Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XNNJQ

Calculation Name: 2OHW-A-Xray19

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2OHW

Chain ID: A

ChEMBL ID:

UniProt ID: O32092

Base Structure: X-ray

Registration Date: 2018-06-04

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 172
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1307912.817599
FMO2-HF: Nuclear repulsion 1253250.238757
FMO2-HF: Total energy -54662.578842
FMO2-MP2: Total energy -54822.64285


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ACE)


Summations of interaction energy for fragment #1(A:2:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.5722.712-0.011-0.47-0.6580
Interaction energy analysis for fragmet #1(A:2:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.001 / q_NPA : -0.011
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4ASP-1-0.798-0.8943.858-0.3430.587-0.011-0.405-0.5140.000
4A5LYS10.7870.8995.7241.8031.8030.0000.0000.0000.000
5A6MET0-0.029-0.0144.0520.1590.2910.000-0.029-0.1030.000
6A7ASP-1-0.823-0.9185.4760.1710.1710.0000.0000.0000.000
7A8LEU0-0.019-0.0077.4950.1110.1110.0000.0000.0000.000
8A9TYR0-0.054-0.0329.0400.1000.1000.0000.0000.0000.000
9A10LEU00.026-0.0037.3550.0410.0410.0000.0000.0000.000
10A11GLN00.0110.02411.004-0.019-0.0190.0000.0000.0000.000
11A12GLN0-0.009-0.02013.1600.0030.0030.0000.0000.0000.000
12A13GLY00.0200.01514.641-0.005-0.0050.0000.0000.0000.000
13A14MET0-0.052-0.00511.9770.0380.0380.0000.0000.0000.000
14A15TYR00.0530.02814.1750.0110.0110.0000.0000.0000.000
15A16GLY00.0500.02715.466-0.020-0.0200.0000.0000.0000.000
16A17PRO0-0.030-0.00314.8530.0310.0310.0000.0000.0000.000
17A18LEU00.0030.0058.277-0.024-0.0240.0000.0000.0000.000
18A19GLU-1-0.901-0.9528.710-0.442-0.4420.0000.0000.0000.000
19A20THR0-0.036-0.0109.8880.0460.0460.0000.0000.0000.000
20A21LYS10.9570.95411.890-0.034-0.0340.0000.0000.0000.000
21A22PRO00.014-0.01011.0860.0280.0280.0000.0000.0000.000
22A23ASP-1-0.759-0.8647.2710.2930.2930.0000.0000.0000.000
23A24GLU-1-0.795-0.8858.9160.2270.2270.0000.0000.0000.000
24A25ARG10.8790.94911.447-0.153-0.1530.0000.0000.0000.000
25A26HIS00.0590.0268.4370.0100.0100.0000.0000.0000.000
26A27LEU00.0440.0658.3890.1080.1080.0000.0000.0000.000
27A28PHE0-0.026-0.0269.882-0.033-0.0330.0000.0000.0000.000
28A29LEU00.0130.01013.256-0.063-0.0630.0000.0000.0000.000
29A30GLY00.0500.01814.378-0.047-0.0470.0000.0000.0000.000
30A31SER0-0.061-0.03016.141-0.043-0.0430.0000.0000.0000.000
31A32LEU0-0.022-0.01315.2750.0250.0250.0000.0000.0000.000
32A33ARG10.8690.92914.435-0.103-0.1030.0000.0000.0000.000
33A34GLU-1-0.844-0.91516.3200.0580.0580.0000.0000.0000.000
34A35ARG10.8140.89919.454-0.100-0.1000.0000.0000.0000.000
35A36VAL0-0.0330.00716.4440.0000.0000.0000.0000.0000.000
36A37VAL0-0.0140.00819.885-0.015-0.0150.0000.0000.0000.000
37A38LEU0-0.003-0.01620.997-0.011-0.0110.0000.0000.0000.000
38A39ALA00.0160.02116.3010.0150.0150.0000.0000.0000.000
39A40LEU0-0.0240.01518.396-0.020-0.0200.0000.0000.0000.000
40A41THR00.0880.02914.4080.0270.0270.0000.0000.0000.000
41A42LYS10.9260.95213.979-0.372-0.3720.0000.0000.0000.000
42A43GLY00.0240.01416.598-0.026-0.0260.0000.0000.0000.000
43A44GLN00.0540.03918.516-0.003-0.0030.0000.0000.0000.000
44A45VAL0-0.010-0.01219.966-0.017-0.0170.0000.0000.0000.000
45A46LEU0-0.046-0.02319.487-0.012-0.0120.0000.0000.0000.000
46A47ARG10.8330.93922.891-0.097-0.0970.0000.0000.0000.000
47A48SER00.023-0.00125.1980.0010.0010.0000.0000.0000.000
48A49LYS10.9310.97528.793-0.065-0.0650.0000.0000.0000.000
49A50PRO00.0280.02927.5270.0030.0030.0000.0000.0000.000
50A51TYR0-0.052-0.06423.363-0.004-0.0040.0000.0000.0000.000
51A52LYS10.8580.90927.577-0.057-0.0570.0000.0000.0000.000
52A53GLU-1-0.809-0.91726.3850.0690.0690.0000.0000.0000.000
53A54ALA00.0360.01525.1170.0010.0010.0000.0000.0000.000
54A55GLU-1-0.799-0.87926.7440.0630.0630.0000.0000.0000.000
55A56HIS0-0.074-0.02729.933-0.006-0.0060.0000.0000.0000.000
56A57GLU-1-0.718-0.85525.5500.0650.0650.0000.0000.0000.000
57A58LEU00.003-0.01026.9300.0000.0000.0000.0000.0000.000
58A59LYS10.8980.96729.855-0.050-0.0500.0000.0000.0000.000
59A60ASN0-0.098-0.05431.925-0.007-0.0070.0000.0000.0000.000
60A61SER0-0.0350.00029.594-0.002-0.0020.0000.0000.0000.000
61A62HIS00.0250.00530.586-0.005-0.0050.0000.0000.0000.000
62A63ASN0-0.038-0.00830.2370.0040.0040.0000.0000.0000.000
63A64VAL00.0220.01626.0720.0040.0040.0000.0000.0000.000
64A65THR0-0.061-0.03424.442-0.004-0.0040.0000.0000.0000.000
65A66LEU0-0.011-0.00223.3660.0060.0060.0000.0000.0000.000
66A67LEU0-0.035-0.01018.916-0.004-0.0040.0000.0000.0000.000
67A68ILE00.004-0.00820.6100.0050.0050.0000.0000.0000.000
68A69ASN00.0290.00614.196-0.024-0.0240.0000.0000.0000.000
69A70GLY00.0370.01018.212-0.020-0.0200.0000.0000.0000.000
70A71GLU-1-0.762-0.78315.0910.4090.4090.0000.0000.0000.000
71A72LEU0-0.115-0.03918.421-0.017-0.0170.0000.0000.0000.000
72A73GLN00.1050.06620.749-0.019-0.0190.0000.0000.0000.000
73A74TYR00.0940.05624.379-0.004-0.0040.0000.0000.0000.000
74A75GLN00.026-0.02527.168-0.002-0.0020.0000.0000.0000.000
75A76SER0-0.051-0.01323.466-0.002-0.0020.0000.0000.0000.000
76A77TYR00.0690.04723.1440.0000.0000.0000.0000.0000.000
77A78SER0-0.0280.00325.595-0.008-0.0080.0000.0000.0000.000
78A79SER00.0540.01229.033-0.008-0.0080.0000.0000.0000.000
79A80TYR00.006-0.03125.163-0.008-0.0080.0000.0000.0000.000
80A81ILE00.0110.02627.493-0.003-0.0030.0000.0000.0000.000
81A82GLN0-0.065-0.04529.701-0.010-0.0100.0000.0000.0000.000
82A83MET0-0.081-0.01927.824-0.006-0.0060.0000.0000.0000.000
83A84ALA00.0370.01528.827-0.005-0.0050.0000.0000.0000.000
84A85SER00.0380.01830.912-0.005-0.0050.0000.0000.0000.000
85A86ARG10.8570.95134.084-0.069-0.0690.0000.0000.0000.000
86A87TYR0-0.058-0.06432.891-0.007-0.0070.0000.0000.0000.000
87A88GLY00.0060.02134.862-0.001-0.0010.0000.0000.0000.000
88A89VAL0-0.035-0.00228.3200.0010.0010.0000.0000.0000.000
89A90PRO00.0240.03128.7560.0020.0020.0000.0000.0000.000
90A91PHE00.032-0.00926.3020.0050.0050.0000.0000.0000.000
91A92LYS10.9310.96323.401-0.137-0.1370.0000.0000.0000.000
92A93ILE00.0040.00022.3790.0090.0090.0000.0000.0000.000
93A94VAL0-0.034-0.01716.986-0.010-0.0100.0000.0000.0000.000
94A95SER00.003-0.01518.8620.0220.0220.0000.0000.0000.000
95A96ASP-1-0.902-0.93317.7730.2840.2840.0000.0000.0000.000
96A97LEU0-0.050-0.01713.0410.0170.0170.0000.0000.0000.000
97A98GLN00.0440.03211.247-0.031-0.0310.0000.0000.0000.000
98A99PHE0-0.026-0.0054.263-0.0520.0260.000-0.036-0.0410.000
99A100HIS00.0430.0358.320-0.149-0.1490.0000.0000.0000.000
100A101THR00.009-0.0037.8360.2910.2910.0000.0000.0000.000
101A102PRO00.0730.0458.308-0.134-0.1340.0000.0000.0000.000
102A103LEU0-0.020-0.01111.241-0.133-0.1330.0000.0000.0000.000
103A104GLY0-0.009-0.02314.0670.0180.0180.0000.0000.0000.000
104A105ILE0-0.031-0.01617.421-0.015-0.0150.0000.0000.0000.000
105A106VAL00.0100.00915.9630.0070.0070.0000.0000.0000.000
106A107ILE0-0.0160.00319.196-0.008-0.0080.0000.0000.0000.000
107A108ALA00.0220.00820.340-0.001-0.0010.0000.0000.0000.000
108A109ALA00.0230.00822.247-0.006-0.0060.0000.0000.0000.000
109A110ASP-1-0.838-0.86924.0460.0800.0800.0000.0000.0000.000
110A111ILE0-0.017-0.01026.182-0.003-0.0030.0000.0000.0000.000
111A112ALA0-0.049-0.02623.6730.0070.0070.0000.0000.0000.000
112A113VAL00.003-0.00823.520-0.007-0.0070.0000.0000.0000.000
113A114ASN0-0.067-0.03122.098-0.004-0.0040.0000.0000.0000.000
114A115ARG10.8890.93022.316-0.074-0.0740.0000.0000.0000.000
115A116GLU-1-0.949-0.98220.9190.0170.0170.0000.0000.0000.000
116A117LEU0-0.033-0.01820.1130.0040.0040.0000.0000.0000.000
117A118ILE0-0.039-0.01415.9650.0040.0040.0000.0000.0000.000
118A119TYR00.0140.02217.7370.0180.0180.0000.0000.0000.000
119A120ILE00.004-0.00119.785-0.017-0.0170.0000.0000.0000.000
120A121GLN00.0230.01220.8930.0100.0100.0000.0000.0000.000
121A122ASP-1-0.759-0.86321.2850.0860.0860.0000.0000.0000.000
122A123ASP-1-0.858-0.94221.0750.0660.0660.0000.0000.0000.000
123A124ILE0-0.002-0.00719.7100.0050.0050.0000.0000.0000.000
124A125TYR0-0.0390.00314.1280.0330.0330.0000.0000.0000.000
125A126ASN00.0360.01616.1050.0190.0190.0000.0000.0000.000
126A127ARG10.8610.93316.051-0.066-0.0660.0000.0000.0000.000
127A128SER0-0.071-0.04815.3070.0170.0170.0000.0000.0000.000
128A129VAL0-0.029-0.00311.2860.0490.0490.0000.0000.0000.000
129A130LEU0-0.015-0.0148.0660.0860.0860.0000.0000.0000.000
130A131NME0-0.0390.0039.3590.0250.0250.0000.0000.0000.000
131A133HOH0-0.031-0.03819.029-0.008-0.0080.0000.0000.0000.000
132A134HOH00.000-0.00318.0070.0020.0020.0000.0000.0000.000
133A135HOH0-0.017-0.01620.231-0.007-0.0070.0000.0000.0000.000
134A136HOH0-0.015-0.01322.893-0.001-0.0010.0000.0000.0000.000
135A137HOH00.0240.03724.536-0.001-0.0010.0000.0000.0000.000
136A138HOH0-0.027-0.02616.5890.0000.0000.0000.0000.0000.000
137A139HOH00.0110.00222.3950.0060.0060.0000.0000.0000.000
138A140HOH0-0.027-0.03823.595-0.003-0.0030.0000.0000.0000.000
139A142HOH0-0.049-0.04116.1330.0020.0020.0000.0000.0000.000
140A143HOH0-0.020-0.01537.808-0.001-0.0010.0000.0000.0000.000
141A144HOH00.0290.01726.5000.0040.0040.0000.0000.0000.000
142A145HOH0-0.045-0.04332.000-0.001-0.0010.0000.0000.0000.000
143A147HOH00.0020.00713.7660.0090.0090.0000.0000.0000.000
144A148HOH0-0.037-0.02617.469-0.007-0.0070.0000.0000.0000.000
145A150HOH0-0.058-0.04222.138-0.003-0.0030.0000.0000.0000.000
146A152HOH0-0.018-0.02633.757-0.002-0.0020.0000.0000.0000.000
147A153HOH0-0.021-0.01128.6810.0020.0020.0000.0000.0000.000
148A154HOH00.0290.0176.564-0.079-0.0790.0000.0000.0000.000
149A155HOH0-0.022-0.0349.565-0.058-0.0580.0000.0000.0000.000
150A157HOH00.0070.00124.9310.0030.0030.0000.0000.0000.000
151A158HOH0-0.026-0.01228.1460.0000.0000.0000.0000.0000.000
152A159HOH00.0690.05325.4190.0030.0030.0000.0000.0000.000
153A161HOH0-0.053-0.03413.878-0.013-0.0130.0000.0000.0000.000
154A162HOH0-0.023-0.01218.942-0.011-0.0110.0000.0000.0000.000
155A163HOH0-0.0040.00631.624-0.002-0.0020.0000.0000.0000.000
156A164HOH0-0.050-0.02519.725-0.009-0.0090.0000.0000.0000.000
157A165HOH0-0.040-0.03214.837-0.010-0.0100.0000.0000.0000.000
158A166HOH00.0100.01713.2920.0140.0140.0000.0000.0000.000
159A167HOH0-0.045-0.02339.438-0.001-0.0010.0000.0000.0000.000
160A169HOH0-0.009-0.02930.533-0.002-0.0020.0000.0000.0000.000
161A170HOH0-0.018-0.00423.908-0.003-0.0030.0000.0000.0000.000
162A171HOH00.0290.02129.1250.0020.0020.0000.0000.0000.000
163A172HOH0-0.025-0.01527.7770.0000.0000.0000.0000.0000.000
164A173HOH0-0.036-0.03011.308-0.011-0.0110.0000.0000.0000.000
165A175HOH00.0340.02812.381-0.034-0.0340.0000.0000.0000.000
166A176HOH0-0.098-0.09313.912-0.009-0.0090.0000.0000.0000.000
167A177HOH0-0.0020.00021.9410.0040.0040.0000.0000.0000.000
168A181HOH0-0.049-0.04028.932-0.002-0.0020.0000.0000.0000.000
169A183HOH0-0.034-0.02021.784-0.003-0.0030.0000.0000.0000.000
170A188HOH0-0.074-0.09115.874-0.018-0.0180.0000.0000.0000.000
171A190HOH0-0.038-0.06128.856-0.001-0.0010.0000.0000.0000.000
172A191HOH0-0.015-0.01511.476-0.025-0.0250.0000.0000.0000.000