A2049LEU00.0090.01819.7740.0190.0190.0000.0000.0000.000
49A2050GLN0-0.080-0.03722.438-0.004-0.0040.0000.0000.0000.000
50A2051THR0-0.001-0.03224.3820.0100.0100.0000.0000.0000.000
51A2052ASN00.0080.02727.036-0.004-0.0040.0000.0000.0000.000
52A2053ILE0-0.007-0.01627.717-0.004-0.0040.0000.0000.0000.000
53A2054GLY0-0.019-0.01031.1550.0020.0020.0000.0000.0000.000
54A2055GLY00.0110.00533.9890.0040.0040.0000.0000.0000.000
55A2056SER0-0.109-0.04530.9040.0030.0030.0000.0000.0000.000
56A2057SER00.0540.00926.315-0.005-0.0050.0000.0000.0000.000
57A2058LEU0-0.034-0.01225.858-0.007-0.0070.0000.0000.0000.000
58A2059VAL00.0510.00923.9800.0000.0000.0000.0000.0000.000
59A2060GLY00.0040.00923.083-0.004-0.0040.0000.0000.0000.000
60A2061SER0-0.002-0.01623.9340.0030.0030.0000.0000.0000.000
61A2062LEU0-0.078-0.03327.1120.0050.0050.0000.0000.0000.000
62A2063SER0-0.070-0.02826.8240.0010.0010.0000.0000.0000.000
63A2064VAL00.0330.02025.435-0.005-0.0050.0000.0000.0000.000
64A2065ALA0-0.018-0.01023.5360.0080.0080.0000.0000.0000.000
65A2066ASN00.006-0.00822.789-0.008-0.0080.0000.0000.0000.000
66A2067LYS10.9140.96022.9080.1790.1790.0000.0000.0000.000
67A2068TYR0-0.047-0.02324.1340.0070.0070.0000.0000.0000.000
68A2069GLY00.0880.06127.3350.0110.0110.0000.0000.0000.000
69A2070LEU0-0.064-0.02826.413-0.012-0.0120.0000.0000.0000.000
70A2071LEU00.0100.01128.7420.0100.0100.0000.0000.0000.000
71A2072LEU00.0170.00029.794-0.004-0.0040.0000.0000.0000.000
72A2073PRO00.0500.03331.7190.0050.0050.0000.0000.0000.000
73A2074LYS10.9310.94734.7570.0470.0470.0000.0000.0000.000
74A2075ILE0-0.066-0.03434.5000.0030.0030.0000.0000.0000.000
75A2076VAL0-0.0420.00233.3490.0010.0010.0000.0000.0000.000
76A2077GLU-1-0.899-0.95935.596-0.046-0.0460.0000.0000.0000.000
77A2078ASP-1-0.906-0.96136.529-0.054-0.0540.0000.0000.0000.000
78A2079GLU-1-0.945-0.97435.851-0.053-0.0530.0000.0000.0000.000
79A2080GLU-1-0.723-0.84732.446-0.069-0.0690.0000.0000.0000.000
80A2081LEU0-0.011-0.00832.475-0.007-0.0070.0000.0000.0000.000
81A2082ASP-1-0.897-0.94233.747-0.065-0.0650.0000.0000.0000.000
82A2083ARG10.8220.90327.0520.0840.0840.0000.0000.0000.000
83A2084ILE0-0.003-0.00728.380-0.007-0.0070.0000.0000.0000.000
84A2085LYS10.9720.98329.6320.0690.0690.0000.0000.0000.000
85A2086ASN0-0.053-0.02131.808-0.005-0.0050.0000.0000.0000.000
86A2087PHE00.0320.01322.3100.0000.0000.0000.0000.0000.000
87A2088LEU00.0180.01526.242-0.007-0.0070.0000.0000.0000.000
88A2089LYS10.9660.98028.4360.0740.0740.0000.0000.0000.000
89A2090GLU-1-0.995-0.99728.573-0.089-0.0890.0000.0000.0000.000
90A2091ASN0-0.107-0.05124.151-0.012-0.0120.0000.0000.0000.000
91A2092ASN0-0.086-0.04026.216-0.003-0.0030.0000.0000.0000.000
92A2093LEU0-0.036-0.01823.431-0.006-0.0060.0000.0000.0000.000
93A2094ASP-1-0.962-0.97627.708-0.093-0.0930.0000.0000.0000.000
94A2095LEU0-0.0130.00225.857-0.004-0.0040.0000.0000.0000.000
95A2096ASN0-0.024-0.02329.9250.0120.0120.0000.0000.0000.000
96A2097VAL0-0.079-0.04230.855-0.002-0.0020.0000.0000.0000.000
97A2098GLU-1-0.874-0.93532.844-0.065-0.0650.0000.0000.0000.000
98A2099ILE0-0.071-0.03533.966-0.002-0.0020.0000.0000.0000.000
99A2100ILE00.0870.05133.9100.0040.0040.0000.0000.0000.000
100A2101LYS10.9100.95336.7440.0530.0530.0000.0000.0000.000
101A2102SER00.0190.00636.5700.0030.0030.0000.0000.0000.000
102A2103LYS10.8580.89939.2060.0370.0370.0000.0000.0000.000
103A2104ASN00.0070.01535.356-0.001-0.0010.0000.0000.0000.000
104A2105THR00.0230.00634.975-0.002-0.0020.0000.0000.0000.000
105A2106ALA00.0180.02530.979-0.004-0.0040.0000.0000.0000.000
106A2107LEU00.042-0.00330.315-0.001-0.0010.0000.0000.0000.000
107A2108GLY00.0400.03126.635-0.003-0.0030.0000.0000.0000.000
108A2109ASN00.016-0.00726.322-0.010-0.0100.0000.0000.0000.000
109A2110LEU0-0.073-0.03028.3310.0030.0030.0000.0000.0000.000
110A2111ILE0-0.0110.00427.6740.0040.0040.0000.0000.0000.000
111A2112LEU00.0000.01822.073-0.007-0.0070.0000.0000.0000.000
112A2113THR00.001-0.01923.9850.0120.0120.0000.0000.0000.000
113A2114ASN00.0080.01220.650-0.002-0.0020.0000.0000.0000.000
114A2115ASP-1-0.813-0.90821.417-0.214-0.2140.0000.0000.0000.000
115A2116LYS10.7400.85120.4840.2120.2120.0000.0000.0000.000
116A2117GLY00.0610.04325.5130.0120.0120.0000.0000.0000.000
117A2118ALA0-0.017-0.01225.939-0.012-0.0120.0000.0000.0000.000
118A2119LEU00.0280.03127.7900.0080.0080.0000.0000.0000.000
119A2120ILE0-0.032-0.02429.231-0.003-0.0030.0000.0000.0000.000
120A2121SER00.0730.04131.9000.0070.0070.0000.0000.0000.000
121A2122PRO00.028-0.00533.8360.0010.0010.0000.0000.0000.000
122A2123GLU-1-0.972-0.98136.935-0.046-0.0460.0000.0000.0000.000
123A2124LEU0-0.012-0.01033.4460.0020.0020.0000.0000.0000.000
124A2125LYS10.9871.00437.4530.0450.0450.0000.0000.0000.000
125A2126ASP-1-0.988-0.99939.372-0.045-0.0450.0000.0000.0000.000
126A2127PHE0-0.042-0.03237.4870.0020.0020.0000.0000.0000.000
127A2128LYS10.8580.92436.1670.0630.0630.0000.0000.0000.000
128A2129LYS10.8780.93936.6270.0580.0580.0000.0000.0000.000
129A2130ASP-1-0.878-0.94137.324-0.064-0.0640.0000.0000.0000.000
130A2131ILE0-0.032-0.02231.714-0.005-0.0050.0000.0000.0000.000
131A2132GLU-1-0.851-0.91932.840-0.075-0.0750.0000.0000.0000.000
132A2133ASP-1-0.849-0.91433.779-0.074-0.0740.0000.0000.0000.000
133A2134SER0-0.080-0.03231.903-0.005-0.0050.0000.0000.0000.000
134A2135LEU00.022-0.00727.428-0.006-0.0060.0000.0000.0000.000
135A2136ASN0-0.025-0.00529.011-0.002-0.0020.0000.0000.0000.000
136A2137VAL0-0.065-0.02326.922-0.005-0.0050.0000.0000.0000.000
137A2138GLU-1-0.904-0.94430.384-0.081-0.0810.0000.0000.0000.000
138A2139VAL0-0.026-0.01830.520-0.006-0.0060.0000.0000.0000.000
139A2140GLU-1-0.887-0.93831.881-0.063-0.0630.0000.0000.0000.000
140A2141ILE0-0.078-0.04832.705-0.002-0.0020.0000.0000.0000.000
141A2142GLY00.003-0.00433.3120.0020.0020.0000.0000.0000.000
142A2143THR0-0.037-0.02931.9300.0000.0000.0000.0000.0000.000
143A2144ILE00.0150.00625.688-0.003-0.0030.0000.0000.0000.000
144A2145ALA00.0010.01028.2870.0030.0030.0000.0000.0000.000
145A2146GLU-1-0.936-0.96630.190-0.026-0.0260.0000.0000.0000.000
146A2147LEU0-0.080-0.03329.1440.0020.0020.0000.0000.0000.000
147A2148PRO00.025-0.00231.487-0.005-0.0050.0000.0000.0000.000
148A2149THR0-0.048-0.02329.380-0.003-0.0030.0000.0000.0000.000
149A2150VAL00.0550.01227.767-0.002-0.0020.0000.0000.0000.000
150A2151GLY00.0300.04324.918-0.007-0.0070.0000.0000.0000.000
151A2152SER0-0.016-0.02623.829-0.005-0.0050.0000.0000.0000.000
152A2153ASN0-0.067-0.04223.9610.0050.0050.0000.0000.0000.000
153A2154ALA00.013-0.00221.5410.0070.0070.0000.0000.0000.000
154A2155VAL00.0210.03015.698-0.002-0.0020.0000.0000.0000.000
155A2156VAL0-0.025-0.00918.6980.0020.0020.0000.0000.0000.000
156A2157THR00.0790.06614.244-0.003-0.0030.0000.0000.0000.000
157A2158ASN0-0.006-0.02817.4350.0550.0550.0000.0000.0000.000
158A2159LYS10.8880.96310.8090.6000.6000.0000.0000.0000.000
159A2160GLY00.0470.00715.8000.0230.0230.0000.0000.0000.000
160A2161CYS0-0.045-0.01016.6690.0020.0020.0000.0000.0000.000
161A2162LEU00.0470.02915.6500.0130.0130.0000.0000.0000.000
162A2163THR00.027-0.00718.345-0.002-0.0020.0000.0000.0000.000
163A2164HIS00.0800.03821.5040.0080.0080.0000.0000.0000.000
164A2165PRO00.0010.00523.1510.0000.0000.0000.0000.0000.000
165A2166LEU0-0.063-0.05524.3740.0050.0050.0000.0000.0000.000
166A2167VAL00.0030.01525.6130.0010.0010.0000.0000.0000.000
167A2168GLU-1-0.952-0.96827.410-0.026-0.0260.0000.0000.0000.000
168A2169ASP-1-0.903-0.96627.944-0.038-0.0380.0000.0000.0000.000
169A2170ASP-1-0.919-0.95329.012-0.046-0.0460.0000.0000.0000.000
170A2171GLU-1-0.842-0.92928.340-0.062-0.0620.0000.0000.0000.000
171A2172LEU00.003-0.01422.796-0.009-0.0090.0000.0000.0000.000
172A2173GLU-1-0.945-0.96525.860-0.085-0.0850.0000.0000.0000.000
173A2174PHE0-0.030-0.02127.976-0.006-0.0060.0000.0000.0000.000
174A2175LEU00.0210.00324.727-0.006-0.0060.0000.0000.0000.000
175A2176LYS10.9380.98921.8530.0880.0880.0000.0000.0000.000
176A2177SER0-0.033-0.01624.573-0.010-0.0100.0000.0000.0000.000
177A2178LEU00.0250.01827.467-0.005-0.0050.0000.0000.0000.000
178A2179PHE0-0.0030.00122.521-0.006-0.0060.0000.0000.0000.000
179A2180LYS10.8700.92923.1400.0850.0850.0000.0000.0000.000
180A2181VAL0-0.0300.01419.115-0.016-0.0160.0000.0000.0000.000
181A2182GLU-1-0.934-0.97918.591-0.116-0.1160.0000.0000.0000.000
182A2183TYR0-0.087-0.03214.536-0.002-0.0020.0000.0000.0000.000
183A2184ILE0-0.004-0.01217.626-0.009-0.0090.0000.0000.0000.000
184A2185GLY00.0010.00618.4920.0160.0160.0000.0000.0000.000
185A2186LYS10.8880.97519.3640.0230.0230.0000.0000.0000.000
186A2187GLY0-0.003-0.01618.9740.0130.0130.0000.0000.0000.000
187A2188THR0-0.070-0.05419.483-0.007-0.0070.0000.0000.0000.000
188A2189ALA00.0210.01116.897-0.003-0.0030.0000.0000.0000.000
189A2190ASN0-0.017-0.03717.3030.0120.0120.0000.0000.0000.000
190A2191LYS10.9130.94718.906-0.054-0.0540.0000.0000.0000.000
191A2192GLY00.0070.00620.8110.0000.0000.0000.0000.0000.000
192A2193THR0-0.071-0.02821.770-0.005-0.0050.0000.0000.0000.000
193A2194THR00.0470.00022.027-0.003-0.0030.0000.0000.0000.000
194A2195SER0-0.0050.01723.670-0.004-0.0040.0000.0000.0000.000
195A2196VAL00.0310.00418.672-0.003-0.0030.0000.0000.0000.000
196A2197GLY00.0450.04219.219-0.016-0.0160.0000.0000.0000.000
197A2198ALA0-0.027-0.02120.952-0.008-0.0080.0000.0000.0000.000
198A2199CYS0-0.106-0.05418.0910.0120.0120.0000.0000.0000.000
199A2200ILE0-0.006-0.00613.6570.0060.0060.0000.0000.0000.000
200A2201ILE00.0000.02314.2020.0170.0170.0000.0000.0000.000
201A2202ALA00.004-0.01312.664-0.051-0.0510.0000.0000.0000.000
202A2203ASN0-0.022-0.02212.233-0.018-0.0180.0000.0000.0000.000
203A2204SER0-0.126-0.09912.246-0.070-0.0700.0000.0000.0000.000
204A2205LYS10.8150.9159.8150.5370.5370.0000.0000.0000.000
205A2206GLY00.0720.0397.632-0.540-0.5400.0000.0000.0000.000
206A2207ALA0-0.032-0.0248.0480.3360.3360.0000.0000.0000.000
207A2208VAL0-0.0030.0048.760-0.051-0.0510.0000.0000.0000.000
208A2209VAL0-0.027-0.01010.7110.0370.0370.0000.0000.0000.000
209A2210GLY00.0510.02212.8740.0320.0320.0000.0000.0000.000
210A2211GLY00.011-0.00514.4560.0220.0220.0000.0000.0000.000
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