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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XM93Z

Calculation Name: 3CJW-A-Xray28

Preferred Name: COUP transcription factor 2

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 3CJW

Chain ID: A

ChEMBL ID: CHEMBL1961790

UniProt ID: P24468

Base Structure: X-ray

Registration Date: 2018-07-26

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 212
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2467105.704087
FMO2-HF: Nuclear repulsion 2384366.433097
FMO2-HF: Total energy -82739.27099
FMO2-MP2: Total energy -82978.877519


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:171:GLY)


Summations of interaction energy for fragment #1(A:171:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.2550.9089.256-5.652-5.767-0.001
Interaction energy analysis for fragmet #1(A:171:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.036 / q_NPA : -0.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A173ASN00.0150.0213.499-0.5131.360-0.006-0.933-0.934-0.001
4A174SER00.0410.0232.2830.6361.5822.501-1.898-1.5490.007
5A175HIS00.0060.0143.3082.8992.468-0.0030.878-0.4440.000
6A176SER0-0.035-0.0145.6470.0350.0350.0000.0000.0000.000
7A177TYR0-0.015-0.0152.038-1.559-2.2356.761-3.582-2.503-0.007
8A178LEU00.0050.0133.961-1.342-0.9890.003-0.096-0.2610.000
9A179SER00.0120.0145.653-1.068-1.0680.0000.0000.0000.000
10A180GLY00.004-0.0037.235-0.386-0.3860.0000.0000.0000.000
11A181TYR0-0.025-0.0496.254-0.448-0.4480.0000.0000.0000.000
12A182ILE00.0720.0448.195-0.325-0.3250.0000.0000.0000.000
13A183SER0-0.027-0.02111.157-0.228-0.2280.0000.0000.0000.000
14A184LEU0-0.061-0.0379.593-0.169-0.1690.0000.0000.0000.000
15A185LEU0-0.0130.00511.568-0.117-0.1170.0000.0000.0000.000
16A186LEU0-0.007-0.00414.060-0.078-0.0780.0000.0000.0000.000
17A187ARG10.9110.95715.717-0.434-0.4340.0000.0000.0000.000
18A188ALA00.0020.01516.587-0.041-0.0410.0000.0000.0000.000
19A189GLU-1-0.791-0.90418.3680.2300.2300.0000.0000.0000.000
20A190PRO00.0060.02221.131-0.006-0.0060.0000.0000.0000.000
21A191TYR0-0.047-0.05924.550-0.014-0.0140.0000.0000.0000.000
22A192PRO0-0.048-0.00525.2250.0070.0070.0000.0000.0000.000
23A193THR0-0.0100.00623.3430.0120.0120.0000.0000.0000.000
24A194NME0-0.0360.01819.8210.0180.0180.0000.0000.0000.000
25A206ACE00.006-0.00742.7740.0010.0010.0000.0000.0000.000
26A207MET0-0.013-0.03142.737-0.004-0.0040.0000.0000.0000.000
27A208GLY0-0.0130.00242.9560.0020.0020.0000.0000.0000.000
28A209ILE0-0.043-0.01140.8580.0000.0000.0000.0000.0000.000
29A210GLU-1-0.769-0.87035.5270.1020.1020.0000.0000.0000.000
30A211ASN00.0070.00639.9960.0010.0010.0000.0000.0000.000
31A212ILE00.0470.00938.3380.0030.0030.0000.0000.0000.000
32A213CYS0-0.005-0.01537.8980.0020.0020.0000.0000.0000.000
33A214GLU-1-0.895-0.94637.5020.0770.0770.0000.0000.0000.000
34A215LEU0-0.0190.01633.6910.0060.0060.0000.0000.0000.000
35A216ALA0-0.027-0.02933.5170.0070.0070.0000.0000.0000.000
36A217ALA00.0570.01532.7550.0040.0040.0000.0000.0000.000
37A218ARG10.9240.98930.487-0.111-0.1110.0000.0000.0000.000
38A219MET0-0.052-0.02028.9930.0130.0130.0000.0000.0000.000
39A220LEU00.0010.00627.7790.0090.0090.0000.0000.0000.000
40A221PHE00.019-0.01527.6580.0040.0040.0000.0000.0000.000
41A222SER0-0.039-0.01925.5150.0090.0090.0000.0000.0000.000
42A223ALA00.0000.00323.3910.0170.0170.0000.0000.0000.000
43A224VAL00.0080.00322.6100.0100.0100.0000.0000.0000.000
44A225GLU-1-0.809-0.90423.1180.1570.1570.0000.0000.0000.000
45A226TRP00.001-0.00216.127-0.005-0.0050.0000.0000.0000.000
46A227ALA0-0.011-0.02218.6500.0280.0280.0000.0000.0000.000
47A228ARG10.7760.88218.472-0.122-0.1220.0000.0000.0000.000
48A229ASN0-0.016-0.01718.4840.0040.0040.0000.0000.0000.000
49A230ILE0-0.091-0.01113.9160.0540.0540.0000.0000.0000.000
50A231PRO0-0.004-0.01110.194-0.031-0.0310.0000.0000.0000.000
51A232PHE00.0170.0046.557-0.012-0.0120.0000.0000.0000.000
52A233PHE00.023-0.00112.535-0.051-0.0510.0000.0000.0000.000
53A234PRO00.0120.01115.531-0.034-0.0340.0000.0000.0000.000
54A235ASP-1-0.990-0.99814.9790.0170.0170.0000.0000.0000.000
55A236LEU0-0.0090.02615.306-0.031-0.0310.0000.0000.0000.000
56A237GLN00.0480.01418.1490.0150.0150.0000.0000.0000.000
57A238ILE00.0480.01921.7520.0060.0060.0000.0000.0000.000
58A239THR00.006-0.01424.0740.0060.0060.0000.0000.0000.000
59A240ASP-1-0.754-0.85220.656-0.003-0.0030.0000.0000.0000.000
60A241GLN0-0.040-0.01319.9270.0170.0170.0000.0000.0000.000
61A242VAL0-0.031-0.02722.0670.0070.0070.0000.0000.0000.000
62A243ALA00.0130.02224.2710.0030.0030.0000.0000.0000.000
63A244LEU00.001-0.00118.6130.0010.0010.0000.0000.0000.000
64A245LEU00.0070.01422.5300.0060.0060.0000.0000.0000.000
65A246ARG10.8320.90824.548-0.042-0.0420.0000.0000.0000.000
66A247LEU0-0.0400.01224.372-0.002-0.0020.0000.0000.0000.000
67A248THR00.019-0.01821.9920.0050.0050.0000.0000.0000.000
68A249TRP00.0010.01325.1030.0130.0130.0000.0000.0000.000
69A250SER0-0.006-0.01026.8540.0090.0090.0000.0000.0000.000
70A251GLU-1-0.821-0.91824.1220.1010.1010.0000.0000.0000.000
71A252LEU00.0250.00720.6900.0120.0120.0000.0000.0000.000
72A253PHE0-0.0270.00024.5010.0080.0080.0000.0000.0000.000
73A254VAL00.001-0.00527.9300.0020.0020.0000.0000.0000.000
74A255LEU00.0040.00721.5250.0030.0030.0000.0000.0000.000
75A256ASN00.0410.01824.2320.0230.0230.0000.0000.0000.000
76A257ALA0-0.003-0.00626.385-0.001-0.0010.0000.0000.0000.000
77A258ALA0-0.063-0.04027.305-0.005-0.0050.0000.0000.0000.000
78A259GLN00.0080.00422.042-0.005-0.0050.0000.0000.0000.000
79A260CYS0-0.035-0.01026.8780.0030.0030.0000.0000.0000.000
80A261SER0-0.078-0.05229.653-0.010-0.0100.0000.0000.0000.000
81A262MET0-0.0300.00732.379-0.007-0.0070.0000.0000.0000.000
82A263PRO00.001-0.01434.286-0.002-0.0020.0000.0000.0000.000
83A264LEU00.0260.00935.969-0.002-0.0020.0000.0000.0000.000
84A265HIS00.028-0.00838.441-0.004-0.0040.0000.0000.0000.000
85A266VAL0-0.067-0.03240.210-0.004-0.0040.0000.0000.0000.000
86A267ALA00.0620.04843.0670.0000.0000.0000.0000.0000.000
87A268PRO0-0.093-0.05146.577-0.001-0.0010.0000.0000.0000.000
88A269NME00.0470.06745.9760.0020.0020.0000.0000.0000.000
89A285ACE0-0.001-0.00747.2160.0000.0000.0000.0000.0000.000
90A286VAL00.022-0.02447.620-0.001-0.0010.0000.0000.0000.000
91A287ALA0-0.042-0.01444.6740.0010.0010.0000.0000.0000.000
92A288PHE00.033-0.01644.270-0.002-0.0020.0000.0000.0000.000
93A289MET0-0.016-0.00543.1410.0000.0000.0000.0000.0000.000
94A290ASP-1-0.780-0.85942.9660.0480.0480.0000.0000.0000.000
95A291HIS00.0260.00140.7580.0030.0030.0000.0000.0000.000
96A292ILE0-0.020-0.00539.4690.0030.0030.0000.0000.0000.000
97A293ARG10.9390.95639.351-0.048-0.0480.0000.0000.0000.000
98A294ILE0-0.080-0.08137.0380.0020.0020.0000.0000.0000.000
99A295PHE00.0290.02632.0910.0040.0040.0000.0000.0000.000
100A296GLN0-0.0320.00733.8670.0050.0050.0000.0000.0000.000
101A297GLU-1-0.759-0.85333.5220.0780.0780.0000.0000.0000.000
102A298GLN0-0.019-0.02830.0090.0110.0110.0000.0000.0000.000
103A299VAL00.0360.02030.1490.0100.0100.0000.0000.0000.000
104A300GLU-1-0.939-0.98430.9900.0880.0880.0000.0000.0000.000
105A301LYS10.8340.90330.242-0.076-0.0760.0000.0000.0000.000
106A302LEU0-0.0070.01324.6740.0060.0060.0000.0000.0000.000
107A303LYS10.8990.96927.695-0.110-0.1100.0000.0000.0000.000
108A304ALA0-0.021-0.00129.9450.0030.0030.0000.0000.0000.000
109A305LEU0-0.049-0.01925.015-0.003-0.0030.0000.0000.0000.000
110A306HIS0-0.010-0.00826.4000.0150.0150.0000.0000.0000.000
111A307VAL0-0.057-0.01421.7970.0130.0130.0000.0000.0000.000
112A308ASP-1-0.710-0.79019.8760.3450.3450.0000.0000.0000.000
113A309SER00.015-0.01120.8250.0100.0100.0000.0000.0000.000
114A310ALA00.0640.03015.6850.0140.0140.0000.0000.0000.000
115A311GLU-1-0.749-0.84416.2920.3170.3170.0000.0000.0000.000
116A312TYR00.0430.00118.185-0.019-0.0190.0000.0000.0000.000
117A313SER00.0470.03016.147-0.024-0.0240.0000.0000.0000.000
118A314CYS0-0.050-0.02513.3530.0460.0460.0000.0000.0000.000
119A315LEU0-0.020-0.01414.965-0.033-0.0330.0000.0000.0000.000
120A316LYS10.7730.85718.020-0.279-0.2790.0000.0000.0000.000
121A317ALA00.0220.01913.381-0.029-0.0290.0000.0000.0000.000
122A318ILE0-0.036-0.02314.402-0.040-0.0400.0000.0000.0000.000
123A319VAL0-0.0320.00515.989-0.035-0.0350.0000.0000.0000.000
124A320LEU0-0.023-0.01417.058-0.024-0.0240.0000.0000.0000.000
125A321PHE0-0.041-0.02112.507-0.025-0.0250.0000.0000.0000.000
126A322THR00.0390.02116.600-0.020-0.0200.0000.0000.0000.000
127A323SER00.028-0.02719.3020.0040.0040.0000.0000.0000.000
128A324ASP-1-0.848-0.91320.6050.0220.0220.0000.0000.0000.000
129A325ALA0-0.097-0.02823.0780.0000.0000.0000.0000.0000.000
130A326CYS0-0.018-0.01924.861-0.010-0.0100.0000.0000.0000.000
131A327GLY0-0.009-0.01627.0110.0050.0050.0000.0000.0000.000
132A328LEU0-0.0210.00420.3760.0010.0010.0000.0000.0000.000
133A329SER0-0.131-0.08821.703-0.013-0.0130.0000.0000.0000.000
134A330ASP-1-0.882-0.95317.498-0.136-0.1360.0000.0000.0000.000
135A331VAL00.0460.02218.0480.0030.0030.0000.0000.0000.000
136A332ALA00.0250.02616.3020.0040.0040.0000.0000.0000.000
137A333HIS00.0390.02111.248-0.061-0.0610.0000.0000.0000.000
138A334VAL00.005-0.00113.0230.0130.0130.0000.0000.0000.000
139A335GLU-1-0.839-0.91414.231-0.045-0.0450.0000.0000.0000.000
140A336SER0-0.001-0.00310.000-0.015-0.0150.0000.0000.0000.000
141A337LEU0-0.082-0.0309.2960.0060.0060.0000.0000.0000.000
142A338GLN0-0.039-0.01810.7180.0870.0870.0000.0000.0000.000
143A339GLU-1-0.945-0.9629.539-0.143-0.1430.0000.0000.0000.000
144A340LYS10.9040.9383.5510.6520.7500.000-0.021-0.0760.000
145A341SER0-0.035-0.0107.9360.3120.3120.0000.0000.0000.000
146A342GLN00.0290.02210.5800.1110.1110.0000.0000.0000.000
147A343CYS00.0220.0217.9410.1340.1340.0000.0000.0000.000
148A344ALA00.014-0.0128.0010.1350.1350.0000.0000.0000.000
149A345LEU00.0170.0139.342-0.033-0.0330.0000.0000.0000.000
150A346GLU-1-0.789-0.86912.5070.2930.2930.0000.0000.0000.000
151A347GLU-1-0.876-0.9518.3731.1131.1130.0000.0000.0000.000
152A348TYR0-0.067-0.05212.096-0.036-0.0360.0000.0000.0000.000
153A349VAL00.0110.00813.986-0.072-0.0720.0000.0000.0000.000
154A350ARG10.7620.86911.477-0.443-0.4430.0000.0000.0000.000
155A351SER0-0.085-0.06014.374-0.040-0.0400.0000.0000.0000.000
156A352GLN0-0.030-0.01916.811-0.074-0.0740.0000.0000.0000.000
157A353TYR0-0.091-0.07719.184-0.055-0.0550.0000.0000.0000.000
158A354PRO00.0310.03620.948-0.022-0.0220.0000.0000.0000.000
159A355ASN0-0.062-0.04521.927-0.027-0.0270.0000.0000.0000.000
160A356GLN00.003-0.00423.888-0.017-0.0170.0000.0000.0000.000
161A357PRO00.0640.03622.4690.0130.0130.0000.0000.0000.000
162A358THR0-0.030-0.02922.4670.0030.0030.0000.0000.0000.000
163A359ARG10.7520.85021.559-0.233-0.2330.0000.0000.0000.000
164A360PHE00.0740.03715.319-0.001-0.0010.0000.0000.0000.000
165A361GLY00.0620.03519.814-0.006-0.0060.0000.0000.0000.000
166A362LYS10.8700.92422.157-0.126-0.1260.0000.0000.0000.000
167A363LEU0-0.0080.01319.298-0.011-0.0110.0000.0000.0000.000
168A364LEU00.0690.02517.032-0.008-0.0080.0000.0000.0000.000
169A365LEU0-0.035-0.00721.167-0.016-0.0160.0000.0000.0000.000
170A366ARG10.8680.93223.959-0.120-0.1200.0000.0000.0000.000
171A367LEU00.0360.02119.427-0.006-0.0060.0000.0000.0000.000
172A368PRO00.0290.01924.076-0.007-0.0070.0000.0000.0000.000
173A369SER0-0.041-0.01926.995-0.004-0.0040.0000.0000.0000.000
174A370LEU00.0180.01623.837-0.004-0.0040.0000.0000.0000.000
175A371ARG10.8210.91123.266-0.068-0.0680.0000.0000.0000.000
176A372THR0-0.117-0.06028.021-0.008-0.0080.0000.0000.0000.000
177A373VAL0-0.0010.01929.950-0.004-0.0040.0000.0000.0000.000
178A374SER00.005-0.00732.445-0.001-0.0010.0000.0000.0000.000
179A375SER00.0740.01931.9340.0040.0040.0000.0000.0000.000
180A376SER00.0510.02534.1270.0020.0020.0000.0000.0000.000
181A377VAL0-0.028-0.00337.434-0.001-0.0010.0000.0000.0000.000
182A378ILE00.0380.02431.9570.0010.0010.0000.0000.0000.000
183A379GLU-1-0.839-0.93235.7010.0560.0560.0000.0000.0000.000
184A380GLN0-0.014-0.01437.767-0.003-0.0030.0000.0000.0000.000
185A381LEU0-0.067-0.03137.643-0.002-0.0020.0000.0000.0000.000
186A382PHE0-0.038-0.02535.7980.0000.0000.0000.0000.0000.000
187A383PHE00.0340.01233.1330.0000.0000.0000.0000.0000.000
188A384VAL00.0370.02638.890-0.002-0.0020.0000.0000.0000.000
189A385ARG10.8890.94742.429-0.053-0.0530.0000.0000.0000.000
190A386LEU0-0.030-0.01137.544-0.001-0.0010.0000.0000.0000.000
191A387VAL00.0520.04137.170-0.001-0.0010.0000.0000.0000.000
192A388GLY0-0.008-0.00940.617-0.004-0.0040.0000.0000.0000.000
193A389LYS10.9000.95142.142-0.032-0.0320.0000.0000.0000.000
194A390THR0-0.078-0.03038.871-0.001-0.0010.0000.0000.0000.000
195A391PRO00.0790.03136.7020.0030.0030.0000.0000.0000.000
196A392ILE00.0700.03831.614-0.001-0.0010.0000.0000.0000.000
197A393GLU-1-0.900-0.95431.4210.0440.0440.0000.0000.0000.000
198A394THR0-0.073-0.05132.163-0.002-0.0020.0000.0000.0000.000
199A395LEU0-0.003-0.00833.988-0.002-0.0020.0000.0000.0000.000
200A396ILE0-0.0020.01127.3730.0030.0030.0000.0000.0000.000
201A397ARG10.9730.97228.911-0.032-0.0320.0000.0000.0000.000
202A398ASP-1-0.897-0.94329.9100.0510.0510.0000.0000.0000.000
203A399MET0-0.045-0.01929.6850.0050.0050.0000.0000.0000.000
204A400LEU0-0.0100.00223.1950.0070.0070.0000.0000.0000.000
205A401LEU0-0.022-0.00526.7120.0060.0060.0000.0000.0000.000
206A402SER0-0.090-0.05629.023-0.006-0.0060.0000.0000.0000.000
207A403GLY0-0.043-0.03228.8390.0030.0030.0000.0000.0000.000
208A404SER0-0.051-0.02827.9110.0090.0090.0000.0000.0000.000
209A405SER00.0300.00025.139-0.002-0.0020.0000.0000.0000.000
210A406PHE0-0.0070.02924.1460.0000.0000.0000.0000.0000.000
211A407ASN0-0.080-0.05321.6380.0160.0160.0000.0000.0000.000
212A0NME00.1080.08720.595-0.009-0.0090.0000.0000.0000.000