Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: ZN69N

Calculation Name: 5AWE-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 5AWE

Chain ID: A

ChEMBL ID:

UniProt ID: Q5SK23

Base Structure: X-ray

Registration Date: 2023-09-26

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 210
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2005872.191492
FMO2-HF: Nuclear repulsion 1925692.340158
FMO2-HF: Total energy -80179.851334
FMO2-MP2: Total energy -80411.164539


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-23.36-18.98415.459-8.529-11.306-0.073
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.022 / q_NPA : -0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3VAL0-0.011-0.0173.877-0.2711.342-0.009-0.856-0.7480.004
4A4ARG10.7540.8146.5102.3882.3880.0000.0000.0000.000
5A5ASP-1-0.820-0.8851.826-14.931-18.46510.697-4.259-2.904-0.052
6A6TRP0-0.033-0.0202.607-0.6400.3430.183-0.317-0.849-0.001
7A7MET0-0.076-0.0217.1830.3460.3460.0000.0000.0000.000
8A8THR00.0070.01310.2950.1400.1400.0000.0000.0000.000
9A9LYS10.8500.88913.4820.5860.5860.0000.0000.0000.000
10A10ASP-1-0.860-0.90514.895-0.469-0.4690.0000.0000.0000.000
11A11PRO0-0.0110.01017.2910.0550.0550.0000.0000.0000.000
12A12VAL00.001-0.00219.7150.0190.0190.0000.0000.0000.000
13A13VAL00.0100.00122.645-0.027-0.0270.0000.0000.0000.000
14A14VAL0-0.018-0.01224.9600.0290.0290.0000.0000.0000.000
15A15ALA00.0650.04528.461-0.018-0.0180.0000.0000.0000.000
16A16PRO00.0560.01830.8370.0100.0100.0000.0000.0000.000
17A17ASP-1-0.822-0.88032.640-0.187-0.1870.0000.0000.0000.000
18A18THR0-0.031-0.01832.8120.0130.0130.0000.0000.0000.000
19A19PRO00.0330.01034.931-0.004-0.0040.0000.0000.0000.000
20A20VAL00.0510.02033.757-0.006-0.0060.0000.0000.0000.000
21A21LEU0-0.002-0.01333.835-0.003-0.0030.0000.0000.0000.000
22A22GLU-1-0.914-0.96134.414-0.145-0.1450.0000.0000.0000.000
23A23ALA00.0060.00929.954-0.006-0.0060.0000.0000.0000.000
24A24ILE0-0.017-0.00529.752-0.006-0.0060.0000.0000.0000.000
25A25ARG10.9060.96130.8200.1150.1150.0000.0000.0000.000
26A26LEU00.0520.02527.9080.0030.0030.0000.0000.0000.000
27A27LEU0-0.005-0.00124.703-0.010-0.0100.0000.0000.0000.000
28A28LYS10.9420.96926.5140.0980.0980.0000.0000.0000.000
29A29GLU-1-0.907-0.93428.328-0.140-0.1400.0000.0000.0000.000
30A30LYS10.8570.91324.4720.1860.1860.0000.0000.0000.000
31A31GLY0-0.0020.01423.732-0.013-0.0130.0000.0000.0000.000
32A32PHE00.0190.01919.154-0.007-0.0070.0000.0000.0000.000
33A33ARG10.8820.91321.8340.2020.2020.0000.0000.0000.000
34A34ARG10.8980.97818.0810.4150.4150.0000.0000.0000.000
35A35LEU00.0090.01622.013-0.013-0.0130.0000.0000.0000.000
36A36PRO00.0200.01420.4700.0080.0080.0000.0000.0000.000
37A37VAL0-0.005-0.00223.1300.0210.0210.0000.0000.0000.000
38A38MET0-0.0050.00923.871-0.032-0.0320.0000.0000.0000.000
39A39GLU-1-0.791-0.89827.334-0.216-0.2160.0000.0000.0000.000
40A40GLY0-0.016-0.00729.722-0.015-0.0150.0000.0000.0000.000
41A41GLY0-0.0100.00528.2580.0010.0010.0000.0000.0000.000
42A42ARG10.8150.88125.3990.3670.3670.0000.0000.0000.000
43A43LEU00.0340.00220.6600.0240.0240.0000.0000.0000.000
44A44VAL0-0.062-0.03124.6480.0050.0050.0000.0000.0000.000
45A45GLY00.0530.01225.9900.0250.0250.0000.0000.0000.000
46A46LEU0-0.046-0.01121.165-0.030-0.0300.0000.0000.0000.000
47A47VAL00.0370.04124.6440.0210.0210.0000.0000.0000.000
48A48THR0-0.042-0.07823.113-0.019-0.0190.0000.0000.0000.000
49A49ASP-1-0.807-0.89825.560-0.144-0.1440.0000.0000.0000.000
50A50LYS10.8450.89927.3760.1750.1750.0000.0000.0000.000
51A51ASP-1-0.816-0.86027.025-0.248-0.2480.0000.0000.0000.000
52A52LEU0-0.019-0.01428.9680.0080.0080.0000.0000.0000.000
53A53LYS10.7640.85930.7750.1550.1550.0000.0000.0000.000
54A54ASP-1-0.833-0.90332.273-0.137-0.1370.0000.0000.0000.000
55A55ALA00.0020.01134.6440.0010.0010.0000.0000.0000.000
56A56MET00.0170.00435.8930.0110.0110.0000.0000.0000.000
57A57PRO0-0.014-0.01039.201-0.002-0.0020.0000.0000.0000.000
58A58SER0-0.0120.00941.5340.0040.0040.0000.0000.0000.000
59A59LYS10.8730.92643.7300.0820.0820.0000.0000.0000.000
60A60ALA00.0220.01547.505-0.002-0.0020.0000.0000.0000.000
61A61THR00.030-0.00750.9460.0020.0020.0000.0000.0000.000
62A62THR0-0.064-0.05051.162-0.005-0.0050.0000.0000.0000.000
63A63LEU0-0.0180.00646.4710.0030.0030.0000.0000.0000.000
64A64SER00.010-0.01850.4210.0020.0020.0000.0000.0000.000
65A65VAL00.026-0.00647.577-0.004-0.0040.0000.0000.0000.000
66A66TRP00.0430.01647.866-0.004-0.0040.0000.0000.0000.000
67A67GLU-1-0.777-0.82648.918-0.077-0.0770.0000.0000.0000.000
68A68MET00.0250.01442.802-0.004-0.0040.0000.0000.0000.000
69A69ASN0-0.032-0.01644.246-0.006-0.0060.0000.0000.0000.000
70A70TYR00.0780.03044.336-0.007-0.0070.0000.0000.0000.000
71A71LEU0-0.026-0.00843.776-0.004-0.0040.0000.0000.0000.000
72A72LEU00.0330.00938.878-0.006-0.0060.0000.0000.0000.000
73A73ALA0-0.059-0.03439.909-0.007-0.0070.0000.0000.0000.000
74A74LYS10.7950.89241.9500.1070.1070.0000.0000.0000.000
75A75LEU00.0000.03836.971-0.003-0.0030.0000.0000.0000.000
76A76THR0-0.045-0.03936.329-0.005-0.0050.0000.0000.0000.000
77A77VAL00.015-0.01029.759-0.004-0.0040.0000.0000.0000.000
78A78ARG10.7470.80032.2780.1990.1990.0000.0000.0000.000
79A79GLU-1-0.866-0.90334.046-0.160-0.1600.0000.0000.0000.000
80A80VAL0-0.037-0.01731.7370.0050.0050.0000.0000.0000.000
81A81MET0-0.085-0.01528.488-0.018-0.0180.0000.0000.0000.000
82A82ALA00.0370.02825.8330.0040.0040.0000.0000.0000.000
83A83ARG10.9110.93626.2240.2690.2690.0000.0000.0000.000
84A84PRO0-0.008-0.00324.7980.0240.0240.0000.0000.0000.000
85A85VAL0-0.020-0.00220.528-0.001-0.0010.0000.0000.0000.000
86A86VAL0-0.0020.00918.204-0.025-0.0250.0000.0000.0000.000
87A87THR0-0.026-0.03016.3630.0050.0050.0000.0000.0000.000
88A88VAL00.0130.01010.752-0.023-0.0230.0000.0000.0000.000
89A89GLU-1-0.754-0.86311.775-1.354-1.3540.0000.0000.0000.000
90A90ALA00.024-0.00510.407-0.287-0.2870.0000.0000.0000.000
91A91ASP-1-0.836-0.9078.357-2.269-2.2690.0000.0000.0000.000
92A92ALA0-0.0130.0148.493-0.112-0.1120.0000.0000.0000.000
93A93PRO00.0410.0234.321-0.833-0.684-0.001-0.063-0.0850.000
94A94LEU0-0.004-0.0013.2860.5911.8680.061-0.453-0.8850.001
95A95GLU-1-0.831-0.9542.669-10.351-7.7632.549-2.046-3.091-0.027
96A96LYS10.8160.8985.9382.1362.1360.0000.0000.0000.000
97A97ALA00.0390.0118.3820.4060.4060.0000.0000.0000.000
98A98ALA0-0.026-0.0177.9750.3310.3310.0000.0000.0000.000
99A99LEU00.0080.0049.6470.2440.2440.0000.0000.0000.000
100A100LEU0-0.008-0.00311.7610.1530.1530.0000.0000.0000.000
101A101MET0-0.083-0.02111.5130.1630.1630.0000.0000.0000.000
102A102GLU-1-0.965-0.98013.782-0.273-0.2730.0000.0000.0000.000
103A103GLU-1-0.771-0.85115.552-0.520-0.5200.0000.0000.0000.000
104A104ARG10.7570.84417.5700.5980.5980.0000.0000.0000.000
105A105LYS10.9340.97118.9010.2620.2620.0000.0000.0000.000
106A106ILE0-0.0080.02218.3660.0390.0390.0000.0000.0000.000
107A107GLY00.012-0.01017.301-0.039-0.0390.0000.0000.0000.000
108A108GLY0-0.040-0.06515.1970.0230.0230.0000.0000.0000.000
109A109LEU0-0.0320.00112.7380.0620.0620.0000.0000.0000.000
110A110PRO0-0.001-0.00314.529-0.065-0.0650.0000.0000.0000.000
111A111VAL00.0030.01311.062-0.071-0.0710.0000.0000.0000.000
112A112MET00.0040.01114.1360.1360.1360.0000.0000.0000.000
113A113GLU-1-0.822-0.90314.498-1.140-1.1400.0000.0000.0000.000
114A114GLY00.004-0.00316.6080.1040.1040.0000.0000.0000.000
115A115GLU-1-0.812-0.88119.166-0.476-0.4760.0000.0000.0000.000
116A116ARG10.9080.96418.8010.6030.6030.0000.0000.0000.000
117A117LEU00.0370.00817.957-0.077-0.0770.0000.0000.0000.000
118A118VAL0-0.056-0.02813.9120.0550.0550.0000.0000.0000.000
119A119GLY00.0250.00413.9370.0150.0150.0000.0000.0000.000
120A120ILE0-0.064-0.02314.4130.0380.0380.0000.0000.0000.000
121A121ILE00.0340.0277.718-0.007-0.0070.0000.0000.0000.000
122A122THR0-0.012-0.03712.1810.1110.1110.0000.0000.0000.000
123A123VAL00.0930.02711.798-0.056-0.0560.0000.0000.0000.000
124A124THR0-0.064-0.03112.7420.0830.0830.0000.0000.0000.000
125A125ASP-1-0.760-0.8339.332-0.399-0.3990.0000.0000.0000.000
126A126VAL00.0350.0237.8490.1140.1140.0000.0000.0000.000
127A127LEU0-0.018-0.0088.1010.2390.2390.0000.0000.0000.000
128A128ARG10.8180.9019.5350.4700.4700.0000.0000.0000.000
129A129ALA00.0640.0374.4620.2200.309-0.001-0.010-0.0780.000
130A130PHE00.012-0.0013.7180.6650.9660.001-0.032-0.2700.000
131A131ILE0-0.057-0.0476.8210.3250.3250.0000.0000.0000.000
132A132GLU-1-0.934-0.9606.5622.3722.3720.0000.0000.0000.000
133A133VAL00.0360.0092.343-1.859-0.9491.979-0.493-2.3960.002
134A134LEU0-0.0110.0015.4750.1280.1280.0000.0000.0000.000
135A135GLY00.0630.0318.237-0.546-0.5460.0000.0000.0000.000
136A136LEU0-0.087-0.04410.559-0.386-0.3860.0000.0000.0000.000
137A137LYS10.9350.95212.826-0.768-0.7680.0000.0000.0000.000
138A138LEU0-0.0090.01011.273-0.100-0.1000.0000.0000.0000.000
139A139GLY0-0.0020.01315.491-0.047-0.0470.0000.0000.0000.000
140A140GLY00.0410.02617.9210.0670.0670.0000.0000.0000.000
141A141LEU0-0.026-0.00419.199-0.071-0.0710.0000.0000.0000.000
142A142ARG10.8350.89316.302-0.393-0.3930.0000.0000.0000.000
143A143ILE0-0.001-0.00417.979-0.087-0.0870.0000.0000.0000.000
144A144THR0-0.047-0.03918.0200.0630.0630.0000.0000.0000.000
145A145VAL00.014-0.01018.748-0.032-0.0320.0000.0000.0000.000
146A146ASP-1-0.738-0.81619.9740.2700.2700.0000.0000.0000.000
147A147ILE00.0300.02718.014-0.008-0.0080.0000.0000.0000.000
148A148PRO00.0310.00621.981-0.020-0.0200.0000.0000.0000.000
149A149ASP-1-0.921-0.95521.0940.1870.1870.0000.0000.0000.000
150A150VAL00.0100.00821.825-0.016-0.0160.0000.0000.0000.000
151A151PRO00.011-0.01819.8400.0280.0280.0000.0000.0000.000
152A152GLY0-0.0050.00719.7420.0350.0350.0000.0000.0000.000
153A153ALA00.0110.01121.3240.0260.0260.0000.0000.0000.000
154A154LEU00.0210.00813.9390.0230.0230.0000.0000.0000.000
155A155ALA00.0130.00018.3310.0580.0580.0000.0000.0000.000
156A156GLN00.0230.01719.5330.0310.0310.0000.0000.0000.000
157A157MET00.0010.01516.3040.0280.0280.0000.0000.0000.000
158A158ALA0-0.003-0.01417.4430.0230.0230.0000.0000.0000.000
159A159GLN0-0.057-0.03819.2780.0240.0240.0000.0000.0000.000
160A160ALA0-0.0010.01222.731-0.020-0.0200.0000.0000.0000.000
161A161VAL0-0.028-0.01718.228-0.005-0.0050.0000.0000.0000.000
162A162PRO00.0140.01620.920-0.005-0.0050.0000.0000.0000.000
163A163PRO0-0.003-0.00322.774-0.036-0.0360.0000.0000.0000.000
164A164ALA0-0.0280.01720.4960.0420.0420.0000.0000.0000.000
165A165ASN0-0.036-0.03915.9080.0270.0270.0000.0000.0000.000
166A166ILE00.0250.00212.402-0.006-0.0060.0000.0000.0000.000
167A167VAL0-0.050-0.01110.0100.0990.0990.0000.0000.0000.000
168A168SER0-0.039-0.0418.6370.4200.4200.0000.0000.0000.000
169A169ILE00.017-0.0029.197-0.354-0.3540.0000.0000.0000.000
170A170ALA00.0090.0199.1060.1000.1000.0000.0000.0000.000
171A171THR0-0.001-0.00111.037-0.041-0.0410.0000.0000.0000.000
172A172ALA0-0.029-0.00414.065-0.050-0.0500.0000.0000.0000.000
173A173ALA0-0.004-0.01116.619-0.051-0.0510.0000.0000.0000.000
174A174HIS00.0350.02715.4060.0200.0200.0000.0000.0000.000
175A175LEU0-0.046-0.02620.090-0.021-0.0210.0000.0000.0000.000
176A176PRO0-0.004-0.02123.8050.0020.0020.0000.0000.0000.000
177A177GLY00.0490.04425.9970.0040.0040.0000.0000.0000.000
178A178TYR0-0.052-0.02723.4900.0110.0110.0000.0000.0000.000
179A179GLN0-0.011-0.02114.864-0.030-0.0300.0000.0000.0000.000
180A180ARG10.8240.88519.427-0.204-0.2040.0000.0000.0000.000
181A181LEU00.0060.00414.1530.0100.0100.0000.0000.0000.000
182A182VAL0-0.050-0.02914.446-0.044-0.0440.0000.0000.0000.000
183A183MET00.0230.01613.4290.0910.0910.0000.0000.0000.000
184A184ARG10.8340.92912.571-1.130-1.1300.0000.0000.0000.000
185A185VAL00.0470.02014.2870.1420.1420.0000.0000.0000.000
186A186VAL00.0250.00415.744-0.063-0.0630.0000.0000.0000.000
187A187GLY00.0400.01818.2340.0080.0080.0000.0000.0000.000
188A188GLU-1-0.924-0.97120.6170.3970.3970.0000.0000.0000.000
189A189ASP-1-0.764-0.88423.7780.4100.4100.0000.0000.0000.000
190A190VAL0-0.0130.00520.2670.0120.0120.0000.0000.0000.000
191A191GLU-1-0.908-0.97022.9940.4640.4640.0000.0000.0000.000
192A192GLY00.0200.01626.171-0.023-0.0230.0000.0000.0000.000
193A193VAL0-0.037-0.00520.786-0.013-0.0130.0000.0000.0000.000
194A194PRO0-0.020-0.02324.001-0.015-0.0150.0000.0000.0000.000
195A195LYS10.8450.91225.477-0.289-0.2890.0000.0000.0000.000
196A196ARG10.7940.88023.832-0.482-0.4820.0000.0000.0000.000
197A197LEU0-0.011-0.00421.248-0.012-0.0120.0000.0000.0000.000
198A198GLU-1-0.842-0.90525.4690.2560.2560.0000.0000.0000.000
199A199ALA0-0.061-0.02328.570-0.021-0.0210.0000.0000.0000.000
200A200ALA0-0.035-0.00926.786-0.015-0.0150.0000.0000.0000.000
201A201GLY0-0.032-0.01028.801-0.007-0.0070.0000.0000.0000.000
202A202GLU-1-0.884-0.95322.6710.3440.3440.0000.0000.0000.000
203A203ARG10.8920.93025.343-0.243-0.2430.0000.0000.0000.000
204A204VAL00.001-0.00523.9270.0110.0110.0000.0000.0000.000
205A205VAL0-0.109-0.04422.780-0.033-0.0330.0000.0000.0000.000
206A206ASP-1-0.780-0.86121.8460.3680.3680.0000.0000.0000.000
207A207VAL00.0440.03222.7150.0400.0400.0000.0000.0000.000
208A208ARG10.8490.93321.050-0.390-0.3900.0000.0000.0000.000
209A209PRO00.0700.02521.7560.0460.0460.0000.0000.0000.000
210A210GLY0-0.0300.00217.8540.0030.0030.0000.0000.0000.000