FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: 15J5Z

Calculation Name: 1T3U-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1T3U

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HTW3

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 180
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -545663.040018
FMO2-HF: Nuclear repulsion 508332.763874
FMO2-HF: Total energy -37330.276144
FMO2-MP2: Total energy -37436.919559


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:6:THR)


Summations of interaction energy for fragment #1(A:6:THR)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-5.303-0.8172.302-3.188-3.602-0.008
Interaction energy analysis for fragmet #1(A:6:THR)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.065 / q_NPA : 0.051
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A7LEU0-0.0860.1054.4070.1110.3960.000-0.137-0.1480.000
5A8THR0-0.001-0.0933.856-1.389-0.075-0.013-0.720-0.5820.002
6A8THR00.0010.0865.671-0.675-0.664-0.001-0.001-0.0090.000
7A9VAL00.043-0.0986.6700.2970.2970.0000.0000.0000.000
8A9VAL0-0.0300.1078.6800.0620.0620.0000.0000.0000.000
9A10GLN00.133-0.10310.339-0.092-0.0920.0000.0000.0000.000
10A10GLN0-0.1090.09313.5520.0910.0910.0000.0000.0000.000
11A11ILE00.021-0.11613.8260.0750.0750.0000.0000.0000.000
12A11ILE0-0.1030.08812.5300.0140.0140.0000.0000.0000.000
13A12LEU00.151-0.08015.987-0.027-0.0270.0000.0000.0000.000
14A12LEU0-0.1280.07519.6970.0080.0080.0000.0000.0000.000
15A13ASP00.037-0.07619.117-0.010-0.0100.0000.0000.0000.000
16A13ASP-1-0.922-0.80721.031-0.208-0.2080.0000.0000.0000.000
17A14LYS00.112-0.11916.573-0.009-0.0090.0000.0000.0000.000
18A14LYS10.8681.06116.1900.2980.2980.0000.0000.0000.000
19A15GLU00.074-0.08212.5270.0960.0960.0000.0000.0000.000
20A15GLU-1-0.938-0.81110.439-1.145-1.1450.0000.0000.0000.000
21A16TYR00.038-0.11910.210-0.024-0.0240.0000.0000.0000.000
22A16TYR0-0.1520.06410.4140.0720.0720.0000.0000.0000.000
23A17CYS00.151-0.0976.1390.1050.1050.0000.0000.0000.000
24A17CYS0-0.1380.1154.465-0.316-0.3080.0040.060-0.0720.000
25A18ILE00.002-0.1134.684-0.0270.048-0.002-0.020-0.0540.000
26A18ILE0-0.0560.0924.6660.0530.084-0.001-0.005-0.0250.000
27A19ASN00.117-0.0712.518-0.8610.1912.095-1.621-1.526-0.015
28A19ASN0-0.0810.0644.066-0.683-0.3950.000-0.088-0.2010.000
29A20CYS00.028-0.1293.293-1.851-1.8230.0090.032-0.0690.000
30A20CYS0-0.0580.1164.733-0.166-0.0740.008-0.037-0.0640.000
31A21PRO00.034-0.0814.7872.7272.866-0.001-0.006-0.1310.000
32A22ASP00.1030.0026.3780.3770.3770.0000.0000.0000.000
33A22ASP-1-0.883-0.7895.3585.9185.9180.0000.0000.0000.000
34A23ASP00.068-0.1127.150-0.391-0.3910.0000.0000.0000.000
35A23ASP-1-0.987-0.83811.5311.2051.2050.0000.0000.0000.000
36A24GLU00.026-0.1689.242-0.441-0.4410.0000.0000.0000.000
37A24GLU-1-0.929-0.8118.4511.7571.7570.0000.0000.0000.000
38A25ARG00.099-0.0677.405-0.412-0.4120.0000.0000.0000.000
39A25ARG10.7060.9762.855-8.409-7.2460.204-0.645-0.7210.005
40A26ALA00.153-0.0928.133-0.372-0.3720.0000.0000.0000.000
41A26ALA0-0.0450.12112.347-0.016-0.0160.0000.0000.0000.000
42A27ASN00.029-0.08611.583-0.243-0.2430.0000.0000.0000.000
43A27ASN0-0.1010.08112.271-0.136-0.1360.0000.0000.0000.000
44A28LEU00.105-0.1039.147-0.254-0.2540.0000.0000.0000.000
45A28LEU0-0.0510.1297.408-0.013-0.0130.0000.0000.0000.000
46A29GLU00.094-0.17010.217-0.215-0.2150.0000.0000.0000.000
47A29GLU-1-0.921-0.7979.3920.4030.4030.0000.0000.0000.000
48A30SER0-0.030-0.08211.398-0.146-0.1460.0000.0000.0000.000
49A30SER0-0.0670.06414.650-0.028-0.0280.0000.0000.0000.000
50A31ALA00.104-0.09213.767-0.091-0.0910.0000.0000.0000.000
51A31ALA0-0.0810.10913.0540.0120.0120.0000.0000.0000.000
52A32ALA00.082-0.10612.575-0.039-0.0390.0000.0000.0000.000
53A32ALA0-0.0570.10611.719-0.019-0.0190.0000.0000.0000.000
54A33ARG00.064-0.09013.850-0.071-0.0710.0000.0000.0000.000
55A33ARG10.7590.99413.479-0.228-0.2280.0000.0000.0000.000
56A34TYR00.110-0.07516.667-0.038-0.0380.0000.0000.0000.000
57A34TYR0-0.1300.06917.9390.0020.0020.0000.0000.0000.000
58A35LEU00.067-0.10017.198-0.013-0.0130.0000.0000.0000.000
59A35LEU0-0.0820.09515.007-0.006-0.0060.0000.0000.0000.000
60A36ASP00.065-0.10617.631-0.010-0.0100.0000.0000.0000.000
61A36ASP-1-0.852-0.76617.404-0.173-0.1730.0000.0000.0000.000
62A37GLY00.016-0.09219.134-0.009-0.0090.0000.0000.0000.000
63A38LYS00.1120.00821.698-0.011-0.0110.0000.0000.0000.000
64A38LYS10.7701.02222.235-0.041-0.0410.0000.0000.0000.000
65A39MET00.084-0.10421.7910.0070.0070.0000.0000.0000.000
66A39MET0-0.0830.10318.108-0.018-0.0180.0000.0000.0000.000
67A40ARG00.042-0.11223.085-0.008-0.0080.0000.0000.0000.000
68A40ARG10.7210.96920.7940.1660.1660.0000.0000.0000.000
69A41GLU00.142-0.05725.004-0.009-0.0090.0000.0000.0000.000
70A41GLU-1-0.941-0.80526.5580.0260.0260.0000.0000.0000.000
71A42ILE00.083-0.09426.513-0.001-0.0010.0000.0000.0000.000
72A42ILE0-0.1070.10024.9720.0010.0010.0000.0000.0000.000
73A43ARG00.093-0.07026.8690.0040.0040.0000.0000.0000.000
74A43ARG10.7860.99523.9070.1450.1450.0000.0000.0000.000
75A44SER0-0.016-0.10928.354-0.003-0.0030.0000.0000.0000.000
76A44SER0-0.0730.05729.0490.0030.0030.0000.0000.0000.000
77A45SER0-0.003-0.10430.7940.0000.0000.0000.0000.0000.000
78A45SER0-0.0720.05531.0790.0030.0030.0000.0000.0000.000
79A46GLY0-0.002-0.09132.3820.0040.0040.0000.0000.0000.000
80A47LYS00.0490.00233.389-0.003-0.0030.0000.0000.0000.000
81A47LYS10.8591.05233.5960.0070.0070.0000.0000.0000.000
82A48VAL00.020-0.11930.1730.0060.0060.0000.0000.0000.000
83A48VAL0-0.0790.10928.4190.0010.0010.0000.0000.0000.000
84A49ILE00.077-0.11030.291-0.008-0.0080.0000.0000.0000.000
85A49ILE0-0.0390.12632.8420.0000.0000.0000.0000.0000.000
86A50GLY00.056-0.08329.0460.0060.0060.0000.0000.0000.000
87A51ALA00.1350.01425.1340.0140.0140.0000.0000.0000.000
88A51ALA0-0.0890.09024.166-0.005-0.0050.0000.0000.0000.000
89A52ASP00.018-0.11323.281-0.006-0.0060.0000.0000.0000.000
90A52ASP-1-0.882-0.83524.830-0.092-0.0920.0000.0000.0000.000
91A53ARG00.103-0.07824.0290.0110.0110.0000.0000.0000.000
92A53ARG10.8651.08728.2550.0300.0300.0000.0000.0000.000
93A54VAL00.078-0.11325.5340.0210.0210.0000.0000.0000.000
94A54VAL0-0.0700.10223.796-0.002-0.0020.0000.0000.0000.000
95A55ALA00.144-0.08721.1190.0220.0220.0000.0000.0000.000
96A55ALA0-0.0770.11120.102-0.006-0.0060.0000.0000.0000.000
97A56VAL00.065-0.11421.3960.0200.0200.0000.0000.0000.000
98A56VAL0-0.1040.10123.1750.0000.0000.0000.0000.0000.000
99A57MET00.099-0.10623.3570.0230.0230.0000.0000.0000.000
100A57MET0-0.1240.08926.3330.0010.0010.0000.0000.0000.000
101A58ALA00.112-0.08521.9330.0230.0230.0000.0000.0000.000
102A58ALA0-0.0590.09721.268-0.004-0.0040.0000.0000.0000.000
103A59ALA00.096-0.10019.6620.0290.0290.0000.0000.0000.000
104A59ALA0-0.0710.10619.538-0.002-0.0020.0000.0000.0000.000
105A60LEU00.082-0.09520.5490.0370.0370.0000.0000.0000.000
106A60LEU0-0.0910.11325.020-0.003-0.0030.0000.0000.0000.000
107A61ASN00.112-0.08423.8200.0200.0200.0000.0000.0000.000
108A61ASN0-0.1250.07023.766-0.017-0.0170.0000.0000.0000.000
109A62ILE00.076-0.08319.6070.0090.0090.0000.0000.0000.000
110A62ILE0-0.0620.11216.8100.0030.0030.0000.0000.0000.000
111A63THR00.052-0.09920.7760.0410.0410.0000.0000.0000.000
112A63THR0-0.0680.04820.7840.0050.0050.0000.0000.0000.000
113A64HIS00.092-0.07421.6010.0230.0230.0000.0000.0000.000
114A64HIS0-0.1020.08825.755-0.004-0.0040.0000.0000.0000.000
115A65ASP00.104-0.09023.1620.0040.0040.0000.0000.0000.000
116A65ASP-1-0.915-0.82522.4950.1560.1560.0000.0000.0000.000
117A66LEU00.027-0.12420.0900.0070.0070.0000.0000.0000.000
118A66LEU0-0.0690.11017.0850.0090.0090.0000.0000.0000.000
119A67LEU00.072-0.09921.3950.0330.0330.0000.0000.0000.000
120A67LEU0-0.0860.10423.417-0.003-0.0030.0000.0000.0000.000
121A68HIS00.177-0.06424.2580.0100.0100.0000.0000.0000.000
122A68HIS0-0.1240.08926.5850.0020.0020.0000.0000.0000.000
123A69ARG00.061-0.08623.075-0.008-0.0080.0000.0000.0000.000
124A69ARG10.7410.98221.739-0.225-0.2250.0000.0000.0000.000
125A70LYS00.094-0.07422.9320.0160.0160.0000.0000.0000.000
126A70LYS10.7360.97521.915-0.291-0.2910.0000.0000.0000.000
127A71GLU00.086-0.13223.7110.0140.0140.0000.0000.0000.000
128A71GLU-1-1.013-0.83927.8490.1600.1600.0000.0000.0000.000
129A72ARG00.111-0.07027.413-0.007-0.0070.0000.0000.0000.000
130A72ARG10.7630.96526.257-0.252-0.2520.0000.0000.0000.000
131A73LEU00.089-0.11524.381-0.015-0.0150.0000.0000.0000.000
132A73LEU0-0.1090.11321.7560.0070.0070.0000.0000.0000.000
133A74ASP00.132-0.10725.9080.0100.0100.0000.0000.0000.000
134A74ASP-1-0.926-0.78325.7830.2750.2750.0000.0000.0000.000
135A75GLN00.065-0.10527.837-0.005-0.0050.0000.0000.0000.000
136A75GLN0-0.0790.11130.905-0.003-0.0030.0000.0000.0000.000
137A76GLU00.103-0.08129.408-0.017-0.0170.0000.0000.0000.000
138A76GLU-1-0.877-0.75428.1500.2510.2510.0000.0000.0000.000
139A77SER00.055-0.07127.752-0.008-0.0080.0000.0000.0000.000
140A77SER0-0.0520.07126.8240.0000.0000.0000.0000.0000.000
141A78SER00.039-0.09928.915-0.001-0.0010.0000.0000.0000.000
142A78SER0-0.0180.08831.758-0.004-0.0040.0000.0000.0000.000
143A79SER00.004-0.10932.133-0.010-0.0100.0000.0000.0000.000
144A79SER0-0.0600.06333.340-0.006-0.0060.0000.0000.0000.000
145A80THR0-0.019-0.10331.441-0.016-0.0160.0000.0000.0000.000
146A80THR0-0.0700.06730.3460.0030.0030.0000.0000.0000.000
147A81ARG00.124-0.07532.242-0.004-0.0040.0000.0000.0000.000
148A81ARG10.7911.02531.715-0.191-0.1910.0000.0000.0000.000
149A82GLU00.014-0.11433.351-0.002-0.0020.0000.0000.0000.000
150A82GLU-1-0.845-0.75436.1620.1620.1620.0000.0000.0000.000
151A83ARG00.156-0.06136.459-0.011-0.0110.0000.0000.0000.000
152A83ARG10.7941.01236.055-0.148-0.1480.0000.0000.0000.000
153A84VAL00.048-0.12035.132-0.011-0.0110.0000.0000.0000.000
154A84VAL0-0.0870.11233.2530.0020.0020.0000.0000.0000.000
155A85ARG00.120-0.06936.562-0.005-0.0050.0000.0000.0000.000
156A85ARG10.7640.98637.391-0.147-0.1470.0000.0000.0000.000
157A86GLU00.113-0.09838.654-0.006-0.0060.0000.0000.0000.000
158A86GLU-1-0.876-0.75440.6950.1360.1360.0000.0000.0000.000
159A87LEU00.038-0.11740.166-0.010-0.0100.0000.0000.0000.000
160A87LEU0-0.0970.08338.2830.0000.0000.0000.0000.0000.000
161A88LEU00.071-0.10240.049-0.007-0.0070.0000.0000.0000.000
162A88LEU0-0.0740.09036.6810.0010.0010.0000.0000.0000.000
163A89ASP00.116-0.06441.208-0.004-0.0040.0000.0000.0000.000
164A89ASP-1-0.913-0.77843.4800.1130.1130.0000.0000.0000.000
165A90ARG00.091-0.09844.232-0.006-0.0060.0000.0000.0000.000
166A90ARG10.7690.97944.413-0.120-0.1200.0000.0000.0000.000
167A91VAL00.054-0.08743.989-0.007-0.0070.0000.0000.0000.000
168A91VAL0-0.1060.09242.4400.0010.0010.0000.0000.0000.000
169A92ASP00.095-0.08945.043-0.004-0.0040.0000.0000.0000.000
170A92ASP-1-0.993-0.85844.9380.1120.1120.0000.0000.0000.000
171A93ARG00.104-0.08046.525-0.004-0.0040.0000.0000.0000.000
172A93ARG10.7160.93747.457-0.104-0.1040.0000.0000.0000.000
173A94ALA00.106-0.06348.901-0.006-0.0060.0000.0000.0000.000
174A94ALA0-0.1020.07548.5230.0010.0010.0000.0000.0000.000
175A95LEU00.040-0.11148.584-0.005-0.0050.0000.0000.0000.000
176A95LEU0-0.1090.08745.4620.0010.0010.0000.0000.0000.000
177A96ALA00.076-0.10349.898-0.003-0.0030.0000.0000.0000.000
178A96ALA0-0.0800.10750.8520.0000.0000.0000.0000.0000.000
179A97ASN0-0.154-0.14052.125-0.005-0.0050.0000.0000.0000.000
180A97ASN0-0.029-0.02853.491-0.003-0.0030.0000.0000.0000.000