FMODB ID: XR38P
Calculation Name: 1TG0-A-Xray13
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 1TG0
Chain ID: A
UniProt ID: P47068
Base Structure: X-ray
Registration Date: 2017-11-22
Reference:
Modeling method
Optimization | MOE:Amber10:EHT |
---|---|
Restraint | OptH |
Protonation | MOE:Protonate 3D |
Complement | Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE. |
Water | No |
Procedure | Auto-FMO protocol ver. 1.20171117 |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 67 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -402104.810831 |
---|---|
FMO2-HF: Nuclear repulsion | 375725.636616 |
FMO2-HF: Total energy | -26379.174215 |
FMO2-MP2: Total energy | -26458.060154 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:0:ACE)
Summations of interaction energy for
fragment #1(A:0:ACE)
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-0.299 | 0.652 | -0.013 | -0.429 | -0.509 | -0.001 |
Interaction energy analysis for fragmet #1(A:0:ACE)
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | A | 2 | PRO | 0 | -0.039 | -0.003 | 3.838 | 0.747 | 1.698 | -0.013 | -0.429 | -0.509 | -0.001 |
4 | A | 3 | GLU | -1 | -0.936 | -0.968 | 7.000 | -0.194 | -0.194 | 0.000 | 0.000 | 0.000 | 0.000 |
5 | A | 4 | VAL | 0 | -0.045 | 0.017 | 8.922 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
6 | A | 5 | PRO | 0 | -0.026 | -0.022 | 11.822 | 0.075 | 0.075 | 0.000 | 0.000 | 0.000 | 0.000 |
7 | A | 6 | PHE | 0 | -0.016 | -0.027 | 9.136 | -0.007 | -0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
8 | A | 7 | LYS | 1 | 0.887 | 0.945 | 13.236 | 0.315 | 0.315 | 0.000 | 0.000 | 0.000 | 0.000 |
9 | A | 8 | VAL | 0 | 0.007 | 0.008 | 12.154 | -0.088 | -0.088 | 0.000 | 0.000 | 0.000 | 0.000 |
10 | A | 9 | VAL | 0 | 0.017 | 0.010 | 14.827 | 0.069 | 0.069 | 0.000 | 0.000 | 0.000 | 0.000 |
11 | A | 10 | ALA | 0 | 0.010 | 0.019 | 17.237 | -0.029 | -0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
12 | A | 11 | GLN | 0 | -0.049 | -0.039 | 16.908 | 0.050 | 0.050 | 0.000 | 0.000 | 0.000 | 0.000 |
13 | A | 12 | PHE | 0 | -0.047 | -0.027 | 19.831 | 0.043 | 0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
14 | A | 13 | PRO | 0 | -0.008 | 0.008 | 21.914 | -0.015 | -0.015 | 0.000 | 0.000 | 0.000 | 0.000 |
15 | A | 14 | TYR | 0 | -0.035 | -0.030 | 21.417 | -0.001 | -0.001 | 0.000 | 0.000 | 0.000 | 0.000 |
16 | A | 15 | LYS | 1 | 0.817 | 0.898 | 23.589 | 0.132 | 0.132 | 0.000 | 0.000 | 0.000 | 0.000 |
17 | A | 16 | SER | 0 | -0.070 | -0.061 | 25.231 | 0.004 | 0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
18 | A | 17 | ASP | -1 | -0.910 | -0.949 | 27.555 | -0.087 | -0.087 | 0.000 | 0.000 | 0.000 | 0.000 |
19 | A | 18 | TYR | 0 | -0.087 | -0.038 | 25.301 | 0.014 | 0.014 | 0.000 | 0.000 | 0.000 | 0.000 |
20 | A | 19 | GLH | 0 | -0.063 | -0.057 | 27.227 | -0.004 | -0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
21 | A | 20 | ASP | -1 | -0.852 | -0.908 | 24.131 | -0.111 | -0.111 | 0.000 | 0.000 | 0.000 | 0.000 |
22 | A | 21 | ASP | -1 | -0.808 | -0.873 | 22.711 | -0.177 | -0.177 | 0.000 | 0.000 | 0.000 | 0.000 |
23 | A | 22 | LEU | 0 | -0.054 | 0.007 | 20.221 | 0.008 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
24 | A | 23 | ASN | 0 | -0.012 | -0.017 | 22.658 | 0.007 | 0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
25 | A | 24 | PHE | 0 | 0.032 | 0.017 | 19.213 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
26 | A | 25 | GLU | -1 | -0.842 | -0.917 | 24.842 | -0.123 | -0.123 | 0.000 | 0.000 | 0.000 | 0.000 |
27 | A | 26 | LYS | 1 | 0.836 | 0.898 | 23.516 | 0.156 | 0.156 | 0.000 | 0.000 | 0.000 | 0.000 |
28 | A | 27 | ASP | -1 | -0.899 | -0.953 | 22.490 | -0.159 | -0.159 | 0.000 | 0.000 | 0.000 | 0.000 |
29 | A | 28 | GLN | 0 | -0.084 | -0.022 | 22.222 | 0.011 | 0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
30 | A | 29 | GLU | -1 | -0.891 | -0.934 | 19.035 | -0.280 | -0.280 | 0.000 | 0.000 | 0.000 | 0.000 |
31 | A | 30 | ILE | 0 | -0.017 | -0.005 | 17.482 | 0.027 | 0.027 | 0.000 | 0.000 | 0.000 | 0.000 |
32 | A | 31 | ILE | 0 | -0.018 | -0.010 | 16.730 | -0.052 | -0.052 | 0.000 | 0.000 | 0.000 | 0.000 |
33 | A | 32 | VAL | 0 | -0.010 | 0.001 | 11.634 | 0.039 | 0.039 | 0.000 | 0.000 | 0.000 | 0.000 |
34 | A | 33 | THR | 0 | 0.015 | -0.022 | 14.302 | -0.021 | -0.021 | 0.000 | 0.000 | 0.000 | 0.000 |
35 | A | 34 | SER | 0 | -0.023 | -0.007 | 13.409 | 0.024 | 0.024 | 0.000 | 0.000 | 0.000 | 0.000 |
36 | A | 35 | VAL | 0 | -0.002 | -0.009 | 7.975 | -0.057 | -0.057 | 0.000 | 0.000 | 0.000 | 0.000 |
37 | A | 36 | GLU | -1 | -0.932 | -0.947 | 11.231 | -0.160 | -0.160 | 0.000 | 0.000 | 0.000 | 0.000 |
38 | A | 37 | ASP | -1 | -0.816 | -0.918 | 11.643 | -0.179 | -0.179 | 0.000 | 0.000 | 0.000 | 0.000 |
39 | A | 38 | ALA | 0 | -0.098 | -0.065 | 9.334 | -0.106 | -0.106 | 0.000 | 0.000 | 0.000 | 0.000 |
40 | A | 39 | GLU | -1 | -0.970 | -0.981 | 10.378 | -0.282 | -0.282 | 0.000 | 0.000 | 0.000 | 0.000 |
41 | A | 40 | TRP | 0 | -0.022 | -0.009 | 13.200 | -0.043 | -0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
42 | A | 41 | TYR | 0 | -0.090 | -0.108 | 8.086 | 0.043 | 0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
43 | A | 42 | PHE | 0 | 0.038 | 0.024 | 13.871 | 0.059 | 0.059 | 0.000 | 0.000 | 0.000 | 0.000 |
44 | A | 43 | GLY | 0 | -0.007 | -0.019 | 15.862 | -0.050 | -0.050 | 0.000 | 0.000 | 0.000 | 0.000 |
45 | A | 44 | GLU | -1 | -0.878 | -0.933 | 18.062 | -0.164 | -0.164 | 0.000 | 0.000 | 0.000 | 0.000 |
46 | A | 45 | TYR | 0 | -0.048 | -0.057 | 20.676 | -0.020 | -0.020 | 0.000 | 0.000 | 0.000 | 0.000 |
47 | A | 46 | GLN | 0 | -0.032 | 0.003 | 23.364 | 0.017 | 0.017 | 0.000 | 0.000 | 0.000 | 0.000 |
48 | A | 47 | ASP | -1 | -0.785 | -0.897 | 26.961 | -0.117 | -0.117 | 0.000 | 0.000 | 0.000 | 0.000 |
49 | A | 48 | SER | 0 | -0.059 | -0.061 | 29.209 | 0.005 | 0.005 | 0.000 | 0.000 | 0.000 | 0.000 |
50 | A | 49 | ASN | 0 | -0.099 | -0.041 | 32.278 | 0.010 | 0.010 | 0.000 | 0.000 | 0.000 | 0.000 |
51 | A | 50 | GLY | 0 | -0.037 | -0.006 | 31.753 | 0.006 | 0.006 | 0.000 | 0.000 | 0.000 | 0.000 |
52 | A | 51 | ASP | -1 | -0.933 | -0.956 | 31.137 | -0.092 | -0.092 | 0.000 | 0.000 | 0.000 | 0.000 |
53 | A | 52 | VAL | 0 | -0.063 | -0.038 | 24.991 | -0.007 | -0.007 | 0.000 | 0.000 | 0.000 | 0.000 |
54 | A | 53 | ILE | 0 | -0.038 | -0.006 | 25.435 | 0.009 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
55 | A | 54 | GLU | -1 | -0.901 | -0.987 | 21.990 | -0.176 | -0.176 | 0.000 | 0.000 | 0.000 | 0.000 |
56 | A | 55 | GLY | 0 | 0.045 | 0.029 | 21.214 | 0.018 | 0.018 | 0.000 | 0.000 | 0.000 | 0.000 |
57 | A | 56 | ILE | 0 | -0.014 | -0.001 | 18.233 | -0.033 | -0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
58 | A | 57 | PHE | 0 | -0.024 | -0.014 | 15.429 | 0.014 | 0.014 | 0.000 | 0.000 | 0.000 | 0.000 |
59 | A | 58 | PRO | 0 | 0.027 | 0.021 | 15.944 | -0.043 | -0.043 | 0.000 | 0.000 | 0.000 | 0.000 |
60 | A | 59 | LYS | 1 | 0.870 | 0.944 | 7.476 | 1.017 | 1.017 | 0.000 | 0.000 | 0.000 | 0.000 |
61 | A | 60 | SER | 0 | -0.049 | -0.024 | 13.067 | -0.025 | -0.025 | 0.000 | 0.000 | 0.000 | 0.000 |
62 | A | 61 | PHE | 0 | -0.031 | -0.018 | 14.459 | 0.036 | 0.036 | 0.000 | 0.000 | 0.000 | 0.000 |
63 | A | 62 | VAL | 0 | -0.022 | 0.003 | 13.104 | 0.044 | 0.044 | 0.000 | 0.000 | 0.000 | 0.000 |
64 | A | 63 | ALA | 0 | -0.021 | -0.005 | 12.762 | -0.051 | -0.051 | 0.000 | 0.000 | 0.000 | 0.000 |
65 | A | 64 | VAL | 0 | 0.019 | 0.001 | 8.363 | 0.033 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
66 | A | 65 | GLN | 0 | -0.025 | -0.013 | 11.780 | 0.088 | 0.088 | 0.000 | 0.000 | 0.000 | 0.000 |
67 | A | 66 | GLY | -1 | -0.964 | -0.973 | 12.950 | -0.470 | -0.470 | 0.000 | 0.000 | 0.000 | 0.000 |