FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 1772Z

Calculation Name: 4AEZ-C-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4AEZ

Chain ID: C

ChEMBL ID:

UniProt ID: O14417

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 215
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2511795.024461
FMO2-HF: Nuclear repulsion 2422885.219217
FMO2-HF: Total energy -88909.805244
FMO2-MP2: Total energy -89171.796843


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:9:ASN)


Summations of interaction energy for fragment #1(C:9:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.4571.074-0.017-0.731-0.7830.001
Interaction energy analysis for fragmet #1(C:9:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.015 / q_NPA : -0.021
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3C11VAL0-0.028-0.0143.8770.0721.603-0.017-0.731-0.7830.001
4C12HIS0-0.010-0.0126.426-0.085-0.0850.0000.0000.0000.000
5C13MET00.0330.0169.1350.0230.0230.0000.0000.0000.000
6C14ASP-1-0.822-0.91112.653-0.164-0.1640.0000.0000.0000.000
7C15VAL0-0.020-0.0109.3630.0470.0470.0000.0000.0000.000
8C16ILE0-0.011-0.01011.0290.0360.0360.0000.0000.0000.000
9C17GLU-1-0.842-0.92013.903-0.140-0.1400.0000.0000.0000.000
10C18GLN0-0.045-0.01914.3880.0180.0180.0000.0000.0000.000
11C19SER00.002-0.01515.4760.0380.0380.0000.0000.0000.000
12C20LYS10.8210.90918.1030.1580.1580.0000.0000.0000.000
13C21GLU-1-0.884-0.94919.513-0.083-0.0830.0000.0000.0000.000
14C22ASN0-0.125-0.05920.1170.0250.0250.0000.0000.0000.000
15C23ILE0-0.040-0.01416.9520.0140.0140.0000.0000.0000.000
16C24GLU-1-0.738-0.85120.742-0.003-0.0030.0000.0000.0000.000
17C25PRO00.002-0.00922.058-0.016-0.0160.0000.0000.0000.000
18C26ARG10.7590.87418.780-0.010-0.0100.0000.0000.0000.000
19C27LYS10.8870.90921.9880.0450.0450.0000.0000.0000.000
20C28ALA0-0.038-0.01319.475-0.021-0.0210.0000.0000.0000.000
21C29GLY0-0.0130.00917.471-0.021-0.0210.0000.0000.0000.000
22C30HIS0-0.011-0.02415.1760.0750.0750.0000.0000.0000.000
23C31SER0-0.0180.00010.065-0.117-0.1170.0000.0000.0000.000
24C32ALA00.0680.0288.4250.0810.0810.0000.0000.0000.000
25C33SER00.0260.0066.352-0.189-0.1890.0000.0000.0000.000
26C34ALA00.0000.0177.8710.0770.0770.0000.0000.0000.000
27C35LEU00.0500.03311.563-0.012-0.0120.0000.0000.0000.000
28C36ALA00.0170.0238.1960.0000.0000.0000.0000.0000.000
29C37LYS10.7940.89210.081-0.510-0.5100.0000.0000.0000.000
30C38SER0-0.022-0.03412.084-0.009-0.0090.0000.0000.0000.000
31C39SER0-0.0030.00412.466-0.026-0.0260.0000.0000.0000.000
32C40SER0-0.085-0.04011.7920.0210.0210.0000.0000.0000.000
33C41ARG10.7490.88014.116-0.233-0.2330.0000.0000.0000.000
34C42ASN00.0150.00717.373-0.030-0.0300.0000.0000.0000.000
35C43HIS00.005-0.00519.834-0.006-0.0060.0000.0000.0000.000
36C44THR0-0.002-0.00321.814-0.005-0.0050.0000.0000.0000.000
37C45GLU-1-0.875-0.94923.9750.1540.1540.0000.0000.0000.000
38C46LYS10.9440.97320.371-0.294-0.2940.0000.0000.0000.000
39C47GLU-1-0.797-0.87517.6160.2870.2870.0000.0000.0000.000
40C48VAL00.0360.01721.1270.0190.0190.0000.0000.0000.000
41C49ALA0-0.017-0.01223.9450.0050.0050.0000.0000.0000.000
42C50GLY0-0.009-0.00720.4710.0080.0080.0000.0000.0000.000
43C51LEU00.0090.00618.2670.0230.0230.0000.0000.0000.000
44C52GLN00.0420.01921.1210.0000.0000.0000.0000.0000.000
45C53LYS10.9300.95522.611-0.252-0.2520.0000.0000.0000.000
46C54GLU-1-0.833-0.89416.7990.5330.5330.0000.0000.0000.000
47C55ARG10.8470.92520.666-0.184-0.1840.0000.0000.0000.000
48C56MET0-0.008-0.00723.433-0.011-0.0110.0000.0000.0000.000
49C57GLY0-0.026-0.00522.218-0.013-0.0130.0000.0000.0000.000
50C58HIS00.0090.01618.3960.0020.0020.0000.0000.0000.000
51C59GLU-1-0.735-0.80823.5130.1490.1490.0000.0000.0000.000
52C60ARG10.9610.98225.149-0.270-0.2700.0000.0000.0000.000
53C61LYS10.8390.92119.766-0.382-0.3820.0000.0000.0000.000
54C62ILE00.0250.01025.933-0.013-0.0130.0000.0000.0000.000
55C63GLU-1-0.931-0.96728.5030.1660.1660.0000.0000.0000.000
56C64THR0-0.019-0.01428.310-0.004-0.0040.0000.0000.0000.000
57C65SER0-0.041-0.01728.049-0.007-0.0070.0000.0000.0000.000
58C66GLU-1-0.933-0.97429.2220.0970.0970.0000.0000.0000.000
59C67SER0-0.092-0.04830.228-0.010-0.0100.0000.0000.0000.000
60C68LEU0-0.057-0.02125.4940.0070.0070.0000.0000.0000.000
61C69ASP-1-0.890-0.94427.9960.1000.1000.0000.0000.0000.000
62C70ASP-1-0.777-0.85224.4930.0870.0870.0000.0000.0000.000
63C71PRO00.0290.02325.9200.0170.0170.0000.0000.0000.000
64C72LEU0-0.039-0.02725.4420.0100.0100.0000.0000.0000.000
65C73GLN0-0.033-0.02919.001-0.035-0.0350.0000.0000.0000.000
66C74VAL00.0320.01921.7780.0270.0270.0000.0000.0000.000
67C75TRP0-0.011-0.02222.9680.0210.0210.0000.0000.0000.000
68C76ILE0-0.023-0.01019.321-0.001-0.0010.0000.0000.0000.000
69C77ASP-1-0.881-0.92418.1930.3420.3420.0000.0000.0000.000
70C78TYR0-0.064-0.04518.5560.0400.0400.0000.0000.0000.000
71C79ILE00.0300.00821.212-0.003-0.0030.0000.0000.0000.000
72C80LYS10.8540.90412.273-0.390-0.3900.0000.0000.0000.000
73C81TRP0-0.021-0.03016.577-0.017-0.0170.0000.0000.0000.000
74C82THR0-0.005-0.01217.7040.0050.0050.0000.0000.0000.000
75C83LEU0-0.018-0.01218.768-0.015-0.0150.0000.0000.0000.000
76C84ASP-1-0.821-0.89514.0240.3480.3480.0000.0000.0000.000
77C85ASN0-0.018-0.01415.6840.0110.0110.0000.0000.0000.000
78C86PHE00.0440.02917.249-0.007-0.0070.0000.0000.0000.000
79C87PRO00.0270.03717.346-0.018-0.0180.0000.0000.0000.000
80C88GLN00.0940.03619.347-0.016-0.0160.0000.0000.0000.000
81C89GLY00.0130.02222.652-0.009-0.0090.0000.0000.0000.000
82C90GLU-1-0.869-0.91224.4590.0920.0920.0000.0000.0000.000
83C91THR00.0180.00126.009-0.001-0.0010.0000.0000.0000.000
84C92LYS10.9460.96728.414-0.066-0.0660.0000.0000.0000.000
85C93THR00.0120.00325.9850.0020.0020.0000.0000.0000.000
86C94SER0-0.019-0.00723.8660.0190.0190.0000.0000.0000.000
87C95GLY00.0430.02025.1740.0140.0140.0000.0000.0000.000
88C96LEU00.0350.01923.4960.0050.0050.0000.0000.0000.000
89C97VAL00.0350.00726.545-0.001-0.0010.0000.0000.0000.000
90C98THR00.0090.00830.043-0.002-0.0020.0000.0000.0000.000
91C99LEU0-0.046-0.01423.994-0.001-0.0010.0000.0000.0000.000
92C100LEU0-0.003-0.00625.6730.0000.0000.0000.0000.0000.000
93C101GLU-1-0.766-0.82628.8390.0450.0450.0000.0000.0000.000
94C102ARG10.7650.85529.403-0.134-0.1340.0000.0000.0000.000
95C103CYS0-0.0010.02327.975-0.004-0.0040.0000.0000.0000.000
96C104THR0-0.001-0.02330.032-0.006-0.0060.0000.0000.0000.000
97C105ARG10.8310.89832.403-0.064-0.0640.0000.0000.0000.000
98C106GLU-1-0.881-0.93031.4070.0980.0980.0000.0000.0000.000
99C107PHE00.022-0.00428.890-0.004-0.0040.0000.0000.0000.000
100C108VAL00.0120.03034.384-0.006-0.0060.0000.0000.0000.000
101C109ARG10.9460.95237.222-0.051-0.0510.0000.0000.0000.000
102C110ASN00.0110.02233.314-0.006-0.0060.0000.0000.0000.000
103C111PRO00.015-0.01236.014-0.004-0.0040.0000.0000.0000.000
104C112LEU0-0.0150.00830.431-0.007-0.0070.0000.0000.0000.000
105C113TYR0-0.020-0.04527.891-0.002-0.0020.0000.0000.0000.000
106C114LYS10.8270.93531.982-0.022-0.0220.0000.0000.0000.000
107C115ASP-1-0.800-0.91332.776-0.020-0.0200.0000.0000.0000.000
108C116ASP-1-0.788-0.86526.5180.0170.0170.0000.0000.0000.000
109C117VAL0-0.017-0.02724.7060.0010.0010.0000.0000.0000.000
110C118ARG10.7170.81422.383-0.080-0.0800.0000.0000.0000.000
111C119TYR00.0260.00625.0710.0030.0030.0000.0000.0000.000
112C120LEU00.0010.00428.3470.0000.0000.0000.0000.0000.000
113C121ARG10.9120.95421.3290.0570.0570.0000.0000.0000.000
114C122ILE00.0620.03124.263-0.001-0.0010.0000.0000.0000.000
115C123TRP00.0550.01127.1540.0010.0010.0000.0000.0000.000
116C124MET0-0.092-0.04028.466-0.004-0.0040.0000.0000.0000.000
117C125GLN0-0.036-0.01223.184-0.013-0.0130.0000.0000.0000.000
118C126TYR0-0.001-0.02527.813-0.002-0.0020.0000.0000.0000.000
119C127VAL00.0150.00030.9090.0000.0000.0000.0000.0000.000
120C128ASN0-0.123-0.06628.904-0.013-0.0130.0000.0000.0000.000
121C129TYR0-0.077-0.04126.7180.0000.0000.0000.0000.0000.000
122C130ILE0-0.0080.00233.4460.0060.0060.0000.0000.0000.000
123C131ASP-1-0.890-0.93637.0260.0010.0010.0000.0000.0000.000
124C132GLU-1-0.967-0.98540.209-0.006-0.0060.0000.0000.0000.000
125C133PRO0-0.019-0.01737.3150.0010.0010.0000.0000.0000.000
126C134VAL0-0.012-0.00439.0950.0000.0000.0000.0000.0000.000
127C135GLU-1-0.833-0.90541.998-0.003-0.0030.0000.0000.0000.000
128C136LEU0-0.0210.00634.8930.0020.0020.0000.0000.0000.000
129C137PHE00.013-0.01934.7980.0010.0010.0000.0000.0000.000
130C138SER00.006-0.01239.087-0.002-0.0020.0000.0000.0000.000
131C139PHE00.0060.00838.4600.0010.0010.0000.0000.0000.000
132C140LEU00.002-0.00634.7570.0020.0020.0000.0000.0000.000
133C141ALA0-0.028-0.01038.6790.0000.0000.0000.0000.0000.000
134C142HIS0-0.0140.00241.307-0.002-0.0020.0000.0000.0000.000
135C143HIS0-0.066-0.03839.8400.0040.0040.0000.0000.0000.000
136C144HIS0-0.046-0.02040.0900.0010.0010.0000.0000.0000.000
137C145ILE0-0.0060.01134.1400.0010.0010.0000.0000.0000.000
138C146GLY00.010-0.00133.571-0.004-0.0040.0000.0000.0000.000
139C147GLN0-0.0010.00634.332-0.010-0.0100.0000.0000.0000.000
140C148GLU-1-0.734-0.82035.230-0.043-0.0430.0000.0000.0000.000
141C149SER0-0.0010.00130.489-0.009-0.0090.0000.0000.0000.000
142C150SER0-0.050-0.07031.1900.0020.0020.0000.0000.0000.000
143C151ILE00.011-0.00726.7760.0000.0000.0000.0000.0000.000
144C152PHE00.0420.04631.2020.0010.0010.0000.0000.0000.000
145C153TYR0-0.011-0.03634.1430.0030.0030.0000.0000.0000.000
146C154GLU-1-0.779-0.84130.848-0.102-0.1020.0000.0000.0000.000
147C155GLU-1-0.783-0.87229.640-0.070-0.0700.0000.0000.0000.000
148C156TYR00.0030.01133.9520.0030.0030.0000.0000.0000.000
149C157ALA0-0.017-0.01537.5150.0020.0020.0000.0000.0000.000
150C158ASN0-0.036-0.03132.498-0.002-0.0020.0000.0000.0000.000
151C159TYR00.0430.04036.6290.0010.0010.0000.0000.0000.000
152C160PHE00.0170.00438.4600.0020.0020.0000.0000.0000.000
153C161GLU-1-0.786-0.85539.199-0.071-0.0710.0000.0000.0000.000
154C162SER0-0.069-0.03937.9830.0010.0010.0000.0000.0000.000
155C163ARG10.9090.94840.0270.0270.0270.0000.0000.0000.000
156C164GLY00.0400.02443.2560.0020.0020.0000.0000.0000.000
157C165LEU0-0.044-0.01944.6580.0010.0010.0000.0000.0000.000
158C166PHE00.0750.02242.5420.0010.0010.0000.0000.0000.000
159C167GLN00.0470.03645.250-0.001-0.0010.0000.0000.0000.000
160C168LYS10.8450.91345.4030.0270.0270.0000.0000.0000.000
161C169ALA00.0370.02141.2100.0000.0000.0000.0000.0000.000
162C170ASP-1-0.760-0.86642.195-0.050-0.0500.0000.0000.0000.000
163C171GLU-1-0.862-0.91544.308-0.029-0.0290.0000.0000.0000.000
164C172VAL0-0.0290.00639.4290.0010.0010.0000.0000.0000.000
165C173TYR00.0510.01436.521-0.003-0.0030.0000.0000.0000.000
166C174GLN00.0290.00441.213-0.001-0.0010.0000.0000.0000.000
167C175LYS10.8300.93141.3720.0260.0260.0000.0000.0000.000
168C176GLY00.0560.01939.2700.0010.0010.0000.0000.0000.000
169C177LYS10.8590.92039.8690.0490.0490.0000.0000.0000.000
170C178ARG10.8490.91241.7820.0320.0320.0000.0000.0000.000
171C179MET0-0.047-0.01239.9320.0020.0020.0000.0000.0000.000
172C180LYS10.8990.96438.6350.0610.0610.0000.0000.0000.000
173C181ALA00.0190.01935.606-0.003-0.0030.0000.0000.0000.000
174C182LYS10.7780.86732.2220.0370.0370.0000.0000.0000.000
175C183PRO00.013-0.00427.9560.0040.0040.0000.0000.0000.000
176C184PHE00.0710.01231.189-0.005-0.0050.0000.0000.0000.000
177C185LEU00.0460.02929.5180.0020.0020.0000.0000.0000.000
178C186ARG10.8120.87725.8790.1170.1170.0000.0000.0000.000
179C187PHE00.0190.02031.4580.0010.0010.0000.0000.0000.000
180C188GLN0-0.009-0.00234.5920.0000.0000.0000.0000.0000.000
181C189GLN00.0230.01832.2910.0010.0010.0000.0000.0000.000
182C190LYS10.8770.94130.3500.1250.1250.0000.0000.0000.000
183C191TYR0-0.002-0.00635.0080.0030.0030.0000.0000.0000.000
184C192GLN0-0.015-0.00337.826-0.001-0.0010.0000.0000.0000.000
185C193GLN00.004-0.00332.1170.0030.0030.0000.0000.0000.000
186C194PHE0-0.025-0.00437.5780.0010.0010.0000.0000.0000.000
187C195THR0-0.010-0.02639.5690.0040.0040.0000.0000.0000.000
188C196HIS0-0.096-0.04640.1440.0040.0040.0000.0000.0000.000
189C197ARG10.8740.89335.8950.0880.0880.0000.0000.0000.000
190C198TRP0-0.069-0.03641.7850.0030.0030.0000.0000.0000.000
191C199LEU0-0.033-0.02144.8880.0040.0040.0000.0000.0000.000
192C200GLU-1-0.881-0.93241.166-0.088-0.0880.0000.0000.0000.000
193C201PHE0-0.039-0.02940.3540.0020.0020.0000.0000.0000.000
194C202ALA0-0.042-0.00746.0640.0040.0040.0000.0000.0000.000
195C203PRO00.0780.05948.6940.0020.0020.0000.0000.0000.000
196C204GLN0-0.005-0.00450.6180.0000.0000.0000.0000.0000.000
197C205SER0-0.071-0.05050.0090.0030.0030.0000.0000.0000.000
198C206PHE0-0.023-0.01446.5220.0000.0000.0000.0000.0000.000
199C207SER0-0.012-0.01950.9970.0000.0000.0000.0000.0000.000
200C208SER0-0.031-0.00249.8610.0010.0010.0000.0000.0000.000
201C209ASN0-0.018-0.03151.900-0.001-0.0010.0000.0000.0000.000
202C210THR00.0630.03151.738-0.002-0.0020.0000.0000.0000.000
203C211ASN0-0.061-0.02953.2150.0000.0000.0000.0000.0000.000
204C212SER00.0080.02355.951-0.001-0.0010.0000.0000.0000.000
205C213VAL00.011-0.00656.8910.0020.0020.0000.0000.0000.000
206C214ASN00.0050.00559.6170.0020.0020.0000.0000.0000.000
207C215PRO0-0.016-0.02362.2080.0000.0000.0000.0000.0000.000
208C216LEU0-0.019-0.01464.9590.0010.0010.0000.0000.0000.000
209C217GLN00.0170.03463.7690.0020.0020.0000.0000.0000.000
210C218THR00.011-0.00768.724-0.001-0.0010.0000.0000.0000.000
211C219THR0-0.041-0.01466.9960.0010.0010.0000.0000.0000.000
212C220PHE0-0.017-0.01570.0090.0000.0000.0000.0000.0000.000
213C221GLU-1-0.887-0.93973.464-0.027-0.0270.0000.0000.0000.000
214C222SER0-0.054-0.02677.2370.0000.0000.0000.0000.0000.000
215C223THR0-0.0190.00480.2260.0010.0010.0000.0000.0000.000