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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: 17JMZ

Calculation Name: 1M1L-A-Xray372

Preferred Name: Suppressor of fused homolog

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 1M1L

Chain ID: A

ChEMBL ID: CHEMBL5390

UniProt ID: Q9UMX1

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 236
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3017111.347303
FMO2-HF: Nuclear repulsion 2923691.41995
FMO2-HF: Total energy -93419.927354
FMO2-MP2: Total energy -93692.685874


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:27:ALA)


Summations of interaction energy for fragment #1(A:27:ALA)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.770.4890.028-1.065-1.220.001
Interaction energy analysis for fragmet #1(A:27:ALA)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.010 / q_NPA : -0.008
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A29LEU0-0.0270.0013.126-0.4401.8060.029-1.062-1.2120.001
4A30PHE00.0230.0055.322-0.752-0.739-0.001-0.003-0.0080.000
5A31PRO00.0390.0369.139-0.043-0.0430.0000.0000.0000.000
6A32PRO00.0100.0049.6900.0330.0330.0000.0000.0000.000
7A33GLY00.0600.04312.8050.0190.0190.0000.0000.0000.000
8A34LEU00.0020.00813.1990.0140.0140.0000.0000.0000.000
9A35HIS0-0.054-0.04412.9750.0650.0650.0000.0000.0000.000
10A36ALA00.0040.01615.3780.0070.0070.0000.0000.0000.000
11A37ILE00.0350.03018.3700.0050.0050.0000.0000.0000.000
12A38TYR0-0.017-0.03616.5090.0210.0210.0000.0000.0000.000
13A39GLY0-0.015-0.00719.3640.0100.0100.0000.0000.0000.000
14A40GLU-1-0.726-0.82421.0170.0530.0530.0000.0000.0000.000
15A41CYS0-0.052-0.02022.039-0.003-0.0030.0000.0000.0000.000
16A42ARG10.8980.95217.798-0.228-0.2280.0000.0000.0000.000
17A43ARG10.7420.84124.017-0.057-0.0570.0000.0000.0000.000
18A44LEU0-0.052-0.01926.903-0.005-0.0050.0000.0000.0000.000
19A45TYR0-0.038-0.03726.480-0.006-0.0060.0000.0000.0000.000
20A46PRO00.0150.02225.9330.0120.0120.0000.0000.0000.000
21A47ASP-1-0.931-0.97326.1120.1090.1090.0000.0000.0000.000
22A48GLN0-0.074-0.04725.564-0.001-0.0010.0000.0000.0000.000
23A49PRO00.0190.01520.9070.0030.0030.0000.0000.0000.000
24A50ASN0-0.051-0.02618.7750.0510.0510.0000.0000.0000.000
25A51PRO00.0070.02720.081-0.011-0.0110.0000.0000.0000.000
26A52LEU00.0060.00421.3360.0090.0090.0000.0000.0000.000
27A53GLN0-0.025-0.03016.1470.0060.0060.0000.0000.0000.000
28A54VAL0-0.0030.00720.0390.0020.0020.0000.0000.0000.000
29A55THR0-0.019-0.03615.226-0.006-0.0060.0000.0000.0000.000
30A56ALA00.0710.05217.3570.0030.0030.0000.0000.0000.000
31A57ILE0-0.029-0.01615.957-0.020-0.0200.0000.0000.0000.000
32A58VAL0-0.022-0.00815.296-0.020-0.0200.0000.0000.0000.000
33A59LYS10.8560.93412.7470.1780.1780.0000.0000.0000.000
34A60TYR00.0620.03615.686-0.019-0.0190.0000.0000.0000.000
35A61TRP00.001-0.0289.214-0.077-0.0770.0000.0000.0000.000
36A62LEU0-0.112-0.05611.024-0.058-0.0580.0000.0000.0000.000
37A63GLY0-0.013-0.00315.2900.0190.0190.0000.0000.0000.000
38A64GLY0-0.039-0.00618.2980.0230.0230.0000.0000.0000.000
39A65PRO0-0.026-0.02919.914-0.004-0.0040.0000.0000.0000.000
40A66ASP-1-0.830-0.91120.775-0.059-0.0590.0000.0000.0000.000
41A67PRO0-0.0050.00319.897-0.016-0.0160.0000.0000.0000.000
42A68LEU0-0.045-0.00219.981-0.003-0.0030.0000.0000.0000.000
43A69ASP-1-0.742-0.84313.724-0.251-0.2510.0000.0000.0000.000
44A70TYR0-0.051-0.03511.4830.0350.0350.0000.0000.0000.000
45A71VAL00.0450.02618.266-0.006-0.0060.0000.0000.0000.000
46A72SER0-0.0190.00619.9880.0080.0080.0000.0000.0000.000
47A73MET0-0.052-0.01522.082-0.011-0.0110.0000.0000.0000.000
48A74TYR00.001-0.00322.0660.0180.0180.0000.0000.0000.000
49A75ARG10.8240.89327.510-0.064-0.0640.0000.0000.0000.000
50A76ASN00.0410.02030.9770.0040.0040.0000.0000.0000.000
51A77VAL00.013-0.01033.247-0.004-0.0040.0000.0000.0000.000
52A78GLY0-0.0140.01836.421-0.003-0.0030.0000.0000.0000.000
53A79SER0-0.017-0.02838.4400.0020.0020.0000.0000.0000.000
54A80PRO00.0480.02941.425-0.003-0.0030.0000.0000.0000.000
55A81SER0-0.056-0.03844.639-0.002-0.0020.0000.0000.0000.000
56A82ALA0-0.021-0.00843.645-0.001-0.0010.0000.0000.0000.000
57A83ASN0-0.056-0.02945.599-0.002-0.0020.0000.0000.0000.000
58A84ILE00.0480.04439.467-0.001-0.0010.0000.0000.0000.000
59A85PRO00.0240.01540.6720.0030.0030.0000.0000.0000.000
60A86GLU-1-0.775-0.86435.8360.0470.0470.0000.0000.0000.000
61A87HIS0-0.042-0.02734.341-0.003-0.0030.0000.0000.0000.000
62A88TRP0-0.043-0.02930.9160.0080.0080.0000.0000.0000.000
63A89HIS0-0.0120.00728.6430.0010.0010.0000.0000.0000.000
64A90TYR0-0.028-0.04226.7180.0090.0090.0000.0000.0000.000
65A91ILE00.0320.00022.942-0.003-0.0030.0000.0000.0000.000
66A92SER0-0.019-0.03122.4650.0080.0080.0000.0000.0000.000
67A93PHE0-0.052-0.03317.3520.0150.0150.0000.0000.0000.000
68A94GLY0-0.004-0.02918.183-0.016-0.0160.0000.0000.0000.000
69A95LEU00.0120.03119.170-0.018-0.0180.0000.0000.0000.000
70A96SER0-0.028-0.02319.735-0.002-0.0020.0000.0000.0000.000
71A97ASP-1-0.796-0.90715.495-0.240-0.2400.0000.0000.0000.000
72A98LEU0-0.071-0.04413.8230.0230.0230.0000.0000.0000.000
73A99TYR0-0.077-0.0869.4840.0140.0140.0000.0000.0000.000
74A100GLY00.0140.00511.323-0.044-0.0440.0000.0000.0000.000
75A101ASP-1-0.874-0.9279.798-0.724-0.7240.0000.0000.0000.000
76A102ASN00.009-0.00212.6850.0220.0220.0000.0000.0000.000
77A103ARG10.7690.8837.1990.9680.9680.0000.0000.0000.000
78A104VAL0-0.058-0.03214.2460.0080.0080.0000.0000.0000.000
79A105HIS00.0100.01317.3010.0240.0240.0000.0000.0000.000
80A106GLU-1-0.947-0.96918.470-0.172-0.1720.0000.0000.0000.000
81A107PHE0-0.015-0.00717.5740.0200.0200.0000.0000.0000.000
82A108THR00.0070.00019.6510.0040.0040.0000.0000.0000.000
83A109GLY0-0.041-0.01821.1490.0130.0130.0000.0000.0000.000
84A110THR0-0.029-0.04720.760-0.002-0.0020.0000.0000.0000.000
85A111ASP-1-0.913-0.92722.525-0.029-0.0290.0000.0000.0000.000
86A112GLY00.0040.01625.3530.0050.0050.0000.0000.0000.000
87A113PRO0-0.015-0.00225.0090.0050.0050.0000.0000.0000.000
88A114SER00.0130.01119.404-0.011-0.0110.0000.0000.0000.000
89A115GLY00.0090.00221.4190.0050.0050.0000.0000.0000.000
90A116PHE00.0250.00522.1190.0070.0070.0000.0000.0000.000
91A117GLY00.001-0.00524.2640.0080.0080.0000.0000.0000.000
92A118PHE0-0.080-0.03425.3550.0100.0100.0000.0000.0000.000
93A119GLU-1-0.665-0.77720.663-0.058-0.0580.0000.0000.0000.000
94A120LEU00.0160.01124.8290.0050.0050.0000.0000.0000.000
95A121THR0-0.038-0.05926.3900.0050.0050.0000.0000.0000.000
96A122PHE00.0060.00128.868-0.004-0.0040.0000.0000.0000.000
97A123ARG10.8100.88831.333-0.023-0.0230.0000.0000.0000.000
98A124LEU00.0000.02533.747-0.003-0.0030.0000.0000.0000.000
99A125LYS10.8180.88235.579-0.011-0.0110.0000.0000.0000.000
100A126ARG10.7680.88135.543-0.040-0.0400.0000.0000.0000.000
101A127GLU-1-0.809-0.89737.6760.0160.0160.0000.0000.0000.000
102A128THR0-0.053-0.03839.0630.0020.0020.0000.0000.0000.000
103A129GLY0-0.001-0.00439.197-0.002-0.0020.0000.0000.0000.000
104A130GLU-1-0.773-0.86034.6670.0280.0280.0000.0000.0000.000
105A131SER0-0.003-0.01633.2480.0010.0010.0000.0000.0000.000
106A132ALA0-0.027-0.01428.7500.0060.0060.0000.0000.0000.000
107A133PRO00.0510.03027.403-0.004-0.0040.0000.0000.0000.000
108A134PRO0-0.0090.02029.0790.0010.0010.0000.0000.0000.000
109A135THR00.054-0.00425.912-0.002-0.0020.0000.0000.0000.000
110A136TRP00.0510.02827.783-0.004-0.0040.0000.0000.0000.000
111A137PRO00.0290.01729.492-0.005-0.0050.0000.0000.0000.000
112A138ALA00.0110.00624.497-0.003-0.0030.0000.0000.0000.000
113A139GLU-1-0.787-0.85526.387-0.049-0.0490.0000.0000.0000.000
114A140LEU0-0.0110.00328.039-0.005-0.0050.0000.0000.0000.000
115A141MET0-0.034-0.00926.176-0.003-0.0030.0000.0000.0000.000
116A142GLN00.0270.01121.114-0.011-0.0110.0000.0000.0000.000
117A143GLY00.007-0.00226.120-0.008-0.0080.0000.0000.0000.000
118A144LEU0-0.001-0.00829.587-0.004-0.0040.0000.0000.0000.000
119A145ALA00.0210.01124.584-0.003-0.0030.0000.0000.0000.000
120A146ARG10.7220.80625.3120.0520.0520.0000.0000.0000.000
121A147TYR0-0.031-0.01427.496-0.004-0.0040.0000.0000.0000.000
122A148VAL00.0050.03327.171-0.001-0.0010.0000.0000.0000.000
123A149PHE00.010-0.01420.652-0.003-0.0030.0000.0000.0000.000
124A150GLN0-0.065-0.02626.257-0.011-0.0110.0000.0000.0000.000
125A151SER0-0.085-0.04928.8400.0040.0040.0000.0000.0000.000
126A152GLU-1-0.940-0.96227.432-0.094-0.0940.0000.0000.0000.000
127A153ASN0-0.057-0.02429.5820.0050.0050.0000.0000.0000.000
128A154THR0-0.0060.00128.679-0.001-0.0010.0000.0000.0000.000
129A155PHE0-0.011-0.00430.8660.0020.0020.0000.0000.0000.000
130A156CYS0-0.051-0.04032.4230.0000.0000.0000.0000.0000.000
131A157SER0-0.050-0.05534.7910.0010.0010.0000.0000.0000.000
132A158GLY00.001-0.01536.4560.0000.0000.0000.0000.0000.000
133A159ASP-1-0.835-0.90336.274-0.025-0.0250.0000.0000.0000.000
134A160HIS0-0.011-0.01539.0040.0020.0020.0000.0000.0000.000
135A161VAL00.0150.00535.275-0.003-0.0030.0000.0000.0000.000
136A162SER0-0.001-0.00438.6720.0020.0020.0000.0000.0000.000
137A163TRP0-0.036-0.03432.331-0.003-0.0030.0000.0000.0000.000
138A164HIS0-0.037-0.02439.214-0.001-0.0010.0000.0000.0000.000
139A165SER00.0290.01939.0390.0000.0000.0000.0000.0000.000
140A166PRO0-0.0140.01540.0320.0000.0000.0000.0000.0000.000
141A167LEU0-0.028-0.01636.083-0.001-0.0010.0000.0000.0000.000
142A168ASP-1-0.820-0.88835.213-0.001-0.0010.0000.0000.0000.000
143A169ASN0-0.116-0.05734.596-0.002-0.0020.0000.0000.0000.000
144A170SER0-0.074-0.05738.5220.0000.0000.0000.0000.0000.000
145A171GLU-1-0.924-0.98241.383-0.006-0.0060.0000.0000.0000.000
146A172SER0-0.053-0.03142.3200.0000.0000.0000.0000.0000.000
147A173ARG10.8040.86844.2840.0000.0000.0000.0000.0000.000
148A174ILE0-0.023-0.01640.356-0.001-0.0010.0000.0000.0000.000
149A175GLN0-0.018-0.02641.451-0.002-0.0020.0000.0000.0000.000
150A176HIS00.0110.02440.421-0.004-0.0040.0000.0000.0000.000
151A177MET0-0.0120.00434.5840.0030.0030.0000.0000.0000.000
152A178LEU00.0130.01438.984-0.002-0.0020.0000.0000.0000.000
153A179LEU00.0020.00933.2070.0010.0010.0000.0000.0000.000
154A180THR0-0.010-0.01135.1860.0000.0000.0000.0000.0000.000
155A181GLU-1-0.778-0.84833.266-0.001-0.0010.0000.0000.0000.000
156A182ASP-1-0.710-0.81830.6940.0280.0280.0000.0000.0000.000
157A183PRO0-0.056-0.00532.7080.0010.0010.0000.0000.0000.000
158A184GLN0-0.022-0.01531.8240.0040.0040.0000.0000.0000.000
159A185MET0-0.047-0.00424.1690.0080.0080.0000.0000.0000.000
160A186GLN0-0.003-0.00128.626-0.010-0.0100.0000.0000.0000.000
161A187PRO00.001-0.00827.2230.0010.0010.0000.0000.0000.000
162A188VAL0-0.010-0.00121.5030.0070.0070.0000.0000.0000.000
163A189GLN0-0.011-0.01422.918-0.010-0.0100.0000.0000.0000.000
164A190THR00.027-0.00617.2750.0190.0190.0000.0000.0000.000
165A191PRO0-0.051-0.01914.998-0.007-0.0070.0000.0000.0000.000
166A192PHE0-0.007-0.00612.166-0.021-0.0210.0000.0000.0000.000
167A193GLY00.0770.05818.270-0.010-0.0100.0000.0000.0000.000
168A194VAL0-0.044-0.03121.6010.0120.0120.0000.0000.0000.000
169A195VAL00.0040.01120.507-0.010-0.0100.0000.0000.0000.000
170A196THR0-0.028-0.03423.9220.0100.0100.0000.0000.0000.000
171A197PHE00.042-0.00123.201-0.001-0.0010.0000.0000.0000.000
172A198LEU00.0200.02228.3240.0030.0030.0000.0000.0000.000
173A199GLN0-0.024-0.01530.5860.0020.0020.0000.0000.0000.000
174A200ILE00.026-0.00630.437-0.002-0.0020.0000.0000.0000.000
175A201VAL0-0.033-0.01634.0940.0040.0040.0000.0000.0000.000
176A202GLY00.007-0.00337.773-0.003-0.0030.0000.0000.0000.000
177A203VAL0-0.038-0.02039.4070.0020.0020.0000.0000.0000.000
178A204CYS00.0020.00043.046-0.001-0.0010.0000.0000.0000.000
179A205THR00.005-0.02946.039-0.001-0.0010.0000.0000.0000.000
180A206GLU-1-0.785-0.87147.512-0.006-0.0060.0000.0000.0000.000
181A207GLU-1-0.750-0.85446.2850.0000.0000.0000.0000.0000.000
182A208LEU0-0.0070.00942.9470.0000.0000.0000.0000.0000.000
183A209HIS0-0.062-0.04445.8600.0000.0000.0000.0000.0000.000
184A210SER00.0540.02449.2170.0000.0000.0000.0000.0000.000
185A211ALA00.007-0.01345.0320.0000.0000.0000.0000.0000.000
186A212GLN0-0.070-0.03044.7300.0000.0000.0000.0000.0000.000
187A213GLN0-0.068-0.03348.149-0.001-0.0010.0000.0000.0000.000
188A214TRP0-0.0190.01650.2630.0010.0010.0000.0000.0000.000
189A215ASN0-0.021-0.00346.033-0.001-0.0010.0000.0000.0000.000
190A216GLY00.0660.02742.9720.0010.0010.0000.0000.0000.000
191A217GLN0-0.005-0.02339.2510.0030.0030.0000.0000.0000.000
192A218GLY00.0360.02143.8670.0020.0020.0000.0000.0000.000
193A219ILE0-0.006-0.00745.7530.0020.0020.0000.0000.0000.000
194A220LEU00.004-0.00440.1200.0020.0020.0000.0000.0000.000
195A221GLU-1-0.920-0.94843.8720.0030.0030.0000.0000.0000.000
196A222LEU0-0.034-0.01146.5270.0020.0020.0000.0000.0000.000
197A223LEU00.0360.01943.0910.0010.0010.0000.0000.0000.000
198A224ARG10.8810.95039.073-0.003-0.0030.0000.0000.0000.000
199A225THR0-0.123-0.06445.0120.0010.0010.0000.0000.0000.000
200A226VAL00.0210.01447.5150.0000.0000.0000.0000.0000.000
201A227PRO00.0400.00845.7650.0000.0000.0000.0000.0000.000
202A228ILE0-0.042-0.02845.0330.0010.0010.0000.0000.0000.000
203A229ALA0-0.015-0.01745.319-0.001-0.0010.0000.0000.0000.000
204A230GLY00.0320.02441.889-0.002-0.0020.0000.0000.0000.000
205A231GLY0-0.0030.02941.8490.0020.0020.0000.0000.0000.000
206A232PRO00.007-0.01542.038-0.001-0.0010.0000.0000.0000.000
207A233TRP0-0.047-0.03636.4980.0010.0010.0000.0000.0000.000
208A234LEU00.0100.01737.4890.0010.0010.0000.0000.0000.000
209A235ILE0-0.019-0.00537.369-0.001-0.0010.0000.0000.0000.000
210A236THR00.0450.02837.375-0.003-0.0030.0000.0000.0000.000
211A237ASP-1-0.786-0.89638.9150.0150.0150.0000.0000.0000.000
212A238MET0-0.0060.00437.953-0.001-0.0010.0000.0000.0000.000
213A239ARG10.8500.93440.900-0.017-0.0170.0000.0000.0000.000
214A240ARG10.7960.89744.308-0.003-0.0030.0000.0000.0000.000
215A241GLY00.0280.02646.516-0.001-0.0010.0000.0000.0000.000
216A242GLU-1-0.931-0.95649.7580.0040.0040.0000.0000.0000.000
217A243THR0-0.024-0.04149.4460.0000.0000.0000.0000.0000.000
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