FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 171LZ

Calculation Name: 3HIN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3HIN

Chain ID: A

ChEMBL ID:

UniProt ID: Q6N8W7

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 258
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3035438.04444
FMO2-HF: Nuclear repulsion 2938724.27082
FMO2-HF: Total energy -96713.77362
FMO2-MP2: Total energy -96994.251778


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:9:ALA)


Summations of interaction energy for fragment #1(A:9:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-2.241-0.967-0.01-0.741-0.5240.001
Interaction energy analysis for fragmet #1(A:9:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.008 / q_NPA : -0.015
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A11THR00.0160.0163.911-2.022-0.748-0.010-0.741-0.5240.001
4A12ILE0-0.008-0.0076.713-0.094-0.0940.0000.0000.0000.000
5A13ALA00.0060.0189.4000.1570.1570.0000.0000.0000.000
6A14ASP-1-0.820-0.90012.826-0.086-0.0860.0000.0000.0000.000
7A15PRO00.0240.00915.7660.0390.0390.0000.0000.0000.000
8A16SER0-0.074-0.03618.6100.0160.0160.0000.0000.0000.000
9A17THR0-0.086-0.06618.1680.0240.0240.0000.0000.0000.000
10A18LEU0-0.027-0.02319.0090.0190.0190.0000.0000.0000.000
11A19VAL0-0.013-0.00922.463-0.012-0.0120.0000.0000.0000.000
12A20VAL0-0.009-0.00822.3030.0100.0100.0000.0000.0000.000
13A21ASP-1-0.859-0.91125.740-0.027-0.0270.0000.0000.0000.000
14A22THR0-0.069-0.04328.3200.0030.0030.0000.0000.0000.000
15A23VAL00.0320.02430.418-0.002-0.0020.0000.0000.0000.000
16A24GLY00.0060.00133.8490.0030.0030.0000.0000.0000.000
17A25PRO0-0.023-0.01032.658-0.003-0.0030.0000.0000.0000.000
18A26VAL00.0080.00630.6390.0030.0030.0000.0000.0000.000
19A27LEU00.0210.02423.241-0.003-0.0030.0000.0000.0000.000
20A28THR0-0.032-0.02227.6170.0090.0090.0000.0000.0000.000
21A29ILE00.027-0.00221.865-0.007-0.0070.0000.0000.0000.000
22A30GLY00.0330.01225.4450.0110.0110.0000.0000.0000.000
23A31LEU0-0.002-0.01422.343-0.004-0.0040.0000.0000.0000.000
24A32ASN0-0.001-0.00123.3600.0020.0020.0000.0000.0000.000
25A33ARG10.8040.86619.137-0.104-0.1040.0000.0000.0000.000
26A34PRO00.0710.04624.1880.0090.0090.0000.0000.0000.000
27A35LYS10.9250.95726.862-0.015-0.0150.0000.0000.0000.000
28A36LYS10.8160.91020.778-0.096-0.0960.0000.0000.0000.000
29A37ARG10.9210.97725.309-0.074-0.0740.0000.0000.0000.000
30A38ASN0-0.021-0.02323.9530.0040.0040.0000.0000.0000.000
31A39ALA0-0.0050.01521.7780.0120.0120.0000.0000.0000.000
32A40LEU0-0.0160.00118.088-0.007-0.0070.0000.0000.0000.000
33A41ASN00.030-0.01715.4920.0140.0140.0000.0000.0000.000
34A42ASP-1-0.738-0.86810.0020.6450.6450.0000.0000.0000.000
35A43GLY00.0750.04711.971-0.006-0.0060.0000.0000.0000.000
36A44LEU00.0180.02213.117-0.035-0.0350.0000.0000.0000.000
37A45MET0-0.026-0.01213.508-0.041-0.0410.0000.0000.0000.000
38A46ALA00.0000.00210.6150.0070.0070.0000.0000.0000.000
39A47ALA00.0240.01112.496-0.056-0.0560.0000.0000.0000.000
40A48LEU00.0170.00415.597-0.015-0.0150.0000.0000.0000.000
41A49LYS10.9260.9609.472-0.301-0.3010.0000.0000.0000.000
42A50ASP-1-0.899-0.94312.785-0.204-0.2040.0000.0000.0000.000
43A51CYS0-0.079-0.02815.311-0.011-0.0110.0000.0000.0000.000
44A52LEU0-0.023-0.02217.833-0.001-0.0010.0000.0000.0000.000
45A53THR0-0.089-0.06714.2900.0250.0250.0000.0000.0000.000
46A54ASP-1-0.926-0.94817.145-0.116-0.1160.0000.0000.0000.000
47A55ILE0-0.0170.00519.816-0.006-0.0060.0000.0000.0000.000
48A56PRO00.0570.02622.5350.0030.0030.0000.0000.0000.000
49A57ASP-1-0.870-0.94925.418-0.029-0.0290.0000.0000.0000.000
50A58GLN0-0.050-0.01928.4330.0060.0060.0000.0000.0000.000
51A59ILE0-0.057-0.00826.5310.0040.0040.0000.0000.0000.000
52A60ARG10.8700.89529.0470.0060.0060.0000.0000.0000.000
53A61ALA00.0040.00729.4270.0050.0050.0000.0000.0000.000
54A62VAL00.0310.02724.138-0.006-0.0060.0000.0000.0000.000
55A63VAL00.0120.02027.4970.0070.0070.0000.0000.0000.000
56A64ILE00.0250.01322.694-0.004-0.0040.0000.0000.0000.000
57A65HIS0-0.007-0.00726.7090.0010.0010.0000.0000.0000.000
58A66GLY00.0530.04527.3650.0020.0020.0000.0000.0000.000
59A67ILE0-0.011-0.00227.821-0.006-0.0060.0000.0000.0000.000
60A68GLY00.0150.00829.4750.0050.0050.0000.0000.0000.000
61A69ASP-1-0.895-0.95632.0660.0370.0370.0000.0000.0000.000
62A70HIS0-0.002-0.01229.5370.0070.0070.0000.0000.0000.000
63A71PHE00.0000.01925.827-0.003-0.0030.0000.0000.0000.000
64A72SER0-0.001-0.02723.2690.0070.0070.0000.0000.0000.000
65A73ALA0-0.038-0.02125.6990.0010.0010.0000.0000.0000.000
66A74GLY00.0080.01322.5010.0070.0070.0000.0000.0000.000
67A75LEU00.0040.01016.616-0.007-0.0070.0000.0000.0000.000
68A76ASP-1-0.716-0.83718.4450.1080.1080.0000.0000.0000.000
69A77LEU00.012-0.00519.3090.0170.0170.0000.0000.0000.000
70A78SER0-0.083-0.05221.499-0.008-0.0080.0000.0000.0000.000
71A79GLU-1-0.796-0.87816.2800.1150.1150.0000.0000.0000.000
72A80LEU0-0.039-0.00615.8180.0390.0390.0000.0000.0000.000
73A81ARG10.8850.93910.130-0.480-0.4800.0000.0000.0000.000
74A82GLU-1-0.964-0.97614.4480.2560.2560.0000.0000.0000.000
75A83ARG10.8880.9458.897-0.754-0.7540.0000.0000.0000.000
76A84ASP-1-0.761-0.87813.2710.4680.4680.0000.0000.0000.000
77A85ALA0-0.001-0.00414.2860.0650.0650.0000.0000.0000.000
78A86THR0-0.036-0.01411.3230.0230.0230.0000.0000.0000.000
79A87GLU-1-0.864-0.9369.2630.8620.8620.0000.0000.0000.000
80A88GLY0-0.006-0.00410.8200.1500.1500.0000.0000.0000.000
81A89LEU0-0.0120.00512.983-0.010-0.0100.0000.0000.0000.000
82A90VAL0-0.010-0.0166.6760.0480.0480.0000.0000.0000.000
83A91HIS0-0.078-0.0469.6850.1380.1380.0000.0000.0000.000
84A92SER0-0.004-0.01510.568-0.081-0.0810.0000.0000.0000.000
85A93GLN00.0220.00810.886-0.091-0.0910.0000.0000.0000.000
86A94THR0-0.024-0.0208.2090.1100.1100.0000.0000.0000.000
87A95TRP0-0.004-0.01610.067-0.229-0.2290.0000.0000.0000.000
88A96HIS0-0.038-0.01213.573-0.096-0.0960.0000.0000.0000.000
89A97ARG10.7900.87410.160-0.555-0.5550.0000.0000.0000.000
90A98VAL0-0.063-0.02112.442-0.088-0.0880.0000.0000.0000.000
91A99PHE00.0410.00714.355-0.054-0.0540.0000.0000.0000.000
92A100ASP-1-0.795-0.88215.8350.2530.2530.0000.0000.0000.000
93A101LYS10.8840.94614.438-0.061-0.0610.0000.0000.0000.000
94A102ILE00.0000.01018.033-0.024-0.0240.0000.0000.0000.000
95A103GLN00.0690.05221.0320.0020.0020.0000.0000.0000.000
96A104TYR0-0.043-0.01319.486-0.018-0.0180.0000.0000.0000.000
97A105CYS0-0.0460.01721.871-0.018-0.0180.0000.0000.0000.000
98A106ARG10.8640.91822.7490.0110.0110.0000.0000.0000.000
99A107VAL0-0.076-0.03925.179-0.004-0.0040.0000.0000.0000.000
100A108PRO0-0.004-0.01026.5410.0070.0070.0000.0000.0000.000
101A109VAL00.022-0.00123.850-0.006-0.0060.0000.0000.0000.000
102A110ILE0-0.037-0.01927.3050.0050.0050.0000.0000.0000.000
103A111ALA00.0080.00827.456-0.001-0.0010.0000.0000.0000.000
104A112ALA0-0.017-0.01029.212-0.002-0.0020.0000.0000.0000.000
105A113LEU0-0.053-0.04529.3090.0040.0040.0000.0000.0000.000
106A114LYS10.9170.95432.149-0.045-0.0450.0000.0000.0000.000
107A115GLY00.0100.01232.3220.0050.0050.0000.0000.0000.000
108A116ALA00.008-0.01029.7350.0030.0030.0000.0000.0000.000
109A117VAL00.0110.00728.4850.0020.0020.0000.0000.0000.000
110A118ILE0-0.024-0.01227.1470.0000.0000.0000.0000.0000.000
111A119GLY00.0620.03524.7810.0070.0070.0000.0000.0000.000
112A120GLY00.0240.00221.180-0.001-0.0010.0000.0000.0000.000
113A121GLY00.0000.00822.0490.0000.0000.0000.0000.0000.000
114A122LEU00.016-0.00124.419-0.010-0.0100.0000.0000.0000.000
115A123GLU-1-0.784-0.88521.2610.2580.2580.0000.0000.0000.000
116A124LEU00.000-0.00520.792-0.002-0.0020.0000.0000.0000.000
117A125ALA00.0000.00022.746-0.011-0.0110.0000.0000.0000.000
118A126CYS0-0.091-0.05025.170-0.012-0.0120.0000.0000.0000.000
119A127ALA0-0.018-0.00221.794-0.003-0.0030.0000.0000.0000.000
120A128ALA0-0.0220.00423.789-0.008-0.0080.0000.0000.0000.000
121A129HIS00.0330.02525.475-0.004-0.0040.0000.0000.0000.000
122A130ILE0-0.037-0.01328.983-0.003-0.0030.0000.0000.0000.000
123A131ARG10.8640.93328.465-0.089-0.0890.0000.0000.0000.000
124A132VAL00.013-0.00732.292-0.004-0.0040.0000.0000.0000.000
125A133ALA0-0.0100.00934.2740.0020.0020.0000.0000.0000.000
126A134GLU-1-0.787-0.88736.2790.0350.0350.0000.0000.0000.000
127A135ALA00.0220.00838.3210.0040.0040.0000.0000.0000.000
128A136SER0-0.0040.00337.2360.0030.0030.0000.0000.0000.000
129A137ALA0-0.043-0.01334.1920.0030.0030.0000.0000.0000.000
130A138TYR0-0.004-0.01232.6920.0000.0000.0000.0000.0000.000
131A139TYR00.0130.00531.6030.0060.0060.0000.0000.0000.000
132A140ALA00.030-0.00630.731-0.004-0.0040.0000.0000.0000.000
133A141LEU00.0200.01426.4880.0090.0090.0000.0000.0000.000
134A142PRO00.0220.01427.202-0.001-0.0010.0000.0000.0000.000
135A143GLU-1-0.815-0.93024.1770.1780.1780.0000.0000.0000.000
136A144GLY00.0790.04926.3460.0040.0040.0000.0000.0000.000
137A145SER0-0.044-0.01228.776-0.004-0.0040.0000.0000.0000.000
138A146ARG10.8670.91824.963-0.154-0.1540.0000.0000.0000.000
139A147GLY00.0060.02026.0480.0080.0080.0000.0000.0000.000
140A148ILE0-0.060-0.02121.4610.0130.0130.0000.0000.0000.000
141A149PHE00.014-0.00523.153-0.018-0.0180.0000.0000.0000.000
142A150VAL00.0100.00822.4000.0120.0120.0000.0000.0000.000
143A151GLY00.0350.00718.4030.0070.0070.0000.0000.0000.000
144A152GLY00.0290.01617.3840.0660.0660.0000.0000.0000.000
145A153GLY0-0.007-0.01119.124-0.022-0.0220.0000.0000.0000.000
146A154GLY00.0550.01821.033-0.026-0.0260.0000.0000.0000.000
147A155SER0-0.047-0.03124.008-0.014-0.0140.0000.0000.0000.000
148A156VAL0-0.0040.00122.634-0.013-0.0130.0000.0000.0000.000
149A157ARG10.8970.94019.279-0.228-0.2280.0000.0000.0000.000
150A158LEU00.0790.03726.448-0.012-0.0120.0000.0000.0000.000
151A159PRO0-0.042-0.01228.429-0.012-0.0120.0000.0000.0000.000
152A160ARG10.7380.82127.616-0.132-0.1320.0000.0000.0000.000
153A161LEU0-0.043-0.00329.478-0.007-0.0070.0000.0000.0000.000
154A162ILE0-0.0060.00232.845-0.006-0.0060.0000.0000.0000.000
155A163GLY00.0280.02334.208-0.004-0.0040.0000.0000.0000.000
156A164VAL00.006-0.03132.4650.0030.0030.0000.0000.0000.000
157A165ALA0-0.0120.00834.3900.0030.0030.0000.0000.0000.000
158A166ARG10.9930.98736.586-0.069-0.0690.0000.0000.0000.000
159A167MET00.0070.02127.0830.0010.0010.0000.0000.0000.000
160A168ALA00.011-0.00532.7870.0050.0050.0000.0000.0000.000
161A169ASP-1-0.833-0.90634.1410.0820.0820.0000.0000.0000.000
162A170MET0-0.032-0.00331.9520.0000.0000.0000.0000.0000.000
163A171MET0-0.060-0.01626.5450.0030.0030.0000.0000.0000.000
164A172LEU0-0.033-0.01631.6940.0020.0020.0000.0000.0000.000
165A173THR0-0.053-0.02634.396-0.003-0.0030.0000.0000.0000.000
166A174GLY0-0.0100.00833.281-0.003-0.0030.0000.0000.0000.000
167A175ARG10.8330.91834.321-0.075-0.0750.0000.0000.0000.000
168A176VAL0-0.026-0.01934.6650.0050.0050.0000.0000.0000.000
169A177TYR0-0.031-0.00135.700-0.005-0.0050.0000.0000.0000.000
170A178SER00.007-0.03936.6940.0020.0020.0000.0000.0000.000
171A179ALA00.0460.02337.8000.0020.0020.0000.0000.0000.000
172A180ALA00.0030.00138.7320.0000.0000.0000.0000.0000.000
173A181GLU-1-0.798-0.88340.4510.0600.0600.0000.0000.0000.000
174A182GLY0-0.009-0.01337.4740.0020.0020.0000.0000.0000.000
175A183VAL0-0.030-0.00337.9750.0020.0020.0000.0000.0000.000
176A184VAL0-0.020-0.00239.531-0.001-0.0010.0000.0000.0000.000
177A185HIS0-0.065-0.04238.1850.0010.0010.0000.0000.0000.000
178A186GLY00.0610.03636.5310.0030.0030.0000.0000.0000.000
179A187PHE0-0.071-0.03232.5050.0040.0040.0000.0000.0000.000
180A188SER0-0.048-0.03332.9580.0040.0040.0000.0000.0000.000
181A189GLN0-0.002-0.00132.671-0.001-0.0010.0000.0000.0000.000
182A190TYR00.0180.00036.580-0.005-0.0050.0000.0000.0000.000
183A191LEU0-0.0090.00738.0010.0040.0040.0000.0000.0000.000
184A192ILE0-0.035-0.02239.861-0.003-0.0030.0000.0000.0000.000
185A193GLU-1-0.893-0.95641.5990.0350.0350.0000.0000.0000.000
186A194ASN0-0.054-0.03444.2870.0000.0000.0000.0000.0000.000
187A195GLY00.0160.01343.130-0.001-0.0010.0000.0000.0000.000
188A196SER0-0.022-0.05138.5920.0040.0040.0000.0000.0000.000
189A197ALA00.0300.00035.170-0.001-0.0010.0000.0000.0000.000
190A198TYR0-0.020-0.00831.7360.0000.0000.0000.0000.0000.000
191A199ASP-1-0.801-0.86135.1460.0160.0160.0000.0000.0000.000
192A200LYS10.8220.90638.213-0.027-0.0270.0000.0000.0000.000
193A201ALA0-0.018-0.01932.812-0.001-0.0010.0000.0000.0000.000
194A202LEU00.0460.02133.891-0.001-0.0010.0000.0000.0000.000
195A203GLU-1-0.855-0.90935.5080.0190.0190.0000.0000.0000.000
196A204LEU0-0.020-0.01335.493-0.001-0.0010.0000.0000.0000.000
197A205GLY00.0230.00933.5300.0000.0000.0000.0000.0000.000
198A206ASN0-0.021-0.03634.154-0.005-0.0050.0000.0000.0000.000
199A207ARG10.8860.94737.048-0.020-0.0200.0000.0000.0000.000
200A208VAL0-0.010-0.00332.577-0.002-0.0020.0000.0000.0000.000
201A209ALA00.0140.02734.310-0.001-0.0010.0000.0000.0000.000
202A210GLN0-0.0070.00235.282-0.002-0.0020.0000.0000.0000.000
203A211ASN0-0.045-0.01234.928-0.003-0.0030.0000.0000.0000.000
204A212ALA00.0590.04036.049-0.002-0.0020.0000.0000.0000.000
205A213PRO00.0620.01331.7250.0040.0040.0000.0000.0000.000
206A214LEU00.0530.03332.1230.0040.0040.0000.0000.0000.000
207A215THR0-0.032-0.00834.1430.0020.0020.0000.0000.0000.000
208A216ASN00.0410.01230.3800.0060.0060.0000.0000.0000.000
209A217PHE00.0240.01627.0940.0060.0060.0000.0000.0000.000
210A218ALA00.0440.00730.3340.0060.0060.0000.0000.0000.000
211A219VAL0-0.031-0.01232.7220.0040.0040.0000.0000.0000.000
212A220LEU0-0.034-0.02327.5110.0040.0040.0000.0000.0000.000
213A221GLN0-0.0010.00224.6280.0160.0160.0000.0000.0000.000
214A222ALA00.0090.00328.0720.0050.0050.0000.0000.0000.000
215A223LEU00.0010.00231.0650.0030.0030.0000.0000.0000.000
216A224PRO00.0020.00028.5880.0010.0010.0000.0000.0000.000
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