FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 14K7Z

Calculation Name: 1XQR-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1XQR

Chain ID: A

ChEMBL ID:

UniProt ID: Q9NZL4

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 268
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3481063.249582
FMO2-HF: Nuclear repulsion 3372325.759477
FMO2-HF: Total energy -108737.490105
FMO2-MP2: Total energy -109042.107134


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:83:MET)


Summations of interaction energy for fragment #1(A:83:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-39.114-28.5918.188-7.175-11.534-0.039
Interaction energy analysis for fragmet #1(A:83:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.079 / q_NPA : -0.045
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A85GLY00.0340.0402.6380.0673.1700.137-1.606-1.634-0.003
4A86GLN0-0.013-0.0063.864-0.408-0.2260.003-0.087-0.0970.000
5A87ARG10.8710.9095.686-1.746-1.7460.0000.0000.0000.000
6A88GLY00.026-0.0016.7850.8610.8610.0000.0000.0000.000
7A89GLU-1-0.783-0.8826.518-1.709-1.7090.0000.0000.0000.000
8A90VAL00.0220.0072.437-0.0250.0333.808-0.787-3.0780.000
9A91GLU-1-0.852-0.9184.9154.6594.810-0.001-0.007-0.1420.000
10A92GLN00.0150.0268.129-0.117-0.1170.0000.0000.0000.000
11A93MET00.0280.0265.6600.0640.0640.0000.0000.0000.000
12A94LYS10.9100.9423.256-14.344-13.3500.759-0.541-1.2120.007
13A95SER0-0.065-0.0318.084-0.307-0.3070.0000.0000.0000.000
14A96CYS00.0040.01210.953-0.221-0.2210.0000.0000.0000.000
15A97LEU00.001-0.0017.703-0.121-0.1210.0000.0000.0000.000
16A98ARG10.9260.9599.220-2.724-2.7240.0000.0000.0000.000
17A99VAL00.0510.03013.580-0.119-0.1190.0000.0000.0000.000
18A100LEU0-0.0060.01313.607-0.077-0.0770.0000.0000.0000.000
19A101SER0-0.024-0.00514.406-0.150-0.1500.0000.0000.0000.000
20A102GLN0-0.0180.01016.488-0.101-0.1010.0000.0000.0000.000
21A103PRO0-0.032-0.00919.492-0.048-0.0480.0000.0000.0000.000
22A104MET00.0180.00722.9270.0130.0130.0000.0000.0000.000
23A105PRO00.0210.00925.3720.0030.0030.0000.0000.0000.000
24A106PRO0-0.0170.00027.436-0.025-0.0250.0000.0000.0000.000
25A107THR0-0.034-0.02429.976-0.023-0.0230.0000.0000.0000.000
26A108ALA0-0.020-0.00431.0930.0120.0120.0000.0000.0000.000
27A109GLY00.0170.02233.178-0.016-0.0160.0000.0000.0000.000
28A110GLU-1-0.937-0.98033.6650.1710.1710.0000.0000.0000.000
29A111ALA0-0.020-0.01533.2540.0040.0040.0000.0000.0000.000
30A112GLU-1-0.859-0.94830.3210.2530.2530.0000.0000.0000.000
31A113GLN0-0.0030.00728.7510.0380.0380.0000.0000.0000.000
32A114ALA00.0110.00528.1330.0120.0120.0000.0000.0000.000
33A115ALA0-0.014-0.00127.7290.0030.0030.0000.0000.0000.000
34A116ASP-1-0.721-0.85124.0600.4630.4630.0000.0000.0000.000
35A117GLN0-0.077-0.05623.3200.0330.0330.0000.0000.0000.000
36A118GLN00.006-0.00523.4440.0060.0060.0000.0000.0000.000
37A119GLU-1-0.949-0.95620.7250.4690.4690.0000.0000.0000.000
38A120ARG10.7710.85618.987-0.505-0.5050.0000.0000.0000.000
39A121GLU-1-0.898-0.96918.8080.1880.1880.0000.0000.0000.000
40A122GLY00.0650.03719.542-0.034-0.0340.0000.0000.0000.000
41A123ALA0-0.012-0.02314.723-0.003-0.0030.0000.0000.0000.000
42A124LEU0-0.059-0.04514.669-0.012-0.0120.0000.0000.0000.000
43A125GLU-1-0.874-0.93215.8030.0280.0280.0000.0000.0000.000
44A126LEU00.0270.02713.481-0.045-0.0450.0000.0000.0000.000
45A127LEU0-0.046-0.0289.609-0.049-0.0490.0000.0000.0000.000
46A128ALA0-0.028-0.01711.998-0.168-0.1680.0000.0000.0000.000
47A129ASP-1-0.895-0.93514.569-0.223-0.2230.0000.0000.0000.000
48A130LEU0-0.039-0.0348.756-0.109-0.1090.0000.0000.0000.000
49A131CYS0-0.098-0.05710.275-0.302-0.3020.0000.0000.0000.000
50A132GLU-1-0.890-0.93711.520-0.524-0.5240.0000.0000.0000.000
51A133ASN0-0.0210.0139.887-0.306-0.3060.0000.0000.0000.000
52A134MET00.034-0.00810.286-0.185-0.1850.0000.0000.0000.000
53A135ASP-1-0.901-0.9456.482-3.457-3.4570.0000.0000.0000.000
54A136ASN0-0.045-0.0365.552-0.406-0.4060.0000.0000.0000.000
55A137ALA00.0430.0336.5980.3500.3500.0000.0000.0000.000
56A138ALA00.0330.0096.3250.4950.4950.0000.0000.0000.000
57A139ASP-1-0.787-0.9082.520-18.311-13.4263.180-3.903-4.163-0.046
58A140PHE00.0350.0014.4391.7681.909-0.001-0.006-0.1340.000
59A141CYS0-0.094-0.0447.0880.5960.5960.0000.0000.0000.000
60A142GLN00.0170.0194.077-0.736-0.514-0.001-0.016-0.2050.000
61A143LEU0-0.070-0.0333.5760.4621.2490.304-0.222-0.8690.003
62A144SER0-0.018-0.0106.888-0.192-0.1920.0000.0000.0000.000
63A145GLY00.0300.0169.508-0.101-0.1010.0000.0000.0000.000
64A146MET00.0420.01811.182-0.097-0.0970.0000.0000.0000.000
65A147HIS00.0120.00113.2770.0010.0010.0000.0000.0000.000
66A148LEU0-0.0200.00114.122-0.060-0.0600.0000.0000.0000.000
67A149LEU00.0500.00514.106-0.058-0.0580.0000.0000.0000.000
68A150VAL0-0.051-0.02417.215-0.050-0.0500.0000.0000.0000.000
69A151GLY0-0.027-0.01418.972-0.029-0.0290.0000.0000.0000.000
70A152ARG10.8680.93719.391-0.625-0.6250.0000.0000.0000.000
71A153TYR0-0.035-0.03618.013-0.057-0.0570.0000.0000.0000.000
72A154LEU0-0.004-0.00121.162-0.040-0.0400.0000.0000.0000.000
73A155GLU-1-0.841-0.90223.3630.1750.1750.0000.0000.0000.000
74A156ALA00.0380.04523.7060.0080.0080.0000.0000.0000.000
75A157GLY00.0490.02425.733-0.028-0.0280.0000.0000.0000.000
76A158ALA00.0410.03026.644-0.023-0.0230.0000.0000.0000.000
77A159ALA00.033-0.00326.5560.0050.0050.0000.0000.0000.000
78A160GLY0-0.011-0.00626.194-0.012-0.0120.0000.0000.0000.000
79A161LEU00.0520.03721.273-0.003-0.0030.0000.0000.0000.000
80A162ARG10.7880.89022.161-0.148-0.1480.0000.0000.0000.000
81A163TRP0-0.020-0.01723.125-0.021-0.0210.0000.0000.0000.000
82A164ARG10.8280.91419.946-0.171-0.1710.0000.0000.0000.000
83A165ALA00.0490.03018.422-0.015-0.0150.0000.0000.0000.000
84A166ALA0-0.019-0.02018.802-0.031-0.0310.0000.0000.0000.000
85A167GLN00.0380.00419.760-0.052-0.0520.0000.0000.0000.000
86A168LEU00.0220.02712.857-0.059-0.0590.0000.0000.0000.000
87A169ILE00.006-0.00315.732-0.070-0.0700.0000.0000.0000.000
88A170GLY0-0.013-0.00617.257-0.059-0.0590.0000.0000.0000.000
89A171THR0-0.017-0.01115.094-0.041-0.0410.0000.0000.0000.000
90A172CYS0-0.035-0.00412.546-0.087-0.0870.0000.0000.0000.000
91A173SER0-0.056-0.03114.218-0.104-0.1040.0000.0000.0000.000
92A174GLN00.0560.02716.639-0.009-0.0090.0000.0000.0000.000
93A175ASN0-0.021-0.01817.660-0.065-0.0650.0000.0000.0000.000
94A176VAL00.0560.03612.660-0.086-0.0860.0000.0000.0000.000
95A177ALA00.0300.01416.0450.0550.0550.0000.0000.0000.000
96A178ALA00.0690.02113.1640.0530.0530.0000.0000.0000.000
97A179ILE0-0.021-0.00810.6420.1140.1140.0000.0000.0000.000
98A180GLN0-0.011-0.01114.3190.1380.1380.0000.0000.0000.000
99A181GLU-1-0.924-0.95717.613-0.299-0.2990.0000.0000.0000.000
100A182GLN0-0.016-0.00711.1210.2540.2540.0000.0000.0000.000
101A183VAL00.004-0.01815.6800.0920.0920.0000.0000.0000.000
102A184LEU0-0.052-0.02317.7970.0590.0590.0000.0000.0000.000
103A185GLY0-0.017-0.00319.8020.0280.0280.0000.0000.0000.000
104A186LEU0-0.047-0.02015.2740.0490.0490.0000.0000.0000.000
105A187GLY0-0.0230.00019.9130.0320.0320.0000.0000.0000.000
106A188ALA00.0230.00820.4410.0100.0100.0000.0000.0000.000
107A189LEU00.0360.01922.5180.0020.0020.0000.0000.0000.000
108A190ARG10.9730.99725.591-0.058-0.0580.0000.0000.0000.000
109A191LYS10.8400.90323.466-0.193-0.1930.0000.0000.0000.000
110A192LEU00.0430.02422.4040.0040.0040.0000.0000.0000.000
111A193LEU00.0310.01926.425-0.006-0.0060.0000.0000.0000.000
112A194ARG10.8500.91128.344-0.123-0.1230.0000.0000.0000.000
113A195LEU0-0.0200.00725.563-0.002-0.0020.0000.0000.0000.000
114A196LEU00.0100.00829.800-0.002-0.0020.0000.0000.0000.000
115A197ASP-1-0.867-0.92831.3480.0120.0120.0000.0000.0000.000
116A198ARG10.9170.95033.537-0.054-0.0540.0000.0000.0000.000
117A199ASP-1-0.798-0.88030.3810.1000.1000.0000.0000.0000.000
118A200ALA00.0310.01633.209-0.009-0.0090.0000.0000.0000.000
119A201CYS0-0.073-0.00430.128-0.011-0.0110.0000.0000.0000.000
120A202ASP-1-0.795-0.91832.1960.0100.0100.0000.0000.0000.000
121A203THR0-0.062-0.04727.487-0.017-0.0170.0000.0000.0000.000
122A204VAL00.025-0.00527.157-0.012-0.0120.0000.0000.0000.000
123A205ARG10.8940.94627.852-0.022-0.0220.0000.0000.0000.000
124A206VAL0-0.036-0.01828.441-0.015-0.0150.0000.0000.0000.000
125A207LYS10.8870.95623.9430.0450.0450.0000.0000.0000.000
126A208ALA00.0410.02024.584-0.015-0.0150.0000.0000.0000.000
127A209LEU0-0.025-0.00226.000-0.013-0.0130.0000.0000.0000.000
128A210PHE0-0.0160.00520.645-0.003-0.0030.0000.0000.0000.000
129A211ALA00.0600.01221.623-0.027-0.0270.0000.0000.0000.000
130A212ILE0-0.025-0.02022.892-0.021-0.0210.0000.0000.0000.000
131A213SER0-0.018-0.01925.662-0.017-0.0170.0000.0000.0000.000
132A214CYS0-0.047-0.02220.833-0.027-0.0270.0000.0000.0000.000
133A215LEU0-0.028-0.00219.526-0.027-0.0270.0000.0000.0000.000
134A216VAL0-0.015-0.01722.8020.0010.0010.0000.0000.0000.000
135A217ARG10.9290.98625.7750.2240.2240.0000.0000.0000.000
136A218GLU-1-0.937-0.95523.472-0.318-0.3180.0000.0000.0000.000
137A219GLN0-0.017-0.00721.2060.0120.0120.0000.0000.0000.000
138A220GLU-1-0.780-0.90224.995-0.134-0.1340.0000.0000.0000.000
139A221ALA00.0360.01224.9080.0260.0260.0000.0000.0000.000
140A222GLY00.0470.01325.4580.0260.0260.0000.0000.0000.000
141A223LEU00.0040.01026.1730.0270.0270.0000.0000.0000.000
142A224LEU00.0480.02329.5550.0220.0220.0000.0000.0000.000
143A225GLN0-0.063-0.02926.0570.0100.0100.0000.0000.0000.000
144A226PHE00.0190.00829.3860.0180.0180.0000.0000.0000.000
145A227LEU00.0060.01030.7660.0120.0120.0000.0000.0000.000
146A228ARG10.8610.90729.5940.0610.0610.0000.0000.0000.000
147A229LEU0-0.119-0.05228.7200.0150.0150.0000.0000.0000.000
148A230ASP-1-0.827-0.88333.297-0.006-0.0060.0000.0000.0000.000
149A231GLY00.0130.00333.0410.0020.0020.0000.0000.0000.000
150A232PHE00.0430.00433.952-0.002-0.0020.0000.0000.0000.000
151A233SER00.005-0.02236.764-0.003-0.0030.0000.0000.0000.000
152A234VAL0-0.088-0.02633.1720.0040.0040.0000.0000.0000.000
153A235LEU0-0.006-0.00633.0280.0010.0010.0000.0000.0000.000
154A236MET00.0360.01535.997-0.003-0.0030.0000.0000.0000.000
155A237ARG10.9120.94638.142-0.002-0.0020.0000.0000.0000.000
156A238ALA0-0.039-0.01735.5620.0040.0040.0000.0000.0000.000
157A239MET0-0.045-0.00737.563-0.002-0.0020.0000.0000.0000.000
158A240GLN0-0.0030.00839.944-0.002-0.0020.0000.0000.0000.000
159A241GLN0-0.029-0.00938.0900.0080.0080.0000.0000.0000.000
160A242GLN00.0480.00941.603-0.009-0.0090.0000.0000.0000.000
161A243VAL00.0010.02836.432-0.005-0.0050.0000.0000.0000.000
162A244GLN00.1130.02038.481-0.001-0.0010.0000.0000.0000.000
163A245LYS10.9250.97531.1480.0370.0370.0000.0000.0000.000
164A246LEU00.0130.00432.623-0.010-0.0100.0000.0000.0000.000
165A247LYS10.9190.99635.0620.0280.0280.0000.0000.0000.000
166A248VAL00.0600.02635.976-0.004-0.0040.0000.0000.0000.000
167A249LYS10.9070.94530.6620.0790.0790.0000.0000.0000.000
168A250SER0-0.008-0.01533.210-0.008-0.0080.0000.0000.0000.000
169A251ALA00.0440.02034.677-0.005-0.0050.0000.0000.0000.000
170A252PHE00.0370.03131.124-0.008-0.0080.0000.0000.0000.000
171A253LEU0-0.041-0.01729.723-0.012-0.0120.0000.0000.0000.000
172A254LEU00.034-0.00232.981-0.007-0.0070.0000.0000.0000.000
173A255GLN00.0670.04635.873-0.003-0.0030.0000.0000.0000.000
174A256ASN0-0.036-0.03631.859-0.011-0.0110.0000.0000.0000.000
175A257LEU0-0.049-0.02630.262-0.008-0.0080.0000.0000.0000.000
176A258LEU0-0.025-0.01933.622-0.001-0.0010.0000.0000.0000.000
177A259VAL0-0.047-0.00335.3120.0010.0010.0000.0000.0000.000
178A260GLY00.002-0.00232.663-0.004-0.0040.0000.0000.0000.000
179A261HIS10.8130.92029.6430.1730.1730.0000.0000.0000.000
180A262PRO00.0380.01434.9960.0140.0140.0000.0000.0000.000
181A263GLU-1-0.857-0.94134.576-0.133-0.1330.0000.0000.0000.000
182A264HIS0-0.027-0.01033.7110.0180.0180.0000.0000.0000.000
183A265LYS10.9130.98038.7810.1150.1150.0000.0000.0000.000
184A266GLY00.0400.01741.8560.0060.0060.0000.0000.0000.000
185A267THR0-0.002-0.01140.0400.0070.0070.0000.0000.0000.000
186A268LEU00.0260.00738.3020.0060.0060.0000.0000.0000.000
187A269CYS0-0.044-0.00842.2780.0040.0040.0000.0000.0000.000
188A270SER00.000-0.00245.5490.0050.0050.0000.0000.0000.000
189A271MET0-0.093-0.02939.6190.0020.0020.0000.0000.0000.000
190A272GLY00.0280.03645.1330.0030.0030.0000.0000.0000.000
191A273MET0-0.037-0.02140.3450.0000.0000.0000.0000.0000.000
192A274VAL00.0500.01845.094-0.002-0.0020.0000.0000.0000.000
193A275GLN00.0930.03447.885-0.003-0.0030.0000.0000.0000.000
194A276GLN0-0.039-0.01745.1590.0030.0030.0000.0000.0000.000
195A277LEU00.007-0.00142.2420.0000.0000.0000.0000.0000.000
196A278VAL00.0340.01646.243-0.001-0.0010.0000.0000.0000.000
197A279ALA0-0.013-0.00948.8110.0010.0010.0000.0000.0000.000
198A280LEU0-0.045-0.02743.2600.0020.0020.0000.0000.0000.000
199A281VAL00.0260.03447.4490.0000.0000.0000.0000.0000.000
200A282ARG10.8620.93849.5440.0340.0340.0000.0000.0000.000
201A283THR0-0.124-0.06847.8370.0030.0030.0000.0000.0000.000
202A284GLU-1-0.907-0.95549.481-0.036-0.0360.0000.0000.0000.000
203A285HIS0-0.052-0.04048.5600.0010.0010.0000.0000.0000.000
204A286SER0-0.002-0.01344.5920.0000.0000.0000.0000.0000.000
205A287PRO00.0580.01141.682-0.001-0.0010.0000.0000.0000.000
206A288PHE0-0.037-0.02340.283-0.005-0.0050.0000.0000.0000.000
207A289HIS00.0270.01742.145-0.005-0.0050.0000.0000.0000.000
208A290GLU-1-0.865-0.91841.073-0.111-0.1110.0000.0000.0000.000
209A291HIS0-0.013-0.02238.1180.0000.0000.0000.0000.0000.000
210A292VAL0-0.065-0.02541.010-0.002-0.0020.0000.0000.0000.000
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