Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: X6GLZ

Calculation Name: 3US6-A-Xray27

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3US6

Chain ID: A

ChEMBL ID:

UniProt ID: B7FGU6

Base Structure: X-ray

Registration Date: 2018-07-26

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 237
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1675657.838874
FMO2-HF: Nuclear repulsion 1607845.17877
FMO2-HF: Total energy -67812.660104
FMO2-MP2: Total energy -68005.123895


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE)


Summations of interaction energy for fragment #1(A:1:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
3.0514.657-0.013-0.811-0.783-0.001
Interaction energy analysis for fragmet #1(A:1:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.025 / q_NPA : -0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3VAL00.1140.0613.8170.1031.632-0.013-0.779-0.738-0.001
4A4GLY0-0.015-0.0075.3840.2410.2410.0000.0000.0000.000
5A5GLN00.0600.0256.7220.3130.3130.0000.0000.0000.000
6A6MET00.0350.0246.4560.2940.2940.0000.0000.0000.000
7A7ARG10.8830.9349.6180.3760.3760.0000.0000.0000.000
8A8ARG10.8440.9068.5680.8580.8580.0000.0000.0000.000
9A9GLN00.0490.01911.5800.0310.0310.0000.0000.0000.000
10A10TRP00.0050.00313.9850.0420.0420.0000.0000.0000.000
11A11VAL0-0.0130.00015.7590.0410.0410.0000.0000.0000.000
12A12ASP-1-0.752-0.83817.221-0.262-0.2620.0000.0000.0000.000
13A13TYR0-0.015-0.02418.2290.0310.0310.0000.0000.0000.000
14A14ILE00.0660.05419.8800.0240.0240.0000.0000.0000.000
15A15LYS10.8990.95721.4450.1830.1830.0000.0000.0000.000
16A16SER0-0.043-0.03722.9500.0140.0140.0000.0000.0000.000
17A17MET00.0030.00723.9700.0090.0090.0000.0000.0000.000
18A18PHE0-0.0040.00425.0600.0110.0110.0000.0000.0000.000
19A19MET0-0.057-0.02627.0890.0050.0050.0000.0000.0000.000
20A20GLU-1-0.794-0.87227.936-0.117-0.1170.0000.0000.0000.000
21A21GLY00.0140.03230.6870.0060.0060.0000.0000.0000.000
22A22PHE0-0.028-0.01928.5680.0050.0050.0000.0000.0000.000
23A23LEU00.0280.01825.6490.0040.0040.0000.0000.0000.000
24A24ASP-1-0.727-0.84129.816-0.055-0.0550.0000.0000.0000.000
25A25GLY00.016-0.00530.571-0.002-0.0020.0000.0000.0000.000
26A26GLN00.0010.02131.6280.0030.0030.0000.0000.0000.000
27A27PHE0-0.039-0.01923.9450.0020.0020.0000.0000.0000.000
28A28LEU0-0.010-0.00725.9200.0000.0000.0000.0000.0000.000
29A29GLN00.012-0.00128.2310.0060.0060.0000.0000.0000.000
30A30LEU0-0.044-0.01628.3750.0050.0050.0000.0000.0000.000
31A31GLN00.0420.00022.8110.0060.0060.0000.0000.0000.000
32A32GLN0-0.045-0.01326.0800.0010.0010.0000.0000.0000.000
33A33LEU0-0.031-0.00228.4040.0050.0050.0000.0000.0000.000
34A34GLN00.0060.05322.1160.0050.0050.0000.0000.0000.000
35A35ASP-1-0.765-0.80223.5340.0040.0040.0000.0000.0000.000
36A36GLU-1-0.964-0.99821.4020.0500.0500.0000.0000.0000.000
37A37ASN0-0.085-0.03722.8120.0120.0120.0000.0000.0000.000
38A38ASN0-0.093-0.06225.6060.0020.0020.0000.0000.0000.000
39A39PRO00.0610.03620.928-0.009-0.0090.0000.0000.0000.000
40A40GLU-1-0.844-0.91220.535-0.028-0.0280.0000.0000.0000.000
41A41PHE00.0090.01023.920-0.005-0.0050.0000.0000.0000.000
42A42VAL0-0.003-0.01724.202-0.002-0.0020.0000.0000.0000.000
43A43PHE00.0270.01422.667-0.004-0.0040.0000.0000.0000.000
44A44GLU-1-0.918-0.95825.084-0.012-0.0120.0000.0000.0000.000
45A45VAL0-0.012-0.00228.3700.0000.0000.0000.0000.0000.000
46A46VAL0-0.020-0.02326.613-0.001-0.0010.0000.0000.0000.000
47A47SER00.0050.01027.347-0.001-0.0010.0000.0000.0000.000
48A48LEU0-0.0120.01029.8020.0010.0010.0000.0000.0000.000
49A49PHE00.0210.01531.7640.0010.0010.0000.0000.0000.000
50A50PHE0-0.017-0.01827.009-0.001-0.0010.0000.0000.0000.000
51A51ASP-1-0.816-0.88432.833-0.032-0.0320.0000.0000.0000.000
52A52ASP-1-0.891-0.94935.232-0.027-0.0270.0000.0000.0000.000
53A53SER00.005-0.00235.5380.0010.0010.0000.0000.0000.000
54A54GLU-1-0.923-0.91034.592-0.041-0.0410.0000.0000.0000.000
55A55ARG10.9620.98637.9130.0260.0260.0000.0000.0000.000
56A56ILE00.0510.03840.8820.0010.0010.0000.0000.0000.000
57A57LEU0-0.012-0.01137.7490.0000.0000.0000.0000.0000.000
58A58LYS10.8870.95540.2180.0320.0320.0000.0000.0000.000
59A59ASP-1-0.850-0.89743.304-0.023-0.0230.0000.0000.0000.000
60A60LEU0-0.035-0.01943.5740.0010.0010.0000.0000.0000.000
61A61SER0-0.025-0.02043.8800.0000.0000.0000.0000.0000.000
62A62PHE0-0.0160.00046.4270.0010.0010.0000.0000.0000.000
63A63ALA00.0300.03349.2600.0010.0010.0000.0000.0000.000
64A64VAL00.013-0.00148.1250.0010.0010.0000.0000.0000.000
65A65ASP-1-0.844-0.89548.550-0.031-0.0310.0000.0000.0000.000
66A66GLN0-0.0010.04851.7930.0020.0020.0000.0000.0000.000
67A67GLN0-0.028-0.01455.2150.0000.0000.0000.0000.0000.000
68A68SER0-0.003-0.00158.4710.0000.0000.0000.0000.0000.000
69A69ILE00.0280.03052.6750.0000.0000.0000.0000.0000.000
70A70ASP-1-0.836-0.91155.247-0.018-0.0180.0000.0000.0000.000
71A71PHE00.053-0.00854.212-0.001-0.0010.0000.0000.0000.000
72A72LYS11.0071.01153.8750.0160.0160.0000.0000.0000.000
73A73LYS10.9190.97451.1310.0210.0210.0000.0000.0000.000
74A74VAL00.0270.01049.037-0.001-0.0010.0000.0000.0000.000
75A75ASP-1-0.772-0.87549.044-0.026-0.0260.0000.0000.0000.000
76A76ALA00.0010.00249.128-0.001-0.0010.0000.0000.0000.000
77A77HIS00.006-0.00146.1790.0000.0000.0000.0000.0000.000
78A78VAL00.0510.02744.661-0.001-0.0010.0000.0000.0000.000
79A79HIS0-0.029-0.00644.217-0.003-0.0030.0000.0000.0000.000
80A80GLN0-0.042-0.00842.3230.0010.0010.0000.0000.0000.000
81A81PHE00.0240.02336.969-0.001-0.0010.0000.0000.0000.000
82A82LYS10.9460.97939.7220.0300.0300.0000.0000.0000.000
83A83GLY0-0.0130.00140.050-0.002-0.0020.0000.0000.0000.000
84A84SER00.050-0.00637.621-0.001-0.0010.0000.0000.0000.000
85A85SER00.0270.00335.432-0.002-0.0020.0000.0000.0000.000
86A86ALA0-0.023-0.02335.048-0.003-0.0030.0000.0000.0000.000
87A87SER0-0.073-0.03435.757-0.001-0.0010.0000.0000.0000.000
88A88ILE00.0240.00630.1800.0000.0000.0000.0000.0000.000
89A89GLY00.0170.01730.705-0.005-0.0050.0000.0000.0000.000
90A90ALA0-0.0040.01332.004-0.005-0.0050.0000.0000.0000.000
91A91GLN00.0110.02132.9640.0010.0010.0000.0000.0000.000
92A92ARG10.8750.92432.9140.0800.0800.0000.0000.0000.000
93A93VAL00.0240.01934.2880.0030.0030.0000.0000.0000.000
94A94LYS10.9380.98136.9240.0430.0430.0000.0000.0000.000
95A95ASN00.024-0.00238.7100.0050.0050.0000.0000.0000.000
96A96SER00.0260.02139.1970.0020.0020.0000.0000.0000.000
97A97CYS0-0.0270.00340.4580.0030.0030.0000.0000.0000.000
98A98VAL0-0.032-0.02143.1560.0030.0030.0000.0000.0000.000
99A99ALA00.0030.00044.5850.0020.0020.0000.0000.0000.000
100A100PHE00.041-0.02344.4960.0010.0010.0000.0000.0000.000
101A101ARG10.8020.87347.0110.0270.0270.0000.0000.0000.000
102A102ASN00.0460.03049.1460.0020.0020.0000.0000.0000.000
103A103PHE00.014-0.00348.2230.0010.0010.0000.0000.0000.000
104A104CYS0-0.063-0.02551.0590.0010.0010.0000.0000.0000.000
105A105GLU-1-0.967-0.96853.015-0.022-0.0220.0000.0000.0000.000
106A106GLU-1-0.887-0.92455.101-0.023-0.0230.0000.0000.0000.000
107A107GLN0-0.065-0.01256.0140.0010.0010.0000.0000.0000.000
108A108ASN00.0110.02254.4020.0000.0000.0000.0000.0000.000
109A109ILE00.0750.01853.903-0.001-0.0010.0000.0000.0000.000
110A110ASP-1-0.802-0.89152.747-0.029-0.0290.0000.0000.0000.000
111A111ALA0-0.053-0.02950.770-0.002-0.0020.0000.0000.0000.000
112A112CYS00.0010.00349.231-0.002-0.0020.0000.0000.0000.000
113A113ARG10.9010.95848.1420.0250.0250.0000.0000.0000.000
114A114ARG10.9060.95646.5970.0320.0320.0000.0000.0000.000
115A115CYS00.0060.04744.556-0.002-0.0020.0000.0000.0000.000
116A116LEU00.0070.03443.223-0.002-0.0020.0000.0000.0000.000
117A117GLN0-0.0200.00740.100-0.001-0.0010.0000.0000.0000.000
118A118GLN00.020-0.00240.265-0.005-0.0050.0000.0000.0000.000
119A119VAL00.0360.01938.890-0.003-0.0030.0000.0000.0000.000
120A120LYS10.9700.99037.8860.0420.0420.0000.0000.0000.000
121A121GLN0-0.044-0.02635.8100.0000.0000.0000.0000.0000.000
122A122GLU-1-0.719-0.82734.421-0.074-0.0740.0000.0000.0000.000
123A123TYR0-0.035-0.01833.269-0.005-0.0050.0000.0000.0000.000
124A124LEU00.0170.00532.108-0.003-0.0030.0000.0000.0000.000
125A125LEU0-0.0380.00130.046-0.007-0.0070.0000.0000.0000.000
126A126VAL00.018-0.00128.415-0.009-0.0090.0000.0000.0000.000
127A127LYS10.9060.97827.6040.0560.0560.0000.0000.0000.000
128A128ASN0-0.035-0.03826.147-0.007-0.0070.0000.0000.0000.000
129A129LYS10.8160.91223.8830.1160.1160.0000.0000.0000.000
130A130LEU00.0330.00122.737-0.014-0.0140.0000.0000.0000.000
131A131GLU-1-0.741-0.83922.451-0.087-0.0870.0000.0000.0000.000
132A132THR0-0.050-0.02218.564-0.010-0.0100.0000.0000.0000.000
133A133LEU0-0.009-0.00918.146-0.025-0.0250.0000.0000.0000.000
134A134LEU00.0190.01517.955-0.012-0.0120.0000.0000.0000.000
135A135ARG10.9030.93016.7990.1380.1380.0000.0000.0000.000
136A136LEU0-0.0020.01912.109-0.006-0.0060.0000.0000.0000.000
137A137GLU-1-0.770-0.86113.197-0.129-0.1290.0000.0000.0000.000
138A138GLN00.0090.01514.2780.0270.0270.0000.0000.0000.000
139A139GLN0-0.013-0.00610.292-0.024-0.0240.0000.0000.0000.000
140A140ILE0-0.044-0.0279.5930.0090.0090.0000.0000.0000.000
141A141VAL00.0310.01610.1250.0670.0670.0000.0000.0000.000
142A142ALA0-0.0010.02011.3500.0610.0610.0000.0000.0000.000
143A143ALA0-0.078-0.0426.0550.0770.0770.0000.0000.0000.000
144A144GLY00.0070.0057.3220.2170.2170.0000.0000.0000.000
145A145GLY0-0.050-0.0159.8580.0060.0060.0000.0000.0000.000
146A146SER0-0.002-0.00910.4080.0020.0020.0000.0000.0000.000
147A147ILE00.0290.01513.281-0.056-0.0560.0000.0000.0000.000
148A148PRO0-0.070-0.04114.1940.0210.0210.0000.0000.0000.000
149A149MET0-0.0190.01516.668-0.001-0.0010.0000.0000.0000.000
150A150NME00.0410.03919.9580.0110.0110.0000.0000.0000.000
151A201HOH0-0.024-0.02132.1420.0020.0020.0000.0000.0000.000
152A202HOH0-0.021-0.00324.284-0.005-0.0050.0000.0000.0000.000
153A203HOH0-0.001-0.01433.023-0.001-0.0010.0000.0000.0000.000
154A204HOH00.015-0.00322.075-0.004-0.0040.0000.0000.0000.000
155A205HOH00.0080.00325.3950.0020.0020.0000.0000.0000.000
156A206HOH0-0.049-0.03838.0850.0010.0010.0000.0000.0000.000
157A208HOH0-0.039-0.02339.7690.0000.0000.0000.0000.0000.000
158A210HOH0-0.025-0.01839.0580.0010.0010.0000.0000.0000.000
159A211HOH0-0.035-0.03630.642-0.002-0.0020.0000.0000.0000.000
160A213HOH00.0580.04623.9430.0020.0020.0000.0000.0000.000
161A214HOH0-0.0030.00154.0400.0000.0000.0000.0000.0000.000
162A217HOH0-0.024-0.02228.2100.0010.0010.0000.0000.0000.000
163A218HOH0-0.010-0.00821.9930.0010.0010.0000.0000.0000.000
164A219HOH0-0.036-0.02543.5140.0010.0010.0000.0000.0000.000
165A220HOH0-0.052-0.04526.8900.0010.0010.0000.0000.0000.000
166A221HOH0-0.043-0.05754.2400.0000.0000.0000.0000.0000.000
167A222HOH0-0.044-0.03714.8020.0100.0100.0000.0000.0000.000
168A223HOH0-0.027-0.01237.4720.0000.0000.0000.0000.0000.000
169A224HOH0-0.024-0.02442.6100.0000.0000.0000.0000.0000.000
170A225HOH0-0.029-0.01946.3490.0000.0000.0000.0000.0000.000
171A226HOH0-0.023-0.01730.8490.0000.0000.0000.0000.0000.000
172A227HOH0-0.032-0.03220.8460.0020.0020.0000.0000.0000.000
173A229HOH0-0.064-0.05335.6850.0010.0010.0000.0000.0000.000
174A230HOH0-0.023-0.02936.366-0.001-0.0010.0000.0000.0000.000
175A231HOH00.0410.02516.758-0.008-0.0080.0000.0000.0000.000
176A232HOH0-0.017-0.01312.082-0.017-0.0170.0000.0000.0000.000
177A235HOH0-0.028-0.01638.0990.0000.0000.0000.0000.0000.000
178A237HOH0-0.055-0.03559.8600.0000.0000.0000.0000.0000.000
179A239HOH0-0.018-0.01053.569-0.001-0.0010.0000.0000.0000.000
180A242HOH0-0.052-0.04046.1970.0000.0000.0000.0000.0000.000
181A243HOH0-0.045-0.02617.8410.0020.0020.0000.0000.0000.000
182A245HOH0-0.044-0.02919.7020.0030.0030.0000.0000.0000.000
183A246HOH0-0.047-0.04645.7550.0000.0000.0000.0000.0000.000
184A249HOH0-0.067-0.05533.6220.0010.0010.0000.0000.0000.000
185A250HOH0-0.045-0.03734.5370.0010.0010.0000.0000.0000.000
186A252HOH0-0.003-0.00738.6140.0000.0000.0000.0000.0000.000
187A254HOH0-0.039-0.02427.6940.0010.0010.0000.0000.0000.000
188A255HOH00.0370.01625.3990.0000.0000.0000.0000.0000.000
189A256HOH0-0.027-0.01619.9350.0040.0040.0000.0000.0000.000
190A257HOH0-0.044-0.04715.558-0.024-0.0240.0000.0000.0000.000
191A258HOH0-0.012-0.00956.0840.0000.0000.0000.0000.0000.000
192A261HOH0-0.050-0.04820.1860.0080.0080.0000.0000.0000.000
193A264HOH0-0.040-0.03631.3430.0030.0030.0000.0000.0000.000
194A265HOH0-0.016-0.01756.2170.0000.0000.0000.0000.0000.000
195A266HOH0-0.022-0.01634.3480.0010.0010.0000.0000.0000.000
196A267HOH0-0.047-0.02925.070-0.001-0.0010.0000.0000.0000.000
197A270HOH0-0.009-0.01657.2020.0000.0000.0000.0000.0000.000
198A273HOH00.0320.02441.2210.0010.0010.0000.0000.0000.000
199A274HOH0-0.017-0.01646.1980.0000.0000.0000.0000.0000.000
200A276HOH0-0.013-0.00224.642-0.003-0.0030.0000.0000.0000.000
201A280HOH0-0.040-0.03421.0720.0010.0010.0000.0000.0000.000
202A281HOH0-0.049-0.02316.0680.0020.0020.0000.0000.0000.000
203A282HOH0-0.059-0.04156.4680.0000.0000.0000.0000.0000.000
204A286HOH00.006-0.00136.2760.0010.0010.0000.0000.0000.000
205A287HOH0-0.052-0.03818.2890.0030.0030.0000.0000.0000.000
206A289HOH00.0470.02522.444-0.003-0.0030.0000.0000.0000.000
207A290HOH0-0.058-0.05940.667-0.001-0.0010.0000.0000.0000.000
208A293HOH00.0000.00449.295-0.001-0.0010.0000.0000.0000.000
209A294HOH00.0220.02034.9450.0000.0000.0000.0000.0000.000
210A296HOH00.0310.0163.996-0.451-0.4310.000-0.011-0.0090.000
211A297HOH0-0.021-0.02649.4550.0000.0000.0000.0000.0000.000
212A298HOH0-0.047-0.04956.7250.0000.0000.0000.0000.0000.000
213A301HOH00.0140.00815.805-0.009-0.0090.0000.0000.0000.000
214A302HOH0-0.043-0.02738.0900.0000.0000.0000.0000.0000.000
215A304HOH0-0.049-0.02653.3660.0000.0000.0000.0000.0000.000
216A307HOH00.0280.01931.8120.0020.0020.0000.0000.0000.000
217A309HOH00.0010.01048.1940.0000.0000.0000.0000.0000.000
218A316HOH0-0.013-0.00920.9220.0030.0030.0000.0000.0000.000
219A317HOH0-0.077-0.08528.3980.0010.0010.0000.0000.0000.000
220A318HOH00.0130.01119.0360.0050.0050.0000.0000.0000.000
221A320HOH00.0190.00949.6980.0000.0000.0000.0000.0000.000
222A322HOH0-0.003-0.03422.813-0.002-0.0020.0000.0000.0000.000
223A323HOH0-0.070-0.04758.4110.0000.0000.0000.0000.0000.000
224A326HOH00.0250.00940.1310.0000.0000.0000.0000.0000.000
225A334HOH0-0.028-0.01410.4970.0320.0320.0000.0000.0000.000
226A336HOH0-0.059-0.04225.701-0.004-0.0040.0000.0000.0000.000
227A339HOH00.0180.01558.5250.0000.0000.0000.0000.0000.000
228A341HOH0-0.011-0.0129.6550.0540.0540.0000.0000.0000.000
229A342HOH00.0400.0544.1670.6160.6730.000-0.021-0.0360.000
230A343HOH00.0220.0216.5140.1960.1960.0000.0000.0000.000
231A345HOH0-0.034-0.04746.9620.0000.0000.0000.0000.0000.000
232A346HOH0-0.030-0.03253.8090.0000.0000.0000.0000.0000.000
233A347HOH0-0.019-0.03227.7770.0010.0010.0000.0000.0000.000
234A348HOH0-0.027-0.02229.520-0.001-0.0010.0000.0000.0000.000
235A357HOH0-0.028-0.03935.5280.0000.0000.0000.0000.0000.000
236A358HOH00.0110.02035.3690.0000.0000.0000.0000.0000.000
237A359HOH0-0.005-0.04333.470-0.002-0.0020.0000.0000.0000.000