Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XQV4Y

Calculation Name: 1R26-A-Xray18

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1R26

Chain ID: A

ChEMBL ID:

UniProt ID: Q9NG23

Base Structure: X-ray

Registration Date: 2018-06-04

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 207
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1182313.253998
FMO2-HF: Nuclear repulsion 1128896.402187
FMO2-HF: Total energy -53416.851811
FMO2-MP2: Total energy -53566.248352


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-8:ACE)


Summations of interaction energy for fragment #1(A:-8:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.031000000000002-0.9653.531-1.482-1.112-0.011
Interaction energy analysis for fragmet #1(A:-8:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.013 / q_NPA : -0.008
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A-6ARG10.8760.9363.8341.8792.592-0.011-0.335-0.3660.000
4A-5MET0-0.0060.0057.079-0.086-0.0860.0000.0000.0000.000
5A-4ARG10.9941.00010.3930.6220.6220.0000.0000.0000.000
6A-3ALA0-0.036-0.02212.5180.0620.0620.0000.0000.0000.000
7A-2ARG10.8690.91413.0870.2210.2210.0000.0000.0000.000
8A-1TYR00.0670.05116.035-0.001-0.0010.0000.0000.0000.000
9A0PRO00.0340.02216.0300.0020.0020.0000.0000.0000.000
10A1SER0-0.0050.00616.2900.0260.0260.0000.0000.0000.000
11A2VAL00.0180.01716.027-0.014-0.0140.0000.0000.0000.000
12A3VAL0-0.028-0.00112.108-0.029-0.0290.0000.0000.0000.000
13A4ASP-1-0.778-0.84615.4810.0120.0120.0000.0000.0000.000
14A5VAL0-0.013-0.00515.1470.0020.0020.0000.0000.0000.000
15A6TYR0-0.004-0.02617.326-0.006-0.0060.0000.0000.0000.000
16A7SER00.0360.02116.7180.0060.0060.0000.0000.0000.000
17A8VAL00.0490.01816.9890.0210.0210.0000.0000.0000.000
18A9GLU-1-0.727-0.82413.7280.3490.3490.0000.0000.0000.000
19A10GLN0-0.033-0.02012.6500.0550.0550.0000.0000.0000.000
20A11PHE00.0370.00712.0150.0560.0560.0000.0000.0000.000
21A12ARG10.8860.93212.229-0.402-0.4020.0000.0000.0000.000
22A13ASN0-0.0010.0038.5900.1570.1570.0000.0000.0000.000
23A14ILE0-0.021-0.0027.9310.2480.2480.0000.0000.0000.000
24A15MET0-0.021-0.0068.5710.1270.1270.0000.0000.0000.000
25A16SER0-0.007-0.0118.744-0.060-0.0600.0000.0000.0000.000
26A17GLU-1-0.893-0.9444.1601.1861.2360.001-0.0540.0030.000
27A18ASP-1-0.834-0.9093.8610.1190.1060.001-0.0530.0660.000
28A19ILE0-0.070-0.0374.080-0.658-0.5930.000-0.022-0.0420.000
29A20LEU0-0.047-0.0116.6310.0790.0790.0000.0000.0000.000
30A21THR00.013-0.0029.216-0.093-0.0930.0000.0000.0000.000
31A22VAL0-0.010-0.00611.7220.0120.0120.0000.0000.0000.000
32A23ALA00.0150.01515.357-0.016-0.0160.0000.0000.0000.000
33A24TRP0-0.003-0.01616.952-0.010-0.0100.0000.0000.0000.000
34A25PHE00.0280.01419.805-0.005-0.0050.0000.0000.0000.000
35A26THR0-0.002-0.04222.957-0.008-0.0080.0000.0000.0000.000
36A27ALA00.0770.04325.7210.0040.0040.0000.0000.0000.000
37A28VAL00.0410.04428.553-0.003-0.0030.0000.0000.0000.000
38A29TRP0-0.005-0.00230.550-0.003-0.0030.0000.0000.0000.000
39A30CYS00.0180.04430.9420.0030.0030.0000.0000.0000.000
40A31GLY00.0400.02232.439-0.002-0.0020.0000.0000.0000.000
41A32PRO00.0850.01731.920-0.003-0.0030.0000.0000.0000.000
42A33CYS0-0.053-0.01127.7750.0000.0000.0000.0000.0000.000
43A34LYS11.0581.04728.791-0.001-0.0010.0000.0000.0000.000
44A35THR0-0.090-0.06630.848-0.004-0.0040.0000.0000.0000.000
45A36ILE0-0.013-0.00925.792-0.004-0.0040.0000.0000.0000.000
46A37GLU-1-0.916-0.95426.224-0.009-0.0090.0000.0000.0000.000
47A38ARG11.0091.00425.7390.0220.0220.0000.0000.0000.000
48A39PRO0-0.026-0.01526.480-0.005-0.0050.0000.0000.0000.000
49A40MET00.0340.02520.514-0.001-0.0010.0000.0000.0000.000
50A41GLU-1-0.855-0.89521.672-0.045-0.0450.0000.0000.0000.000
51A42LYS10.9660.99422.0880.0260.0260.0000.0000.0000.000
52A43ILE0-0.050-0.02519.542-0.007-0.0070.0000.0000.0000.000
53A44ALA00.0190.00517.655-0.005-0.0050.0000.0000.0000.000
54A45TYR0-0.021-0.01317.597-0.027-0.0270.0000.0000.0000.000
55A46GLU-1-0.796-0.86319.556-0.056-0.0560.0000.0000.0000.000
56A47PHE0-0.0370.00016.1930.0050.0050.0000.0000.0000.000
57A48PRO00.0740.04414.8610.0000.0000.0000.0000.0000.000
58A49THR0-0.027-0.02211.253-0.049-0.0490.0000.0000.0000.000
59A50VAL0-0.0080.00710.4190.0160.0160.0000.0000.0000.000
60A51LYS10.8080.9187.131-0.219-0.2190.0000.0000.0000.000
61A52PHE0-0.012-0.01111.5990.0590.0590.0000.0000.0000.000
62A53ALA00.0240.00713.359-0.025-0.0250.0000.0000.0000.000
63A54LYS10.8860.94615.2930.0110.0110.0000.0000.0000.000
64A55VAL00.011-0.00418.3450.0010.0010.0000.0000.0000.000
65A56ASP-1-0.748-0.85720.6410.0320.0320.0000.0000.0000.000
66A57ALA00.030-0.00624.1320.0070.0070.0000.0000.0000.000
67A58ASP-1-0.743-0.80626.1600.0420.0420.0000.0000.0000.000
68A59ASN0-0.044-0.02125.1240.0000.0000.0000.0000.0000.000
69A60ASN0-0.0210.00621.2460.0110.0110.0000.0000.0000.000
70A61SER00.0760.02723.7710.0140.0140.0000.0000.0000.000
71A62GLU-1-0.760-0.86823.2360.1300.1300.0000.0000.0000.000
72A63ILE0-0.019-0.00718.2710.0120.0120.0000.0000.0000.000
73A64VAL00.0070.00621.7430.0090.0090.0000.0000.0000.000
74A65SER0-0.0100.01624.5710.0030.0030.0000.0000.0000.000
75A66LYS10.8550.91920.038-0.176-0.1760.0000.0000.0000.000
76A67CYS0-0.080-0.03220.0840.0160.0160.0000.0000.0000.000
77A68ARG10.9300.97722.678-0.135-0.1350.0000.0000.0000.000
78A69VAL0-0.009-0.00123.304-0.004-0.0040.0000.0000.0000.000
79A70LEU00.0090.00726.342-0.005-0.0050.0000.0000.0000.000
80A71GLN0-0.0010.00828.838-0.002-0.0020.0000.0000.0000.000
81A72LEU00.0250.05026.5230.0060.0060.0000.0000.0000.000
82A73PRO0-0.008-0.01225.686-0.005-0.0050.0000.0000.0000.000
83A74THR00.000-0.01523.1290.0000.0000.0000.0000.0000.000
84A75PHE0-0.032-0.01820.3970.0010.0010.0000.0000.0000.000
85A76ILE00.0110.00417.622-0.001-0.0010.0000.0000.0000.000
86A77ILE0-0.013-0.00715.2610.0050.0050.0000.0000.0000.000
87A78ALA00.0170.00013.054-0.002-0.0020.0000.0000.0000.000
88A79ARG10.9040.9287.044-0.426-0.4260.0000.0000.0000.000
89A80SER0-0.0130.0108.0450.0080.0080.0000.0000.0000.000
90A81GLY00.0240.0249.069-0.076-0.0760.0000.0000.0000.000
91A82LYS10.9290.99012.106-0.355-0.3550.0000.0000.0000.000
92A83MET00.0110.01314.461-0.001-0.0010.0000.0000.0000.000
93A84LEU00.003-0.00313.524-0.012-0.0120.0000.0000.0000.000
94A85GLY00.0450.01317.712-0.026-0.0260.0000.0000.0000.000
95A86HIS0-0.0090.00219.8050.0110.0110.0000.0000.0000.000
96A87VAL0-0.015-0.00122.284-0.009-0.0090.0000.0000.0000.000
97A88ILE00.0060.00524.6400.0010.0010.0000.0000.0000.000
98A89GLY00.0970.04927.484-0.006-0.0060.0000.0000.0000.000
99A90ALA00.0030.00227.6440.0010.0010.0000.0000.0000.000
100A91ASN0-0.031-0.01227.825-0.009-0.0090.0000.0000.0000.000
101A92PRO00.0840.03425.1170.0040.0040.0000.0000.0000.000
102A93GLY00.0330.01825.050-0.001-0.0010.0000.0000.0000.000
103A94MET00.0290.01725.8240.0020.0020.0000.0000.0000.000
104A95LEU00.0010.00819.3840.0060.0060.0000.0000.0000.000
105A96ARG10.8220.90421.5160.0240.0240.0000.0000.0000.000
106A97GLN0-0.010-0.00622.265-0.008-0.0080.0000.0000.0000.000
107A98LYS10.9620.99220.545-0.071-0.0710.0000.0000.0000.000
108A99LEU0-0.001-0.00516.0180.0100.0100.0000.0000.0000.000
109A100ARG10.8360.90618.407-0.005-0.0050.0000.0000.0000.000
110A101ASP-1-0.755-0.84420.6000.0340.0340.0000.0000.0000.000
111A102ILE0-0.0050.01915.5110.0080.0080.0000.0000.0000.000
112A103ILE0-0.064-0.01414.9220.0060.0060.0000.0000.0000.000
113A104LYS10.8850.95117.073-0.016-0.0160.0000.0000.0000.000
114A105ASP-1-0.807-0.86320.1580.0460.0460.0000.0000.0000.000
115A106NME0-0.0490.00016.0800.0100.0100.0000.0000.0000.000
116A107HOH00.003-0.00827.2030.0020.0020.0000.0000.0000.000
117A108HOH00.0520.03213.6360.0020.0020.0000.0000.0000.000
118A109HOH0-0.023-0.02328.1650.0020.0020.0000.0000.0000.000
119A110HOH00.0630.03327.9780.0020.0020.0000.0000.0000.000
120A111HOH00.006-0.0117.712-0.055-0.0550.0000.0000.0000.000
121A112HOH0-0.030-0.02820.7030.0020.0020.0000.0000.0000.000
122A114HOH0-0.0040.00127.1740.0030.0030.0000.0000.0000.000
123A115HOH00.0080.01230.420-0.001-0.0010.0000.0000.0000.000
124A116HOH0-0.039-0.02714.475-0.007-0.0070.0000.0000.0000.000
125A117HOH00.002-0.0039.2070.0280.0280.0000.0000.0000.000
126A119HOH0-0.040-0.03420.5940.0050.0050.0000.0000.0000.000
127A120HOH0-0.002-0.02129.945-0.001-0.0010.0000.0000.0000.000
128A121HOH0-0.043-0.03228.223-0.003-0.0030.0000.0000.0000.000
129A123HOH0-0.014-0.02728.401-0.002-0.0020.0000.0000.0000.000
130A124HOH00.0610.03810.9570.0100.0100.0000.0000.0000.000
131A125HOH0-0.040-0.03315.075-0.002-0.0020.0000.0000.0000.000
132A126HOH0-0.081-0.06124.621-0.003-0.0030.0000.0000.0000.000
133A127HOH00.007-0.00126.4370.0020.0020.0000.0000.0000.000
134A128HOH0-0.003-0.01421.2180.0060.0060.0000.0000.0000.000
135A129HOH00.008-0.00714.701-0.005-0.0050.0000.0000.0000.000
136A130HOH00.0240.0119.151-0.001-0.0010.0000.0000.0000.000
137A131HOH0-0.015-0.00624.3150.0060.0060.0000.0000.0000.000
138A132HOH00.000-0.01026.946-0.002-0.0020.0000.0000.0000.000
139A133HOH0-0.031-0.02314.2370.0070.0070.0000.0000.0000.000
140A134HOH00.0160.01023.6270.0010.0010.0000.0000.0000.000
141A135HOH00.0420.02420.853-0.001-0.0010.0000.0000.0000.000
142A136HOH00.0340.02216.345-0.007-0.0070.0000.0000.0000.000
143A137HOH00.0320.02312.5020.0080.0080.0000.0000.0000.000
144A138HOH00.0220.01832.4040.0010.0010.0000.0000.0000.000
145A139HOH0-0.023-0.02432.944-0.001-0.0010.0000.0000.0000.000
146A140HOH00.0250.02712.972-0.012-0.0120.0000.0000.0000.000
147A141HOH00.0110.0138.324-0.052-0.0520.0000.0000.0000.000
148A142HOH0-0.009-0.00921.2370.0060.0060.0000.0000.0000.000
149A143HOH0-0.011-0.00925.715-0.001-0.0010.0000.0000.0000.000
150A144HOH00.0400.0192.234-2.340-4.0893.540-1.018-0.773-0.011
151A145HOH00.0120.0157.857-0.008-0.0080.0000.0000.0000.000
152A146HOH00.014-0.00323.6990.0000.0000.0000.0000.0000.000
153A147HOH0-0.033-0.02126.5050.0030.0030.0000.0000.0000.000
154A148HOH0-0.008-0.00221.9560.0030.0030.0000.0000.0000.000
155A149HOH00.004-0.00831.923-0.001-0.0010.0000.0000.0000.000
156A150HOH00.0190.01227.335-0.003-0.0030.0000.0000.0000.000
157A151HOH00.0030.00220.2900.0020.0020.0000.0000.0000.000
158A152HOH00.0010.00025.6870.0030.0030.0000.0000.0000.000
159A153HOH0-0.030-0.01911.510-0.039-0.0390.0000.0000.0000.000
160A154HOH00.003-0.0095.9670.0610.0610.0000.0000.0000.000
161A156HOH0-0.012-0.01625.180-0.001-0.0010.0000.0000.0000.000
162A157HOH0-0.013-0.00818.8540.0040.0040.0000.0000.0000.000
163A159HOH0-0.013-0.01015.929-0.012-0.0120.0000.0000.0000.000
164A160HOH0-0.010-0.01425.696-0.002-0.0020.0000.0000.0000.000
165A161HOH0-0.044-0.03613.063-0.001-0.0010.0000.0000.0000.000
166A162HOH00.0060.01126.8030.0010.0010.0000.0000.0000.000
167A165HOH0-0.025-0.03421.680-0.001-0.0010.0000.0000.0000.000
168A166HOH0-0.021-0.02324.423-0.001-0.0010.0000.0000.0000.000
169A167HOH0-0.031-0.02624.595-0.002-0.0020.0000.0000.0000.000
170A169HOH0-0.089-0.07327.6450.0000.0000.0000.0000.0000.000
171A172HOH0-0.033-0.01831.717-0.001-0.0010.0000.0000.0000.000
172A173HOH0-0.038-0.0225.454-0.138-0.1380.0000.0000.0000.000
173A175HOH0-0.030-0.00327.191-0.002-0.0020.0000.0000.0000.000
174A176HOH0-0.0020.00125.3550.0000.0000.0000.0000.0000.000
175A179HOH00.0550.03322.9660.0040.0040.0000.0000.0000.000
176A181HOH0-0.014-0.01220.072-0.003-0.0030.0000.0000.0000.000
177A182HOH0-0.082-0.08725.0300.0010.0010.0000.0000.0000.000
178A183HOH0-0.027-0.0229.1370.0170.0170.0000.0000.0000.000
179A185HOH0-0.031-0.02219.4700.0040.0040.0000.0000.0000.000
180A186HOH0-0.058-0.04726.1110.0030.0030.0000.0000.0000.000
181A187HOH0-0.053-0.02432.686-0.001-0.0010.0000.0000.0000.000
182A188HOH0-0.036-0.02518.8150.0060.0060.0000.0000.0000.000
183A190HOH00.0380.02227.9790.0000.0000.0000.0000.0000.000
184A191HOH00.0320.02516.871-0.014-0.0140.0000.0000.0000.000
185A193HOH0-0.049-0.02820.1880.0020.0020.0000.0000.0000.000
186A194HOH0-0.029-0.01726.6900.0000.0000.0000.0000.0000.000
187A196HOH0-0.0050.00120.3390.0000.0000.0000.0000.0000.000
188A197HOH0-0.013-0.01311.470-0.041-0.0410.0000.0000.0000.000
189A198HOH0-0.004-0.00821.559-0.005-0.0050.0000.0000.0000.000
190A199HOH0-0.0020.00230.731-0.002-0.0020.0000.0000.0000.000
191A200HOH00.0420.04412.940-0.009-0.0090.0000.0000.0000.000
192A201HOH0-0.032-0.02324.7980.0010.0010.0000.0000.0000.000
193A202HOH0-0.039-0.03020.3180.0020.0020.0000.0000.0000.000
194A204HOH00.000-0.00315.492-0.013-0.0130.0000.0000.0000.000
195A209HOH0-0.045-0.03631.4640.0000.0000.0000.0000.0000.000
196A210HOH00.0210.01428.954-0.002-0.0020.0000.0000.0000.000
197A212HOH0-0.002-0.00511.555-0.023-0.0230.0000.0000.0000.000
198A213HOH0-0.047-0.04529.919-0.001-0.0010.0000.0000.0000.000
199A214HOH0-0.010-0.0078.707-0.072-0.0720.0000.0000.0000.000
200A215HOH0-0.057-0.02024.183-0.003-0.0030.0000.0000.0000.000
201A218HOH0-0.032-0.02234.862-0.001-0.0010.0000.0000.0000.000
202A219HOH0-0.016-0.01322.5600.0070.0070.0000.0000.0000.000
203A226HOH0-0.021-0.03116.730-0.003-0.0030.0000.0000.0000.000
204A227HOH0-0.050-0.06317.3860.0100.0100.0000.0000.0000.000
205A229HOH0-0.089-0.09330.9130.0010.0010.0000.0000.0000.000
206A230HOH0-0.001-0.01023.9120.0020.0020.0000.0000.0000.000
207A231HOH0-0.032-0.01633.7600.0000.0000.0000.0000.0000.000