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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XR38P

Calculation Name: 1TG0-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1TG0

Chain ID: A

ChEMBL ID:

UniProt ID: P47068

Base Structure: X-ray

Registration Date: 2017-11-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20171117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 67
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -402104.810831
FMO2-HF: Nuclear repulsion 375725.636616
FMO2-HF: Total energy -26379.174215
FMO2-MP2: Total energy -26458.060154


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:0:ACE)


Summations of interaction energy for fragment #1(A:0:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.2990.652-0.013-0.429-0.509-0.001
Interaction energy analysis for fragmet #1(A:0:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.045 / q_NPA : -0.039
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
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Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A2PRO0-0.039-0.0033.8380.7471.698-0.013-0.429-0.509-0.001
4A3GLU-1-0.936-0.9687.000-0.194-0.1940.0000.0000.0000.000
5A4VAL0-0.0450.0178.9220.0020.0020.0000.0000.0000.000
6A5PRO0-0.026-0.02211.8220.0750.0750.0000.0000.0000.000
7A6PHE0-0.016-0.0279.136-0.007-0.0070.0000.0000.0000.000
8A7LYS10.8870.94513.2360.3150.3150.0000.0000.0000.000
9A8VAL00.0070.00812.154-0.088-0.0880.0000.0000.0000.000
10A9VAL00.0170.01014.8270.0690.0690.0000.0000.0000.000
11A10ALA00.0100.01917.237-0.029-0.0290.0000.0000.0000.000
12A11GLN0-0.049-0.03916.9080.0500.0500.0000.0000.0000.000
13A12PHE0-0.047-0.02719.8310.0430.0430.0000.0000.0000.000
14A13PRO0-0.0080.00821.914-0.015-0.0150.0000.0000.0000.000
15A14TYR0-0.035-0.03021.417-0.001-0.0010.0000.0000.0000.000
16A15LYS10.8170.89823.5890.1320.1320.0000.0000.0000.000
17A16SER0-0.070-0.06125.2310.0040.0040.0000.0000.0000.000
18A17ASP-1-0.910-0.94927.555-0.087-0.0870.0000.0000.0000.000
19A18TYR0-0.087-0.03825.3010.0140.0140.0000.0000.0000.000
20A19GLH0-0.063-0.05727.227-0.004-0.0040.0000.0000.0000.000
21A20ASP-1-0.852-0.90824.131-0.111-0.1110.0000.0000.0000.000
22A21ASP-1-0.808-0.87322.711-0.177-0.1770.0000.0000.0000.000
23A22LEU0-0.0540.00720.2210.0080.0080.0000.0000.0000.000
24A23ASN0-0.012-0.01722.6580.0070.0070.0000.0000.0000.000
25A24PHE00.0320.01719.2130.0020.0020.0000.0000.0000.000
26A25GLU-1-0.842-0.91724.842-0.123-0.1230.0000.0000.0000.000
27A26LYS10.8360.89823.5160.1560.1560.0000.0000.0000.000
28A27ASP-1-0.899-0.95322.490-0.159-0.1590.0000.0000.0000.000
29A28GLN0-0.084-0.02222.2220.0110.0110.0000.0000.0000.000
30A29GLU-1-0.891-0.93419.035-0.280-0.2800.0000.0000.0000.000
31A30ILE0-0.017-0.00517.4820.0270.0270.0000.0000.0000.000
32A31ILE0-0.018-0.01016.730-0.052-0.0520.0000.0000.0000.000
33A32VAL0-0.0100.00111.6340.0390.0390.0000.0000.0000.000
34A33THR00.015-0.02214.302-0.021-0.0210.0000.0000.0000.000
35A34SER0-0.023-0.00713.4090.0240.0240.0000.0000.0000.000
36A35VAL0-0.002-0.0097.975-0.057-0.0570.0000.0000.0000.000
37A36GLU-1-0.932-0.94711.231-0.160-0.1600.0000.0000.0000.000
38A37ASP-1-0.816-0.91811.643-0.179-0.1790.0000.0000.0000.000
39A38ALA0-0.098-0.0659.334-0.106-0.1060.0000.0000.0000.000
40A39GLU-1-0.970-0.98110.378-0.282-0.2820.0000.0000.0000.000
41A40TRP0-0.022-0.00913.200-0.043-0.0430.0000.0000.0000.000
42A41TYR0-0.090-0.1088.0860.0430.0430.0000.0000.0000.000
43A42PHE00.0380.02413.8710.0590.0590.0000.0000.0000.000
44A43GLY0-0.007-0.01915.862-0.050-0.0500.0000.0000.0000.000
45A44GLU-1-0.878-0.93318.062-0.164-0.1640.0000.0000.0000.000
46A45TYR0-0.048-0.05720.676-0.020-0.0200.0000.0000.0000.000
47A46GLN0-0.0320.00323.3640.0170.0170.0000.0000.0000.000
48A47ASP-1-0.785-0.89726.961-0.117-0.1170.0000.0000.0000.000
49A48SER0-0.059-0.06129.2090.0050.0050.0000.0000.0000.000
50A49ASN0-0.099-0.04132.2780.0100.0100.0000.0000.0000.000
51A50GLY0-0.037-0.00631.7530.0060.0060.0000.0000.0000.000
52A51ASP-1-0.933-0.95631.137-0.092-0.0920.0000.0000.0000.000
53A52VAL0-0.063-0.03824.991-0.007-0.0070.0000.0000.0000.000
54A53ILE0-0.038-0.00625.4350.0090.0090.0000.0000.0000.000
55A54GLU-1-0.901-0.98721.990-0.176-0.1760.0000.0000.0000.000
56A55GLY00.0450.02921.2140.0180.0180.0000.0000.0000.000
57A56ILE0-0.014-0.00118.233-0.033-0.0330.0000.0000.0000.000
58A57PHE0-0.024-0.01415.4290.0140.0140.0000.0000.0000.000
59A58PRO00.0270.02115.944-0.043-0.0430.0000.0000.0000.000
60A59LYS10.8700.9447.4761.0171.0170.0000.0000.0000.000
61A60SER0-0.049-0.02413.067-0.025-0.0250.0000.0000.0000.000
62A61PHE0-0.031-0.01814.4590.0360.0360.0000.0000.0000.000
63A62VAL0-0.0220.00313.1040.0440.0440.0000.0000.0000.000
64A63ALA0-0.021-0.00512.762-0.051-0.0510.0000.0000.0000.000
65A64VAL00.0190.0018.3630.0330.0330.0000.0000.0000.000
66A65GLN0-0.025-0.01311.7800.0880.0880.0000.0000.0000.000
67A66GLY-1-0.964-0.97312.950-0.470-0.4700.0000.0000.0000.000