FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: 14L1Z

Calculation Name: 1Q88-A-Xray372

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 1Q88

Chain ID: A

ChEMBL ID:
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UniProt ID: Q95VR4

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 192
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2227188.119384
FMO2-HF: Nuclear repulsion 2148327.512026
FMO2-HF: Total energy -78860.607358
FMO2-MP2: Total energy -79088.365144


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:148:MET)


Summations of interaction energy for fragment #1(A:148:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-18.952-7.20910.398-8.075-14.066-0.052
Interaction energy analysis for fragmet #1(A:148:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.052 / q_NPA : -0.020
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A150ILE00.0050.0233.793-0.8360.990-0.022-0.858-0.9460.001
4A151GLY00.0660.0225.9730.1350.1350.0000.0000.0000.000
5A152ASN0-0.026-0.0029.0490.0490.0490.0000.0000.0000.000
6A153SER0-0.015-0.02510.8880.0210.0210.0000.0000.0000.000
7A154THR0-0.022-0.03212.6550.0140.0140.0000.0000.0000.000
8A155PRO00.0700.01912.569-0.009-0.0090.0000.0000.0000.000
9A156ASN0-0.015-0.00413.146-0.002-0.0020.0000.0000.0000.000
10A157GLU-1-0.731-0.81812.7110.0980.0980.0000.0000.0000.000
11A158GLN0-0.029-0.0268.4550.0880.0880.0000.0000.0000.000
12A159GLU-1-0.799-0.8699.2610.1430.1430.0000.0000.0000.000
13A160THR0-0.057-0.03811.6840.0360.0360.0000.0000.0000.000
14A161PHE0-0.002-0.0105.982-0.027-0.0270.0000.0000.0000.000
15A162ARG10.8110.8735.9220.3460.3460.0000.0000.0000.000
16A163ALA00.0530.0339.3790.0980.0980.0000.0000.0000.000
17A164LYS10.8500.91112.758-0.281-0.2810.0000.0000.0000.000
18A165VAL0-0.0150.0007.4610.0510.0510.0000.0000.0000.000
19A166ASP-1-0.868-0.93810.8150.4960.4960.0000.0000.0000.000
20A167GLU-1-0.890-0.92012.6330.2320.2320.0000.0000.0000.000
21A168ILE0-0.001-0.00913.127-0.046-0.0460.0000.0000.0000.000
22A169TRP00.0020.00111.2450.0100.0100.0000.0000.0000.000
23A170PHE0-0.0150.01513.337-0.075-0.0750.0000.0000.0000.000
24A171ARG10.8760.93016.700-0.231-0.2310.0000.0000.0000.000
25A172LEU0-0.0170.00714.835-0.031-0.0310.0000.0000.0000.000
26A173THR0-0.035-0.04414.690-0.036-0.0360.0000.0000.0000.000
27A174GLN0-0.030-0.01418.021-0.015-0.0150.0000.0000.0000.000
28A175LYS10.8590.93816.275-0.166-0.1660.0000.0000.0000.000
29A176THR00.0340.00816.0510.0350.0350.0000.0000.0000.000
30A177ASP-1-0.822-0.90910.9340.4920.4920.0000.0000.0000.000
31A178GLY0-0.036-0.01112.329-0.049-0.0490.0000.0000.0000.000
32A179THR00.000-0.01211.1810.0780.0780.0000.0000.0000.000
33A180VAL0-0.029-0.00713.318-0.018-0.0180.0000.0000.0000.000
34A181MET00.0460.01914.361-0.016-0.0160.0000.0000.0000.000
35A182ARG10.8520.91012.5130.1250.1250.0000.0000.0000.000
36A183ASP-1-0.875-0.94014.9720.0250.0250.0000.0000.0000.000
37A184PHE0-0.030-0.00517.7010.0090.0090.0000.0000.0000.000
38A185LEU00.0240.00911.1320.0170.0170.0000.0000.0000.000
39A186ILE0-0.0160.00113.4550.0240.0240.0000.0000.0000.000
40A187GLU-1-0.816-0.88916.2070.0750.0750.0000.0000.0000.000
41A188LYS10.7900.87617.803-0.114-0.1140.0000.0000.0000.000
42A189ALA00.0300.01614.7680.0110.0110.0000.0000.0000.000
43A190ALA0-0.015-0.01116.824-0.007-0.0070.0000.0000.0000.000
44A191GLU-1-0.859-0.92419.5900.0840.0840.0000.0000.0000.000
45A192TYR0-0.059-0.01717.955-0.016-0.0160.0000.0000.0000.000
46A193PHE00.016-0.00413.3180.0230.0230.0000.0000.0000.000
47A194LYS10.7810.89918.981-0.085-0.0850.0000.0000.0000.000
48A195GLN00.0120.00122.0220.0130.0130.0000.0000.0000.000
49A196PRO0-0.0050.00224.841-0.004-0.0040.0000.0000.0000.000
50A197GLU-1-0.815-0.91728.0410.0520.0520.0000.0000.0000.000
51A198GLN0-0.007-0.00721.7160.0050.0050.0000.0000.0000.000
52A199PRO00.0150.00026.7790.0060.0060.0000.0000.0000.000
53A200LYS10.8430.89123.790-0.064-0.0640.0000.0000.0000.000
54A201GLN0-0.021-0.02723.2590.0090.0090.0000.0000.0000.000
55A202ASN00.0160.02023.0230.0050.0050.0000.0000.0000.000
56A203ALA00.0250.02520.388-0.002-0.0020.0000.0000.0000.000
57A204ILE00.012-0.00418.8100.0100.0100.0000.0000.0000.000
58A205GLU-1-0.868-0.93018.451-0.008-0.0080.0000.0000.0000.000
59A206VAL00.0050.00317.189-0.017-0.0170.0000.0000.0000.000
60A207ILE00.0040.00913.598-0.009-0.0090.0000.0000.0000.000
61A208SER0-0.0020.00813.668-0.012-0.0120.0000.0000.0000.000
62A209ALA0-0.0060.00914.217-0.037-0.0370.0000.0000.0000.000
63A210ILE00.0120.01210.824-0.048-0.0480.0000.0000.0000.000
64A211MET0-0.047-0.0069.443-0.005-0.0050.0000.0000.0000.000
65A212ALA0-0.0170.01010.385-0.010-0.0100.0000.0000.0000.000
66A213PRO0-0.032-0.0378.442-0.110-0.1100.0000.0000.0000.000
67A214GLN0-0.037-0.03311.5920.0860.0860.0000.0000.0000.000
68A215GLU-1-0.867-0.94014.867-0.270-0.2700.0000.0000.0000.000
69A216GLU-1-0.899-0.9269.154-0.513-0.5130.0000.0000.0000.000
70A217GLN00.022-0.00813.3780.0490.0490.0000.0000.0000.000
71A218THR0-0.060-0.02113.6740.0370.0370.0000.0000.0000.000
72A219LYS10.8510.9157.8770.1960.1960.0000.0000.0000.000
73A220SER0-0.005-0.0286.9890.1040.1040.0000.0000.0000.000
74A221LYS10.8680.9217.930-0.414-0.4140.0000.0000.0000.000
75A222ALA00.0310.0123.478-0.1260.4140.123-0.148-0.5150.001
76A223ASP-1-0.798-0.8793.9160.0361.0760.074-0.451-0.663-0.004
77A224LEU00.0540.0305.7680.0060.0060.0000.0000.0000.000
78A225TYR00.0060.0112.748-3.129-1.6941.734-0.825-2.3450.001
79A226LYS10.9530.9602.896-0.3531.0560.415-0.416-1.407-0.001
80A227PHE00.002-0.0074.673-1.118-1.0670.0160.002-0.0690.000
81A228LEU00.016-0.0068.416-0.240-0.2400.0000.0000.0000.000
82A229ALA0-0.0110.0085.982-0.291-0.2910.0000.0000.0000.000
83A230MET0-0.0450.0027.291-0.410-0.4100.0000.0000.0000.000
84A231PHE00.005-0.0089.702-0.124-0.1240.0000.0000.0000.000
85A232GLY0-0.059-0.00812.012-0.051-0.0510.0000.0000.0000.000
86A233PRO00.0530.03413.3960.0730.0730.0000.0000.0000.000
87A234TYR00.0240.01015.243-0.022-0.0220.0000.0000.0000.000
88A235GLU-1-0.873-0.95016.4340.2120.2120.0000.0000.0000.000
89A236THR0-0.008-0.00518.790-0.027-0.0270.0000.0000.0000.000
90A237ILE0-0.0200.01812.741-0.023-0.0230.0000.0000.0000.000
91A238MET00.0160.01717.115-0.030-0.0300.0000.0000.0000.000
92A239LEU0-0.0040.00019.485-0.024-0.0240.0000.0000.0000.000
93A240LYS10.8490.92915.350-0.154-0.1540.0000.0000.0000.000
94A241ILE0-0.018-0.00214.813-0.027-0.0270.0000.0000.0000.000
95A242ALA0-0.017-0.00917.366-0.028-0.0280.0000.0000.0000.000
96A243SER0-0.042-0.03320.643-0.016-0.0160.0000.0000.0000.000
97A244LEU00.0490.01614.829-0.015-0.0150.0000.0000.0000.000
98A245LEU0-0.003-0.00916.023-0.022-0.0220.0000.0000.0000.000
99A246LEU0-0.0360.00319.655-0.010-0.0100.0000.0000.0000.000
100A247ILE00.0090.00021.434-0.007-0.0070.0000.0000.0000.000
101A248SER00.0260.01319.036-0.010-0.0100.0000.0000.0000.000
102A249ASN00.012-0.00421.151-0.013-0.0130.0000.0000.0000.000
103A250ASN0-0.032-0.00723.851-0.001-0.0010.0000.0000.0000.000
104A251LYS10.8550.91023.9860.0690.0690.0000.0000.0000.000
105A252GLY0-0.0030.00624.764-0.005-0.0050.0000.0000.0000.000
106A253HIS0-0.058-0.02221.476-0.010-0.0100.0000.0000.0000.000
107A254TRP0-0.0020.02316.429-0.023-0.0230.0000.0000.0000.000
108A255LEU0-0.040-0.00813.233-0.032-0.0320.0000.0000.0000.000
109A256THR0-0.028-0.03513.0870.0330.0330.0000.0000.0000.000
110A257PHE00.040-0.01210.027-0.022-0.0220.0000.0000.0000.000
111A258ASP-1-0.859-0.8989.826-0.570-0.5700.0000.0000.0000.000
112A259PRO00.0440.0087.619-0.096-0.0960.0000.0000.0000.000
113A260GLN0-0.053-0.0409.5590.0670.0670.0000.0000.0000.000
114A261ALA00.0570.05011.2690.0830.0830.0000.0000.0000.000
115A262GLU-1-0.880-0.93111.030-0.689-0.6890.0000.0000.0000.000
116A263LYS10.9480.96512.5390.7070.7070.0000.0000.0000.000
117A264ASN0-0.022-0.01015.3540.0800.0800.0000.0000.0000.000
118A265ALA0-0.0020.02216.3350.0520.0520.0000.0000.0000.000
119A266ASN0-0.008-0.01717.7830.0110.0110.0000.0000.0000.000
120A267ASN0-0.091-0.04219.6210.0430.0430.0000.0000.0000.000
121A268GLN0-0.0170.02019.9480.0370.0370.0000.0000.0000.000
122A269ARG10.9580.95723.4750.1080.1080.0000.0000.0000.000
123A270ASP-1-0.920-0.94724.934-0.105-0.1050.0000.0000.0000.000
124A271SER0-0.002-0.02122.5460.0030.0030.0000.0000.0000.000
125A272ILE00.0220.00821.593-0.005-0.0050.0000.0000.0000.000
126A273SER0-0.004-0.00217.6360.0060.0060.0000.0000.0000.000
127A274GLY00.0330.01215.2580.0090.0090.0000.0000.0000.000
128A275TRP0-0.029-0.0169.4760.1010.1010.0000.0000.0000.000
129A276PHE00.0440.0197.3690.0750.0750.0000.0000.0000.000
130A277ASP-1-0.762-0.8646.618-1.514-1.5140.0000.0000.0000.000
131A278GLN0-0.017-0.0223.434-1.144-0.5430.022-0.124-0.5000.000
132A279ASN0-0.059-0.0372.509-7.047-4.6372.224-1.955-2.678-0.022
133A280GLU-1-0.804-0.8832.418-3.258-1.2032.580-2.474-2.161-0.028
134A281PRO00.008-0.0012.563-0.548-0.2213.233-0.821-2.7400.000
135A282ASN00.011-0.0025.1810.1240.173-0.001-0.005-0.0420.000
136A283CYS0-0.068-0.0207.9480.0790.0790.0000.0000.0000.000
137A284LEU0-0.0050.0129.566-0.152-0.1520.0000.0000.0000.000
138A285ILE00.006-0.01110.4510.0630.0630.0000.0000.0000.000
139A286LEU0-0.002-0.00113.6200.0030.0030.0000.0000.0000.000
140A287LYS10.8100.91217.1410.2300.2300.0000.0000.0000.000
141A288THR0-0.006-0.02719.1100.0110.0110.0000.0000.0000.000
142A289PRO00.0350.01022.826-0.003-0.0030.0000.0000.0000.000
143A290THR0-0.022-0.01225.5050.0060.0060.0000.0000.0000.000
144A291GLY0-0.0060.00923.4890.0090.0090.0000.0000.0000.000
145A292ILE0-0.042-0.01016.675-0.010-0.0100.0000.0000.0000.000
146A293ARG10.8460.91618.5890.1240.1240.0000.0000.0000.000
147A294LYS10.8320.8939.4920.3940.3940.0000.0000.0000.000
148A295ILE0-0.0380.00314.3220.0370.0370.0000.0000.0000.000
149A296TRP0-0.048-0.03310.559-0.032-0.0320.0000.0000.0000.000
150A297ASN00.0510.00411.2490.0060.0060.0000.0000.0000.000
151A298LYS10.8200.90612.062-0.057-0.0570.0000.0000.0000.000
152A299PRO0-0.019-0.0299.0420.0080.0080.0000.0000.0000.000
153A300LEU0-0.037-0.01112.0050.0360.0360.0000.0000.0000.000
154A301ILE0-0.0140.01114.932-0.015-0.0150.0000.0000.0000.000
155A302GLU-1-0.856-0.91517.2580.1200.1200.0000.0000.0000.000
156A303ALA0-0.030-0.03519.690-0.013-0.0130.0000.0000.0000.000
157A304THR0-0.047-0.03821.165-0.013-0.0130.0000.0000.0000.000
158A305GLY00.0050.01222.527-0.006-0.0060.0000.0000.0000.000
159A306GLN0-0.065-0.05721.8400.0030.0030.0000.0000.0000.000
160A307TYR00.0430.03717.1490.0040.0040.0000.0000.0000.000
161A308LEU0-0.0250.00716.3020.0040.0040.0000.0000.0000.000
162A309MET0-0.049-0.02016.2150.0130.0130.0000.0000.0000.000
163A310ASP-1-0.731-0.83916.408-0.049-0.0490.0000.0000.0000.000
164A311GLU-1-0.847-0.92717.224-0.053-0.0530.0000.0000.0000.000
165A312ASN0-0.135-0.07518.1250.0170.0170.0000.0000.0000.000
166A313GLY0-0.0010.00919.7420.0090.0090.0000.0000.0000.000
167A314GLU-1-0.884-0.94420.7640.0130.0130.0000.0000.0000.000
168A315LYS10.8130.90120.620-0.024-0.0240.0000.0000.0000.000
169A316TYR0-0.033-0.04820.659-0.006-0.0060.0000.0000.0000.000
170A317ASP-1-0.808-0.90821.8080.0220.0220.0000.0000.0000.000
171A318SER0-0.040-0.05821.4580.0070.0070.0000.0000.0000.000
172A319TRP00.0450.00213.906-0.020-0.0200.0000.0000.0000.000
173A320ASP-1-0.801-0.86320.934-0.016-0.0160.0000.0000.0000.000
174A321LYN00.0530.03624.548-0.006-0.0060.0000.0000.0000.000
175A322TYR0-0.0040.00219.895-0.010-0.0100.0000.0000.0000.000
176A323PHE0-0.038-0.03918.642-0.009-0.0090.0000.0000.0000.000
177A324GLU-1-0.951-0.95724.421-0.018-0.0180.0000.0000.0000.000
178A325MET0-0.030-0.02125.8320.0000.0000.0000.0000.0000.000
179A326LYS10.8610.92123.8990.0370.0370.0000.0000.0000.000
180A327PRO00.0300.03624.640-0.011-0.0110.0000.0000.0000.000
181A328ILE0-0.0160.00121.679-0.007-0.0070.0000.0000.0000.000
182A329GLU-1-0.923-0.95625.476-0.086-0.0860.0000.0000.0000.000
183A330THR0-0.009-0.01428.9810.0060.0060.0000.0000.0000.000
184A331TYR0-0.018-0.03332.177-0.003-0.0030.0000.0000.0000.000
185A332LEU00.001-0.00830.7310.0020.0020.0000.0000.0000.000
186A333THR0-0.033-0.00234.098-0.001-0.0010.0000.0000.0000.000
187A334ALA00.0160.03436.6180.0020.0020.0000.0000.0000.000
188A335TYR00.0440.00839.106-0.002-0.0020.0000.0000.0000.000
189A336PRO0-0.001-0.00541.0450.0010.0010.0000.0000.0000.000
190A337THR00.0090.01343.2380.0010.0010.0000.0000.0000.000
191A338PHE0-0.0130.00245.1980.0010.0010.0000.0000.0000.000
192A339ALA0-0.042-0.01947.4550.0020.0020.0000.0000.0000.000