FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

tag_button

FMODB ID: 177RZ

Calculation Name: 5HXN-A-Xray372

Preferred Name:
Warning: Undefined array key "pref_name" in /home/FMODBwui_src/fmodbwui/detail.php on line 446

Target Type:
Warning: Undefined array key "target_type" in /home/FMODBwui_src/fmodbwui/detail.php on line 447

Ligand Name:
Warning: Undefined variable $Ligand in /home/FMODBwui_src/fmodbwui/detail.php on line 448

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 448

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 448

ligand 3-letter code:
Warning: Undefined variable $Ligand in /home/FMODBwui_src/fmodbwui/detail.php on line 449

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 449

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 449

PDB ID: 5HXN

Chain ID: A

ChEMBL ID:
Warning: Undefined array key "chembl_id" in /home/FMODBwui_src/fmodbwui/detail.php on line 452

Warning: Undefined array key "chembl_id" in /home/FMODBwui_src/fmodbwui/detail.php on line 452

UniProt ID: B8XA40

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 220
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2738285.479832
FMO2-HF: Nuclear repulsion 2649395.879444
FMO2-HF: Total energy -88889.600388
FMO2-MP2: Total energy -89146.897899


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:76:LEU)


Summations of interaction energy for fragment #1(A:76:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-4.439-0.7141.467-1.84-3.3530
Interaction energy analysis for fragmet #1(A:76:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.014 / q_NPA : -0.024
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A78PRO0-0.0020.0123.438-1.2450.4250.018-0.648-1.0410.000
4A79LYS10.9470.9806.0711.6891.6890.0000.0000.0000.000
5A80HIS0-0.0180.0097.2560.4140.4140.0000.0000.0000.000
6A81ILE00.0260.02110.126-0.141-0.1410.0000.0000.0000.000
7A82ALA00.0000.00112.5940.1310.1310.0000.0000.0000.000
8A83LEU00.0450.00515.714-0.012-0.0120.0000.0000.0000.000
9A84ILE0-0.055-0.02618.1460.0390.0390.0000.0000.0000.000
10A85MET0-0.0010.02021.1780.0060.0060.0000.0000.0000.000
11A86ASP-1-0.855-0.91423.049-0.144-0.1440.0000.0000.0000.000
12A87GLY00.023-0.00524.8170.0020.0020.0000.0000.0000.000
13A88ASN00.0940.04227.4050.0150.0150.0000.0000.0000.000
14A89ARG10.8040.84729.5190.1160.1160.0000.0000.0000.000
15A90ARG10.8780.94230.6120.0800.0800.0000.0000.0000.000
16A91TRP00.0830.05728.9790.0080.0080.0000.0000.0000.000
17A92ALA00.0190.00931.6100.0070.0070.0000.0000.0000.000
18A93LYS10.8730.93035.0030.0820.0820.0000.0000.0000.000
19A94ASP-1-0.879-0.94732.599-0.066-0.0660.0000.0000.0000.000
20A95LYS10.8600.94731.5750.0630.0630.0000.0000.0000.000
21A96GLY0-0.0210.00437.4610.0040.0040.0000.0000.0000.000
22A97LEU0-0.0080.00236.4470.0020.0020.0000.0000.0000.000
23A98ASP-1-0.839-0.91839.029-0.067-0.0670.0000.0000.0000.000
24A99VAL0-0.050-0.04535.223-0.002-0.0020.0000.0000.0000.000
25A100SER0-0.037-0.02835.433-0.006-0.0060.0000.0000.0000.000
26A101GLU-1-0.899-0.95235.796-0.061-0.0610.0000.0000.0000.000
27A102GLY0-0.024-0.00632.341-0.001-0.0010.0000.0000.0000.000
28A103HIS0-0.080-0.08031.156-0.011-0.0110.0000.0000.0000.000
29A104LYS11.0040.99931.3960.0580.0580.0000.0000.0000.000
30A105HIS00.0100.02028.198-0.001-0.0010.0000.0000.0000.000
31A106LEU0-0.069-0.02325.670-0.008-0.0080.0000.0000.0000.000
32A107PHE00.0560.01425.699-0.017-0.0170.0000.0000.0000.000
33A108PRO00.0340.02225.308-0.009-0.0090.0000.0000.0000.000
34A109LYS10.8270.92622.0310.1080.1080.0000.0000.0000.000
35A110LEU0-0.002-0.00819.920-0.016-0.0160.0000.0000.0000.000
36A111LYS10.9200.95920.4250.0860.0860.0000.0000.0000.000
37A112GLU-1-0.836-0.89220.558-0.095-0.0950.0000.0000.0000.000
38A113ILE0-0.006-0.01016.387-0.006-0.0060.0000.0000.0000.000
39A114CYS0-0.044-0.00616.153-0.055-0.0550.0000.0000.0000.000
40A115ASP-1-0.916-0.95315.982-0.140-0.1400.0000.0000.0000.000
41A116ILE0-0.040-0.02414.2020.0100.0100.0000.0000.0000.000
42A117SER0-0.007-0.03012.206-0.023-0.0230.0000.0000.0000.000
43A118SER0-0.032-0.01511.125-0.045-0.0450.0000.0000.0000.000
44A119LYS10.9070.95812.1320.0560.0560.0000.0000.0000.000
45A120LEU0-0.032-0.0118.9250.0990.0990.0000.0000.0000.000
46A121GLY00.0090.0117.509-0.061-0.0610.0000.0000.0000.000
47A122ILE0-0.038-0.0117.674-0.117-0.1170.0000.0000.0000.000
48A123GLN0-0.020-0.0257.3010.1640.1640.0000.0000.0000.000
49A124VAL0-0.030-0.01210.7740.1150.1150.0000.0000.0000.000
50A125ILE00.0350.02412.582-0.112-0.1120.0000.0000.0000.000
51A126THR0-0.009-0.01815.3230.0820.0820.0000.0000.0000.000
52A127ALA00.005-0.00218.215-0.026-0.0260.0000.0000.0000.000
53A128PHE0-0.072-0.03520.7220.0270.0270.0000.0000.0000.000
54A129ALA00.0050.00323.8780.0120.0120.0000.0000.0000.000
55A130PHE0-0.027-0.02626.8100.0190.0190.0000.0000.0000.000
56A131SER00.0480.03628.848-0.002-0.0020.0000.0000.0000.000
57A132THR00.028-0.00630.0870.0090.0090.0000.0000.0000.000
58A133GLU-1-0.879-0.93631.246-0.157-0.1570.0000.0000.0000.000
59A134ASN0-0.083-0.04030.8670.0030.0030.0000.0000.0000.000
60A135TRP00.0530.01134.2130.0110.0110.0000.0000.0000.000
61A136LYS10.9020.95936.1750.1280.1280.0000.0000.0000.000
62A137ARG10.8640.95631.8720.1280.1280.0000.0000.0000.000
63A138ALA00.0470.02038.7520.0020.0020.0000.0000.0000.000
64A139LYS10.9860.98441.0880.0780.0780.0000.0000.0000.000
65A140GLY00.0660.04242.543-0.001-0.0010.0000.0000.0000.000
66A141GLU-1-0.737-0.81135.928-0.099-0.0990.0000.0000.0000.000
67A142VAL0-0.009-0.01437.705-0.003-0.0030.0000.0000.0000.000
68A143ASP-1-0.885-0.94638.410-0.082-0.0820.0000.0000.0000.000
69A144PHE0-0.002-0.00735.6940.0000.0000.0000.0000.0000.000
70A145LEU0-0.033-0.02232.997-0.002-0.0020.0000.0000.0000.000
71A146MET0-0.024-0.00634.537-0.005-0.0050.0000.0000.0000.000
72A147GLN00.0090.00436.482-0.001-0.0010.0000.0000.0000.000
73A148MET00.0100.02131.2730.0010.0010.0000.0000.0000.000
74A149PHE0-0.011-0.02630.452-0.005-0.0050.0000.0000.0000.000
75A150GLU-1-0.871-0.91532.090-0.092-0.0920.0000.0000.0000.000
76A151GLU-1-0.918-0.96232.668-0.085-0.0850.0000.0000.0000.000
77A152LEU0-0.025-0.00926.548-0.002-0.0020.0000.0000.0000.000
78A153TYR00.000-0.00828.945-0.003-0.0030.0000.0000.0000.000
79A154ASP-1-0.908-0.96830.325-0.075-0.0750.0000.0000.0000.000
80A155GLU-1-0.966-0.97227.528-0.099-0.0990.0000.0000.0000.000
81A156PHE00.015-0.01422.261-0.004-0.0040.0000.0000.0000.000
82A157SER0-0.0230.00625.707-0.003-0.0030.0000.0000.0000.000
83A158ARG10.9060.94227.7370.0690.0690.0000.0000.0000.000
84A159SER0-0.005-0.01022.9820.0020.0020.0000.0000.0000.000
85A160GLY00.0090.01022.0920.0020.0020.0000.0000.0000.000
86A161VAL0-0.0080.00018.828-0.013-0.0130.0000.0000.0000.000
87A162ARG10.9350.98117.8830.2760.2760.0000.0000.0000.000
88A163VAL00.012-0.00220.259-0.032-0.0320.0000.0000.0000.000
89A164SER0-0.023-0.02421.7790.0220.0220.0000.0000.0000.000
90A165ILE0-0.048-0.01923.525-0.012-0.0120.0000.0000.0000.000
91A166ILE0-0.047-0.01322.2770.0010.0010.0000.0000.0000.000
92A167GLY00.010-0.01426.1510.0000.0000.0000.0000.0000.000
93A168CYS0-0.054-0.00429.1780.0070.0070.0000.0000.0000.000
94A169LYS10.9440.94628.4530.1780.1780.0000.0000.0000.000
95A170THR00.005-0.00533.7120.0040.0040.0000.0000.0000.000
96A171ASP-1-0.894-0.93036.533-0.112-0.1120.0000.0000.0000.000
97A172LEU0-0.066-0.02432.5730.0030.0030.0000.0000.0000.000
98A173PRO00.0440.02437.2920.0040.0040.0000.0000.0000.000
99A174MET00.0360.01538.391-0.004-0.0040.0000.0000.0000.000
100A175THR0-0.055-0.05939.000-0.002-0.0020.0000.0000.0000.000
101A176LEU00.0650.04832.790-0.002-0.0020.0000.0000.0000.000
102A177GLN0-0.050-0.04634.499-0.007-0.0070.0000.0000.0000.000
103A178LYS10.9170.95334.6950.0720.0720.0000.0000.0000.000
104A179CYS00.0200.03932.2310.0000.0000.0000.0000.0000.000
105A180ILE0-0.0030.01529.291-0.004-0.0040.0000.0000.0000.000
106A181ALA0-0.009-0.00630.332-0.005-0.0050.0000.0000.0000.000
107A182LEU0-0.016-0.00231.648-0.001-0.0010.0000.0000.0000.000
108A183THR00.035-0.01427.0640.0030.0030.0000.0000.0000.000
109A184GLU-1-0.828-0.89426.442-0.181-0.1810.0000.0000.0000.000
110A185GLU-1-0.879-0.93227.227-0.108-0.1080.0000.0000.0000.000
111A186THR0-0.044-0.03629.158-0.001-0.0010.0000.0000.0000.000
112A187THR0-0.0330.00223.983-0.003-0.0030.0000.0000.0000.000
113A188LYS10.8420.91823.7070.1030.1030.0000.0000.0000.000
114A189GLY0-0.012-0.00723.616-0.007-0.0070.0000.0000.0000.000
115A190ASN0-0.048-0.01921.0730.0200.0200.0000.0000.0000.000
116A191LYS10.8930.92118.1480.1130.1130.0000.0000.0000.000
117A192GLY00.0010.02715.640-0.004-0.0040.0000.0000.0000.000
118A193LEU00.0140.01212.968-0.019-0.0190.0000.0000.0000.000
119A194HIS0-0.048-0.00814.9150.0700.0700.0000.0000.0000.000
120A195LEU00.0230.00016.310-0.053-0.0530.0000.0000.0000.000
121A196VAL00.0110.00018.5220.0350.0350.0000.0000.0000.000
122A197ILE00.003-0.00720.592-0.019-0.0190.0000.0000.0000.000
123A198ALA0-0.011-0.00223.4560.0130.0130.0000.0000.0000.000
124A199LEU00.022-0.00825.0510.0070.0070.0000.0000.0000.000
125A200ASN0-0.0170.00128.6630.0050.0050.0000.0000.0000.000
126A201TYR0-0.020-0.03324.142-0.004-0.0040.0000.0000.0000.000
127A202GLY00.0370.00127.5900.0070.0070.0000.0000.0000.000
128A203GLY00.0310.02025.885-0.001-0.0010.0000.0000.0000.000
129A204TYR0-0.043-0.03526.6110.0060.0060.0000.0000.0000.000
130A205TYR0-0.077-0.06728.9260.0120.0120.0000.0000.0000.000
131A206ASP-1-0.679-0.81524.599-0.266-0.2660.0000.0000.0000.000
132A207ILE00.0420.02025.7850.0040.0040.0000.0000.0000.000
133A208LEU0-0.043-0.02028.9180.0130.0130.0000.0000.0000.000
134A209GLN0-0.091-0.04527.9410.0220.0220.0000.0000.0000.000
135A210ALA00.0700.04028.1380.0080.0080.0000.0000.0000.000
136A211THR0-0.014-0.02330.2330.0070.0070.0000.0000.0000.000
137A212LYS10.9100.94932.9120.1380.1380.0000.0000.0000.000
138A213SER0-0.061-0.04931.5300.0120.0120.0000.0000.0000.000
139A214ILE00.0520.02529.5610.0070.0070.0000.0000.0000.000
140A215VAL0-0.003-0.00533.8640.0070.0070.0000.0000.0000.000
141A216ASN0-0.017-0.01937.2790.0110.0110.0000.0000.0000.000
142A217LYS10.9040.96130.9750.1580.1580.0000.0000.0000.000
143A218ALA00.0240.03437.2130.0050.0050.0000.0000.0000.000
144A219MET0-0.080-0.04738.9100.0060.0060.0000.0000.0000.000
145A220ASN0-0.119-0.06840.3460.0090.0090.0000.0000.0000.000
146A221GLY00.0150.01641.6220.0020.0020.0000.0000.0000.000
147A222LEU0-0.077-0.04536.4990.0000.0000.0000.0000.0000.000
148A223LEU0-0.083-0.03032.885-0.006-0.0060.0000.0000.0000.000
149A224ASP-1-0.839-0.91536.525-0.094-0.0940.0000.0000.0000.000
150A225VAL0-0.055-0.05435.823-0.007-0.0070.0000.0000.0000.000
151A226GLU-1-0.996-0.99934.831-0.121-0.1210.0000.0000.0000.000
152A227ASP-1-0.771-0.86632.329-0.129-0.1290.0000.0000.0000.000
153A228ILE0-0.111-0.05230.764-0.014-0.0140.0000.0000.0000.000
154A229ASN00.0190.00426.840-0.015-0.0150.0000.0000.0000.000
155A230LYS10.9000.92718.1960.4060.4060.0000.0000.0000.000
156A231ASN00.0260.00621.404-0.039-0.0390.0000.0000.0000.000
157A232LEU00.0120.02523.537-0.005-0.0050.0000.0000.0000.000
158A233PHE00.0460.00825.0810.0010.0010.0000.0000.0000.000
159A234ASP-1-0.804-0.90020.251-0.378-0.3780.0000.0000.0000.000
160A235GLN0-0.092-0.04222.3790.0030.0030.0000.0000.0000.000
161A236GLU-1-0.848-0.89124.549-0.168-0.1680.0000.0000.0000.000
162A237LEU0-0.057-0.00623.0230.0080.0080.0000.0000.0000.000
163A238GLU-1-0.793-0.88924.207-0.209-0.2090.0000.0000.0000.000
164A239SER0-0.067-0.02019.469-0.020-0.0200.0000.0000.0000.000
165A240LYS10.9180.97019.1850.2620.2620.0000.0000.0000.000
166A241CYS0-0.0170.01115.507-0.056-0.0560.0000.0000.0000.000
167A242PRO0-0.041-0.02611.1110.0440.0440.0000.0000.0000.000
168A243ASN00.0690.02013.2480.0450.0450.0000.0000.0000.000
169A244PRO0-0.051-0.02212.040-0.113-0.1130.0000.0000.0000.000
170A245ASP-1-0.801-0.8827.478-1.986-1.9860.0000.0000.0000.000
171A246LEU00.002-0.0028.601-0.021-0.0210.0000.0000.0000.000
172A247LEU0-0.039-0.01910.7040.1120.1120.0000.0000.0000.000
173A248ILE00.0070.01212.2870.0280.0280.0000.0000.0000.000
174A249ARG10.8100.89415.5330.2560.2560.0000.0000.0000.000
175A250THR00.006-0.00519.1910.0060.0060.0000.0000.0000.000
176A251GLY0-0.016-0.02221.199-0.002-0.0020.0000.0000.0000.000
177A252GLY0-0.063-0.02122.9600.0150.0150.0000.0000.0000.000
178A253ASP-1-0.863-0.92324.200-0.163-0.1630.0000.0000.0000.000
179A254GLN0-0.022-0.01021.399-0.015-0.0150.0000.0000.0000.000
180A255ARG10.8520.91923.0460.1630.1630.0000.0000.0000.000
181A256VAL00.1110.05020.132-0.007-0.0070.0000.0000.0000.000
182A257SER0-0.055-0.02722.746-0.001-0.0010.0000.0000.0000.000
183A258ASN00.0230.00326.347-0.007-0.0070.0000.0000.0000.000
184A259PHE00.0840.05219.3940.0060.0060.0000.0000.0000.000
185A260LEU00.0260.01318.3490.0160.0160.0000.0000.0000.000
186A261LEU0-0.050-0.03220.664-0.030-0.0300.0000.0000.0000.000
187A262TRP0-0.016-0.00520.989-0.005-0.0050.0000.0000.0000.000
188A263GLN00.009-0.01317.761-0.021-0.0210.0000.0000.0000.000
189A264LEU0-0.024-0.01716.429-0.066-0.0660.0000.0000.0000.000
190A265ALA0-0.047-0.00817.357-0.014-0.0140.0000.0000.0000.000
191A266TYR0-0.027-0.02813.5700.0510.0510.0000.0000.0000.000
192A267THR0-0.040-0.00912.412-0.066-0.0660.0000.0000.0000.000
193A268GLU-1-0.885-0.9338.682-0.732-0.7320.0000.0000.0000.000
194A269PHE0-0.052-0.03111.7420.0160.0160.0000.0000.0000.000
195A270TYR0-0.0060.00812.3900.0070.0070.0000.0000.0000.000
196A271PHE0-0.011-0.00914.4660.0060.0060.0000.0000.0000.000
197A272THR00.0580.03617.8870.0330.0330.0000.0000.0000.000
198A273LYS10.9660.95119.6320.0880.0880.0000.0000.0000.000
199A274THR00.0150.03021.0580.0080.0080.0000.0000.0000.000
200A275LEU00.0130.01122.795-0.025-0.0250.0000.0000.0000.000
201A276PHE00.0150.00120.7210.0050.0050.0000.0000.0000.000
202A277PRO00.000-0.01723.820-0.002-0.0020.0000.0000.0000.000
203A278ASP-1-0.909-0.95325.109-0.060-0.0600.0000.0000.0000.000
204A279PHE0-0.039-0.00515.5420.0080.0080.0000.0000.0000.000
205A280GLY00.0490.00420.194-0.007-0.0070.0000.0000.0000.000
206A281GLU-1-0.899-0.96215.8070.0100.0100.0000.0000.0000.000
207A282GLU-1-0.946-0.98915.5310.1320.1320.0000.0000.0000.000
208A283ASP-1-0.801-0.87215.743-0.065-0.0650.0000.0000.0000.000
209A284LEU0-0.034-0.01712.393-0.051-0.0510.0000.0000.0000.000
210A285LYS10.9330.95511.256-0.300-0.3000.0000.0000.0000.000
211A286GLU-1-0.884-0.93610.4640.0090.0090.0000.0000.0000.000
212A287ALA0-0.005-0.00111.3530.0010.0010.0000.0000.0000.000
213A288ILE0-0.005-0.0096.286-0.215-0.2150.0000.0000.0000.000
214A289ILE0-0.024-0.0106.136-0.130-0.1300.0000.0000.0000.000
215A290ASN0-0.011-0.0047.3440.0590.0590.0000.0000.0000.000
216A291PHE00.0280.0033.8030.0290.3210.000-0.075-0.2180.000
217A292GLN0-0.025-0.0202.102-1.988-0.6941.449-1.070-1.6730.000
218A293GLN0-0.080-0.0333.9060.4960.664-0.001-0.006-0.1610.000
219A294ARG10.8660.9476.5500.5100.5100.0000.0000.0000.000
220A295HIS0-0.029-0.0034.090-1.155-0.8540.001-0.041-0.2600.000