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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XN3VQ

Calculation Name: 2CAR-A-Xray13

Preferred Name: Inosine triphosphate pyrophosphatase

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 2CAR

Chain ID: A

ChEMBL ID: CHEMBL4105788

UniProt ID: Q9BY32

Base Structure: X-ray

Registration Date: 2017-12-04

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20171117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 196
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2103075.095018
FMO2-HF: Nuclear repulsion 2026736.786034
FMO2-HF: Total energy -76338.308983
FMO2-MP2: Total energy -76558.842204


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-1:GLY)


Summations of interaction energy for fragment #1(A:-1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-34.45-36.7930.9532.279-0.888-0.011
Interaction energy analysis for fragmet #1(A:-1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.859 / q_NPA : 0.932
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A1MET00.0350.0192.7720.368-2.1380.9552.335-0.783-0.011
4A2ALA00.0780.0374.5122.4262.403-0.001-0.0110.0360.000
5A3ALA00.0280.0084.6021.9401.978-0.001-0.013-0.0240.000
6A4SER0-0.108-0.0453.7913.0143.1620.000-0.032-0.1170.000
7A5LEU0-0.006-0.0315.5464.3594.3590.0000.0000.0000.000
8A6VAL00.0730.0508.6962.8962.8960.0000.0000.0000.000
9A7GLY0-0.023-0.00810.782-0.802-0.8020.0000.0000.0000.000
10A8LYS10.8570.9478.52433.13033.1300.0000.0000.0000.000
11A9LYS10.9330.96813.75515.52115.5210.0000.0000.0000.000
12A10ILE00.0010.00312.894-0.969-0.9690.0000.0000.0000.000
13A11VAL0-0.015-0.00116.0961.0111.0110.0000.0000.0000.000
14A12PHE0-0.009-0.00918.929-0.285-0.2850.0000.0000.0000.000
15A13VAL00.0270.00921.0850.5880.5880.0000.0000.0000.000
16A14THR0-0.022-0.01523.6580.4870.4870.0000.0000.0000.000
17A15GLY0-0.008-0.00726.9930.0040.0040.0000.0000.0000.000
18A16ASN0-0.050-0.04229.5550.3900.3900.0000.0000.0000.000
19A17ALA00.1180.05229.317-0.284-0.2840.0000.0000.0000.000
20A18LYS10.8950.93829.5008.9758.9750.0000.0000.0000.000
21A19LYS10.9190.96828.0789.5739.5730.0000.0000.0000.000
22A20LEU00.0240.01922.965-0.278-0.2780.0000.0000.0000.000
23A21GLU-1-0.821-0.88925.596-10.103-10.1030.0000.0000.0000.000
24A22GLU-1-0.956-0.98827.311-10.200-10.2000.0000.0000.0000.000
25A23VAL00.0150.01321.793-0.118-0.1180.0000.0000.0000.000
26A24VAL00.0300.01122.355-0.388-0.3880.0000.0000.0000.000
27A25GLN0-0.038-0.02223.561-0.055-0.0550.0000.0000.0000.000
28A26ILE0-0.057-0.01723.330-0.017-0.0170.0000.0000.0000.000
29A27LEU0-0.030-0.01618.393-0.194-0.1940.0000.0000.0000.000
30A28GLY00.0240.02920.722-0.497-0.4970.0000.0000.0000.000
31A29ASP-1-0.962-1.00621.232-13.875-13.8750.0000.0000.0000.000
32A30LYS10.8690.94418.42915.05515.0550.0000.0000.0000.000
33A31PHE0-0.0030.00314.957-1.407-1.4070.0000.0000.0000.000
34A32PRO00.0160.01512.4060.3100.3100.0000.0000.0000.000
35A33CYS0-0.0150.01112.595-2.050-2.0500.0000.0000.0000.000
36A34THR00.0330.02414.8901.4741.4740.0000.0000.0000.000
37A35LEU00.0000.00017.238-0.239-0.2390.0000.0000.0000.000
38A36VAL0-0.008-0.01019.4800.7520.7520.0000.0000.0000.000
39A37ALA0-0.037-0.01221.895-0.263-0.2630.0000.0000.0000.000
40A38GLN00.0140.00223.825-0.160-0.1600.0000.0000.0000.000
41A39LYS10.9880.99625.4939.9349.9340.0000.0000.0000.000
42A40ILE0-0.018-0.01123.0750.1420.1420.0000.0000.0000.000
43A41ASP-1-0.982-0.98926.464-9.891-9.8910.0000.0000.0000.000
44A42LEU0-0.0070.00623.768-0.317-0.3170.0000.0000.0000.000
45A43PRO00.007-0.00127.1040.3510.3510.0000.0000.0000.000
46A44GLU-1-0.976-0.98928.403-10.771-10.7710.0000.0000.0000.000
47A45TYR00.009-0.00426.0380.1230.1230.0000.0000.0000.000
48A46GLN0-0.020-0.02329.9580.0900.0900.0000.0000.0000.000
49A47GLY00.0380.03229.080-0.182-0.1820.0000.0000.0000.000
50A48GLU-1-0.938-0.99627.417-10.349-10.3490.0000.0000.0000.000
51A49PRO0-0.009-0.01826.710-0.348-0.3480.0000.0000.0000.000
52A50ASP-1-0.726-0.85222.010-14.002-14.0020.0000.0000.0000.000
53A51GLU-1-0.851-0.88222.285-11.836-11.8360.0000.0000.0000.000
54A52ILE0-0.018-0.01823.972-0.204-0.2040.0000.0000.0000.000
55A53SER0-0.008-0.00121.180-0.262-0.2620.0000.0000.0000.000
56A54ILE0-0.014-0.02018.312-0.566-0.5660.0000.0000.0000.000
57A55GLN0-0.0090.00420.105-0.373-0.3730.0000.0000.0000.000
58A56LYS10.9010.95822.66511.81911.8190.0000.0000.0000.000
59A57CYS0-0.062-0.02517.018-0.455-0.4550.0000.0000.0000.000
60A58GLN00.005-0.01818.2690.1140.1140.0000.0000.0000.000
61A59GLU-1-0.873-0.92619.378-12.441-12.4410.0000.0000.0000.000
62A60ALA00.001-0.01519.6530.1520.1520.0000.0000.0000.000
63A61VAL0-0.050-0.02015.549-0.081-0.0810.0000.0000.0000.000
64A62ARG10.9410.99118.27013.59913.5990.0000.0000.0000.000
65A63GLN0-0.074-0.03121.1000.3590.3590.0000.0000.0000.000
66A64VAL0-0.038-0.02518.1580.1480.1480.0000.0000.0000.000
67A65GLN0-0.076-0.03117.331-0.446-0.4460.0000.0000.0000.000
68A66GLY00.0180.00914.335-0.633-0.6330.0000.0000.0000.000
69A67PRO0-0.056-0.02811.4360.4550.4550.0000.0000.0000.000
70A68VAL0-0.0090.00313.7671.3741.3740.0000.0000.0000.000
71A69LEU00.009-0.00215.668-0.785-0.7850.0000.0000.0000.000
72A70VAL00.005-0.00517.9190.8610.8610.0000.0000.0000.000
73A71GLU-1-0.767-0.84820.752-12.145-12.1450.0000.0000.0000.000
74A72ASP-1-0.812-0.90323.514-11.626-11.6260.0000.0000.0000.000
75A73THR0-0.061-0.04426.110-0.192-0.1920.0000.0000.0000.000
76A74CYS0-0.086-0.00928.8970.2400.2400.0000.0000.0000.000
77A75LEU00.0000.00631.149-0.042-0.0420.0000.0000.0000.000
78A76CYS0-0.076-0.01831.5960.1090.1090.0000.0000.0000.000
79A77PHE00.0630.01035.1430.0170.0170.0000.0000.0000.000
80A78ASN0-0.006-0.03836.363-0.277-0.2770.0000.0000.0000.000
81A79ALA00.0360.03838.784-0.003-0.0030.0000.0000.0000.000
82A80LEU0-0.073-0.03139.9310.1180.1180.0000.0000.0000.000
83A81GLY00.0230.01437.833-0.122-0.1220.0000.0000.0000.000
84A82GLY0-0.0030.00334.440-0.264-0.2640.0000.0000.0000.000
85A83LEU0-0.0160.00034.814-0.177-0.1770.0000.0000.0000.000
86A84PRO00.037-0.01637.0600.0960.0960.0000.0000.0000.000
87A85GLY00.0750.05333.324-0.122-0.1220.0000.0000.0000.000
88A86PRO00.053-0.00529.9860.0520.0520.0000.0000.0000.000
89A87TYR0-0.026-0.01031.910-0.033-0.0330.0000.0000.0000.000
90A88ILE00.0370.02233.8430.3110.3110.0000.0000.0000.000
91A89LYS10.9640.99134.5389.0639.0630.0000.0000.0000.000
92A90TRP00.0370.01435.3940.3020.3020.0000.0000.0000.000
93A91PHE00.0330.00939.1460.2240.2240.0000.0000.0000.000
94A92LEU00.0070.00839.0880.1860.1860.0000.0000.0000.000
95A93GLU-1-0.933-0.94841.110-6.823-6.8230.0000.0000.0000.000
96A94LYS10.8740.90842.8947.1657.1650.0000.0000.0000.000
97A95LEU0-0.0150.01244.2360.1650.1650.0000.0000.0000.000
98A96LYS10.8750.94144.9366.9596.9590.0000.0000.0000.000
99A97PRO00.0470.01143.422-0.015-0.0150.0000.0000.0000.000
100A98GLU-1-0.899-0.95545.141-6.143-6.1430.0000.0000.0000.000
101A99GLY00.0410.01747.8120.0580.0580.0000.0000.0000.000
102A100LEU0-0.055-0.03740.873-0.057-0.0570.0000.0000.0000.000
103A101HIS00.0350.01344.547-0.149-0.1490.0000.0000.0000.000
104A102GLN0-0.0030.00246.4210.0010.0010.0000.0000.0000.000
105A103LEU0-0.043-0.00843.0360.0820.0820.0000.0000.0000.000
106A104LEU00.0140.00142.837-0.011-0.0110.0000.0000.0000.000
107A105ALA0-0.079-0.04046.9670.0460.0460.0000.0000.0000.000
108A106GLY0-0.022-0.00850.0940.0950.0950.0000.0000.0000.000
109A107PHE00.0170.02146.203-0.004-0.0040.0000.0000.0000.000
110A108GLU-1-0.894-0.96548.475-6.274-6.2740.0000.0000.0000.000
111A109ASP-1-0.863-0.88042.174-7.549-7.5490.0000.0000.0000.000
112A110LYS10.8570.92844.3016.4916.4910.0000.0000.0000.000
113A111SER0-0.031-0.03239.787-0.179-0.1790.0000.0000.0000.000
114A112ALA00.0210.00437.536-0.011-0.0110.0000.0000.0000.000
115A113TYR0-0.014-0.01430.167-0.259-0.2590.0000.0000.0000.000
116A114ALA00.0130.03532.3010.0200.0200.0000.0000.0000.000
117A115LEU00.004-0.02725.546-0.174-0.1740.0000.0000.0000.000
118A116CYS0-0.0670.00225.1480.0440.0440.0000.0000.0000.000
119A117THR00.023-0.01020.973-0.332-0.3320.0000.0000.0000.000
120A118PHE00.0330.01718.8490.2920.2920.0000.0000.0000.000
121A119ALA00.001-0.00917.192-0.500-0.5000.0000.0000.0000.000
122A120LEU0-0.001-0.01011.2850.3040.3040.0000.0000.0000.000
123A121SER00.0630.03111.920-1.112-1.1120.0000.0000.0000.000
124A122THR00.0560.0157.3151.4041.4040.0000.0000.0000.000
125A123GLY0-0.046-0.03410.5750.1760.1760.0000.0000.0000.000
126A124ASP-1-0.742-0.86510.614-25.016-25.0160.0000.0000.0000.000
127A125PRO00.0080.0207.284-0.591-0.5910.0000.0000.0000.000
128A126SER0-0.130-0.0519.6730.7490.7490.0000.0000.0000.000
129A127GLN0-0.100-0.0826.852-5.249-5.2490.0000.0000.0000.000
130A128PRO0-0.030-0.0019.3531.9271.9270.0000.0000.0000.000
131A129VAL00.0270.00411.464-1.301-1.3010.0000.0000.0000.000
132A130ARG10.8990.97111.62621.57021.5700.0000.0000.0000.000
133A131LEU0-0.020-0.00113.7000.5570.5570.0000.0000.0000.000
134A132PHE0-0.023-0.00912.541-0.624-0.6240.0000.0000.0000.000
135A133ARG10.8220.87618.49115.01015.0100.0000.0000.0000.000
136A134GLY00.0530.03222.162-0.159-0.1590.0000.0000.0000.000
137A135ARG10.9090.95425.21011.68711.6870.0000.0000.0000.000
138A136THR0-0.005-0.00828.657-0.223-0.2230.0000.0000.0000.000
139A137SER00.0100.00532.033-0.017-0.0170.0000.0000.0000.000
140A138GLY00.1030.05535.0470.0180.0180.0000.0000.0000.000
141A139ARG10.9290.97138.4686.9636.9630.0000.0000.0000.000
142A140ILE0-0.029-0.00139.382-0.056-0.0560.0000.0000.0000.000
143A141VAL0-0.074-0.03442.9620.1630.1630.0000.0000.0000.000
144A142ALA00.0390.01446.112-0.056-0.0560.0000.0000.0000.000
145A143PRO0-0.061-0.03246.405-0.047-0.0470.0000.0000.0000.000
146A144ARG10.8850.94246.2946.8856.8850.0000.0000.0000.000
147A145GLY00.0670.03145.673-0.179-0.1790.0000.0000.0000.000
148A146CYS0-0.050-0.00944.9870.0900.0900.0000.0000.0000.000
149A147GLN00.045-0.00644.441-0.274-0.2740.0000.0000.0000.000
150A148ASP-1-0.873-0.94143.457-6.957-6.9570.0000.0000.0000.000
151A149PHE0-0.075-0.02439.649-0.192-0.1920.0000.0000.0000.000
152A150GLY00.008-0.01138.557-0.151-0.1510.0000.0000.0000.000
153A151TRP00.0450.00633.3120.1900.1900.0000.0000.0000.000
154A152ASP-1-0.797-0.89036.994-8.470-8.4700.0000.0000.0000.000
155A153PRO0-0.001-0.01739.5760.0320.0320.0000.0000.0000.000
156A154CYS0-0.0300.00141.3310.1090.1090.0000.0000.0000.000
157A155PHE00.0040.00935.720-0.012-0.0120.0000.0000.0000.000
158A156GLN00.0250.01940.4180.1210.1210.0000.0000.0000.000
159A157PRO0-0.054-0.00336.679-0.048-0.0480.0000.0000.0000.000
160A158ASP-1-0.831-0.95537.490-7.960-7.9600.0000.0000.0000.000
161A159GLY0-0.068-0.03638.032-0.206-0.2060.0000.0000.0000.000
162A160TYR0-0.076-0.04337.4050.0580.0580.0000.0000.0000.000
163A161GLU-1-0.924-0.95842.403-6.420-6.4200.0000.0000.0000.000
164A162GLN0-0.040-0.02243.3070.1770.1770.0000.0000.0000.000
165A163THR00.012-0.00542.176-0.201-0.2010.0000.0000.0000.000
166A164TYR00.000-0.03532.896-0.098-0.0980.0000.0000.0000.000
167A165ALA0-0.063-0.01839.467-0.061-0.0610.0000.0000.0000.000
168A166GLU-1-0.846-0.91741.841-6.711-6.7110.0000.0000.0000.000
169A167MET0-0.084-0.00338.110-0.001-0.0010.0000.0000.0000.000
170A168PRO00.0290.02240.789-0.085-0.0850.0000.0000.0000.000
171A169LYS10.9850.97632.8309.1129.1120.0000.0000.0000.000
172A170ALA0-0.011-0.01135.485-0.230-0.2300.0000.0000.0000.000
173A171GLU-1-0.833-0.90735.594-8.405-8.4050.0000.0000.0000.000
174A172LYS10.8540.91733.6188.7728.7720.0000.0000.0000.000
175A173ASN0-0.058-0.05631.420-0.208-0.2080.0000.0000.0000.000
176A174ALA00.0120.02331.023-0.384-0.3840.0000.0000.0000.000
177A175VAL0-0.0030.00531.994-0.203-0.2030.0000.0000.0000.000
178A176SER0-0.0130.02930.031-0.160-0.1600.0000.0000.0000.000
179A177HIS00.0700.03128.477-0.285-0.2850.0000.0000.0000.000
180A178ARG10.8080.83926.04210.88010.8800.0000.0000.0000.000
181A179PHE00.017-0.00524.950-0.454-0.4540.0000.0000.0000.000
182A180ARG10.9080.95924.5289.9649.9640.0000.0000.0000.000
183A181ALA00.0080.00822.025-0.472-0.4720.0000.0000.0000.000
184A182LEU0-0.015-0.01020.390-0.728-0.7280.0000.0000.0000.000
185A183LEU00.0220.01719.874-0.585-0.5850.0000.0000.0000.000
186A184GLU-1-0.907-0.94518.270-15.974-15.9740.0000.0000.0000.000
187A185LEU0-0.078-0.03214.435-1.227-1.2270.0000.0000.0000.000
188A186GLN0-0.039-0.04715.016-1.302-1.3020.0000.0000.0000.000
189A187GLU-1-0.959-0.97815.590-20.275-20.2750.0000.0000.0000.000
190A188TYR0-0.042-0.0298.130-2.328-2.3280.0000.0000.0000.000
191A189PHE0-0.069-0.04510.092-2.695-2.6950.0000.0000.0000.000
192A190GLY00.0020.02111.924-1.278-1.2780.0000.0000.0000.000
193A191SER0-0.024-0.02614.4220.3440.3440.0000.0000.0000.000
194A192LEU0-0.028-0.03014.3120.8900.8900.0000.0000.0000.000
195A193ALA0-0.033-0.01712.246-0.407-0.4070.0000.0000.0000.000
196A194ALA-1-0.835-0.88214.265-16.846-16.8460.0000.0000.0000.000