FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 17RMZ

Calculation Name: 5IWZ-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 5IWZ

Chain ID: A

ChEMBL ID:

UniProt ID: Q9CUU3

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 376
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -6432232.6222
FMO2-HF: Nuclear repulsion 6275860.470144
FMO2-HF: Total energy -156372.152056
FMO2-MP2: Total energy -156816.855299


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:MET)


Summations of interaction energy for fragment #1(A:1:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.809-1.4990.25-1.089-1.4710.007
Interaction energy analysis for fragmet #1(A:1:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.022 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3VAL00.0450.0273.912-0.0511.123-0.005-0.491-0.6780.002
4A4ARG10.8710.9302.861-4.555-3.4190.255-0.598-0.7930.005
5A5PRO00.0170.0238.297-0.160-0.1600.0000.0000.0000.000
6A6ASP-1-0.778-0.88612.035-0.134-0.1340.0000.0000.0000.000
7A7LEU00.0810.03514.662-0.037-0.0370.0000.0000.0000.000
8A8GLN0-0.040-0.03316.8190.0120.0120.0000.0000.0000.000
9A9GLN0-0.083-0.05415.610-0.020-0.0200.0000.0000.0000.000
10A10LEU00.0690.03818.902-0.025-0.0250.0000.0000.0000.000
11A11GLU-1-0.744-0.84021.450-0.172-0.1720.0000.0000.0000.000
12A12LYS10.9120.96118.7690.3370.3370.0000.0000.0000.000
13A13CYS0-0.0070.00818.475-0.029-0.0290.0000.0000.0000.000
14A14ILE00.0310.02820.4710.0000.0000.0000.0000.0000.000
15A15ASP-1-0.812-0.89823.587-0.224-0.2240.0000.0000.0000.000
16A16ASP-1-0.863-0.91918.486-0.465-0.4650.0000.0000.0000.000
17A17ALA00.0300.02721.3890.0000.0000.0000.0000.0000.000
18A18LEU0-0.031-0.00723.1600.0120.0120.0000.0000.0000.000
19A19ARG10.8480.90524.3670.2340.2340.0000.0000.0000.000
20A20LYS10.8390.90518.7970.4420.4420.0000.0000.0000.000
21A21ASN00.0160.02922.0110.0110.0110.0000.0000.0000.000
22A22ASP-1-0.828-0.88716.541-0.527-0.5270.0000.0000.0000.000
23A23PHE00.0990.02919.708-0.008-0.0080.0000.0000.0000.000
24A24LYS10.8280.90512.9280.6030.6030.0000.0000.0000.000
25A25PRO0-0.004-0.00615.0890.0140.0140.0000.0000.0000.000
26A26LEU00.0290.01016.0900.0330.0330.0000.0000.0000.000
27A27LEU00.0390.01217.1370.0350.0350.0000.0000.0000.000
28A28ALA0-0.0040.00313.1850.0510.0510.0000.0000.0000.000
29A29LEU0-0.022-0.01915.0910.0660.0660.0000.0000.0000.000
30A30LEU0-0.045-0.01917.4770.0430.0430.0000.0000.0000.000
31A31GLN0-0.058-0.02214.8530.0660.0660.0000.0000.0000.000
32A32ILE0-0.066-0.01514.4710.0640.0640.0000.0000.0000.000
33A33ASP-1-0.858-0.91816.9550.1400.1400.0000.0000.0000.000
34A34ILE0-0.055-0.02919.646-0.007-0.0070.0000.0000.0000.000
35A35CYS0-0.0120.00320.4940.0250.0250.0000.0000.0000.000
36A36GLU-1-0.840-0.92722.9160.0130.0130.0000.0000.0000.000
37A37ASP-1-0.898-0.95222.6570.0640.0640.0000.0000.0000.000
38A38VAL0-0.040-0.00919.977-0.019-0.0190.0000.0000.0000.000
39A39LYS10.8000.89622.7270.0060.0060.0000.0000.0000.000
40A40ILE00.0110.01121.706-0.016-0.0160.0000.0000.0000.000
41A41LYS10.8450.92023.7820.1720.1720.0000.0000.0000.000
42A42CYS0-0.0190.00424.997-0.023-0.0230.0000.0000.0000.000
43A43SER0-0.038-0.06127.6450.0130.0130.0000.0000.0000.000
44A44LYN00.0670.05030.3320.0070.0070.0000.0000.0000.000
45A45GLN00.0110.00132.2330.0120.0120.0000.0000.0000.000
46A46PHE00.0220.00826.062-0.005-0.0050.0000.0000.0000.000
47A47LEU00.0860.03830.763-0.004-0.0040.0000.0000.0000.000
48A48ARG10.8220.87933.5210.1260.1260.0000.0000.0000.000
49A49LYS10.7840.87226.9110.1890.1890.0000.0000.0000.000
50A50LEU00.0400.01028.150-0.007-0.0070.0000.0000.0000.000
51A51ASP-1-0.777-0.86030.977-0.085-0.0850.0000.0000.0000.000
52A52ASP-1-0.820-0.86831.938-0.132-0.1320.0000.0000.0000.000
53A53LEU0-0.044-0.02025.919-0.003-0.0030.0000.0000.0000.000
54A54ILE00.0230.01530.335-0.001-0.0010.0000.0000.0000.000
55A55CYS00.0110.01132.1060.0070.0070.0000.0000.0000.000
56A56ARG10.7710.87926.2710.1860.1860.0000.0000.0000.000
57A57GLU-1-0.774-0.86827.389-0.164-0.1640.0000.0000.0000.000
58A58LEU00.0320.02031.0630.0040.0040.0000.0000.0000.000
59A59ASN0-0.066-0.04134.4620.0060.0060.0000.0000.0000.000
60A60LYS10.7170.84027.0190.1640.1640.0000.0000.0000.000
61A61LYS10.8440.92032.6940.0680.0680.0000.0000.0000.000
62A62ASP-1-0.849-0.91027.925-0.137-0.1370.0000.0000.0000.000
63A63ILE0-0.037-0.02929.155-0.002-0.0020.0000.0000.0000.000
64A64GLN00.0510.02024.9590.0110.0110.0000.0000.0000.000
65A65THR0-0.058-0.04324.2750.0040.0040.0000.0000.0000.000
66A66VAL00.0570.03126.238-0.003-0.0030.0000.0000.0000.000
67A67SER00.0320.00127.850-0.001-0.0010.0000.0000.0000.000
68A68SER0-0.096-0.05223.001-0.003-0.0030.0000.0000.0000.000
69A69ILE0-0.0020.00124.890-0.003-0.0030.0000.0000.0000.000
70A70LEU00.0230.01526.7220.0030.0030.0000.0000.0000.000
71A71ILE00.0690.03925.3570.0050.0050.0000.0000.0000.000
72A72SER0-0.076-0.05223.5680.0050.0050.0000.0000.0000.000
73A73ILE0-0.050-0.02725.2500.0020.0020.0000.0000.0000.000
74A74GLY00.0550.02828.2700.0050.0050.0000.0000.0000.000
75A75ARG10.8660.93320.148-0.024-0.0240.0000.0000.0000.000
76A76CYS0-0.025-0.01423.5390.0050.0050.0000.0000.0000.000
77A77SER0-0.019-0.01125.898-0.003-0.0030.0000.0000.0000.000
78A78LYS10.9890.99129.128-0.021-0.0210.0000.0000.0000.000
79A79ASN0-0.023-0.01525.068-0.001-0.0010.0000.0000.0000.000
80A80ILE00.0060.00726.170-0.013-0.0130.0000.0000.0000.000
81A81PHE0-0.013-0.00627.6520.0090.0090.0000.0000.0000.000
82A82ILE0-0.027-0.01029.010-0.014-0.0140.0000.0000.0000.000
83A83LEU0-0.013-0.01831.6570.0060.0060.0000.0000.0000.000
84A84GLY00.0030.00931.6290.0050.0050.0000.0000.0000.000
85A85GLN0-0.0220.00032.6610.0120.0120.0000.0000.0000.000
86A86ALA00.0800.03332.910-0.005-0.0050.0000.0000.0000.000
87A87GLY00.0350.02131.249-0.002-0.0020.0000.0000.0000.000
88A88LEU00.0420.02832.280-0.005-0.0050.0000.0000.0000.000
89A89GLN00.0980.05134.1520.0000.0000.0000.0000.0000.000
90A90THR0-0.076-0.04834.869-0.001-0.0010.0000.0000.0000.000
91A91MET0-0.014-0.01231.268-0.007-0.0070.0000.0000.0000.000
92A92ILE00.0890.05136.331-0.002-0.0020.0000.0000.0000.000
93A93LYS10.8550.92039.4620.0580.0580.0000.0000.0000.000
94A94GLN0-0.113-0.08336.276-0.002-0.0020.0000.0000.0000.000
95A95GLY00.0440.03740.215-0.004-0.0040.0000.0000.0000.000
96A96LEU0-0.034-0.01735.164-0.002-0.0020.0000.0000.0000.000
97A97VAL00.0650.04138.654-0.001-0.0010.0000.0000.0000.000
98A98GLN00.0580.00741.270-0.003-0.0030.0000.0000.0000.000
99A99LYS10.7940.88837.5820.0740.0740.0000.0000.0000.000
100A100MET00.0080.01335.880-0.002-0.0020.0000.0000.0000.000
101A101VAL00.0360.03139.0740.0010.0010.0000.0000.0000.000
102A102SER0-0.023-0.00240.0700.0010.0010.0000.0000.0000.000
103A103TRP0-0.011-0.03734.157-0.002-0.0020.0000.0000.0000.000
104A104PHE00.0490.04138.295-0.001-0.0010.0000.0000.0000.000
105A105GLU-1-0.813-0.89540.746-0.039-0.0390.0000.0000.0000.000
106A106ASN0-0.084-0.06138.673-0.002-0.0020.0000.0000.0000.000
107A107SER00.006-0.00637.927-0.003-0.0030.0000.0000.0000.000
108A108LYS10.7910.88039.5730.0390.0390.0000.0000.0000.000
109A109GLU-1-0.860-0.91241.550-0.058-0.0580.0000.0000.0000.000
110A110ILE0-0.022-0.00635.7800.0010.0010.0000.0000.0000.000
111A111ILE00.005-0.01339.7180.0030.0030.0000.0000.0000.000
112A112LEU0-0.0310.00641.5510.0040.0040.0000.0000.0000.000
113A113ASN0-0.007-0.00238.680-0.001-0.0010.0000.0000.0000.000
114A114GLN0-0.037-0.01938.6800.0010.0010.0000.0000.0000.000
115A115GLN00.0110.02239.7890.0050.0050.0000.0000.0000.000
116A116GLN0-0.055-0.03641.2940.0030.0030.0000.0000.0000.000
117A117SER0-0.056-0.03639.203-0.004-0.0040.0000.0000.0000.000
118A118LYS10.8290.88732.6460.0410.0410.0000.0000.0000.000
119A119ASP-1-0.786-0.88333.845-0.032-0.0320.0000.0000.0000.000
120A120GLU-1-0.858-0.92833.4520.0050.0050.0000.0000.0000.000
121A121ALA00.0040.02231.1240.0010.0010.0000.0000.0000.000
122A122VAL00.006-0.01532.539-0.004-0.0040.0000.0000.0000.000
123A123MET00.0050.02435.369-0.002-0.0020.0000.0000.0000.000
124A124ASN00.004-0.01731.3120.0050.0050.0000.0000.0000.000
125A125MET0-0.0180.01031.924-0.004-0.0040.0000.0000.0000.000
126A126ILE0-0.032-0.02833.142-0.003-0.0030.0000.0000.0000.000
127A127GLU-1-0.896-0.93734.5490.0110.0110.0000.0000.0000.000
128A128ASP-1-0.808-0.90330.384-0.023-0.0230.0000.0000.0000.000
129A129LEU0-0.079-0.03532.911-0.002-0.0020.0000.0000.0000.000
130A130PHE00.041-0.00635.350-0.001-0.0010.0000.0000.0000.000
131A131ASP-1-0.842-0.91633.6610.0120.0120.0000.0000.0000.000
132A132LEU0-0.068-0.03831.7760.0000.0000.0000.0000.0000.000
133A133LEU0-0.027-0.01834.425-0.001-0.0010.0000.0000.0000.000
134A134MET00.0530.02837.595-0.001-0.0010.0000.0000.0000.000
135A135VAL0-0.050-0.02332.6280.0010.0010.0000.0000.0000.000
136A136ILE0-0.061-0.04235.615-0.002-0.0020.0000.0000.0000.000
137A137TYR0-0.022-0.03437.9850.0000.0000.0000.0000.0000.000
138A138ASP-1-0.812-0.91338.7320.0050.0050.0000.0000.0000.000
139A139ILE0-0.113-0.03335.2130.0020.0020.0000.0000.0000.000
140A140SER0-0.039-0.05038.6820.0000.0000.0000.0000.0000.000
141A141ASP-1-0.809-0.90342.244-0.006-0.0060.0000.0000.0000.000
142A142GLU-1-0.880-0.91144.145-0.027-0.0270.0000.0000.0000.000
143A143GLY00.0140.00141.738-0.002-0.0020.0000.0000.0000.000
144A144LYS10.8260.91642.6580.0010.0010.0000.0000.0000.000
145A145ASN0-0.039-0.02545.0160.0010.0010.0000.0000.0000.000
146A146GLN0-0.036-0.02044.678-0.003-0.0030.0000.0000.0000.000
147A147VAL0-0.0090.00741.784-0.002-0.0020.0000.0000.0000.000
148A148LEU00.0140.00444.8970.0000.0000.0000.0000.0000.000
149A149GLU-1-0.914-0.95748.282-0.019-0.0190.0000.0000.0000.000
150A150SER0-0.103-0.06045.805-0.002-0.0020.0000.0000.0000.000
151A151PHE0-0.033-0.04241.518-0.002-0.0020.0000.0000.0000.000
152A152ILE00.0300.03346.8560.0010.0010.0000.0000.0000.000
153A153PRO00.0830.03249.8950.0010.0010.0000.0000.0000.000
154A154GLN0-0.0140.00046.5700.0010.0010.0000.0000.0000.000
155A155ILE0-0.010-0.00444.476-0.001-0.0010.0000.0000.0000.000
156A156CYS0-0.0050.00047.9540.0020.0020.0000.0000.0000.000
157A157ALA0-0.001-0.00450.4970.0010.0010.0000.0000.0000.000
158A158LEU0-0.051-0.02443.8640.0000.0000.0000.0000.0000.000
159A159VAL00.0270.01448.4620.0010.0010.0000.0000.0000.000
160A160ILE0-0.0280.00150.2750.0010.0010.0000.0000.0000.000
161A161ASP-1-0.785-0.86850.019-0.023-0.0230.0000.0000.0000.000
162A162SER0-0.002-0.00550.5800.0000.0000.0000.0000.0000.000
163A163ARG10.7940.86649.0640.0280.0280.0000.0000.0000.000
164A164VAL0-0.046-0.00844.865-0.001-0.0010.0000.0000.0000.000
165A165ASN00.0110.00242.8010.0040.0040.0000.0000.0000.000
166A166PHE00.0940.03644.832-0.001-0.0010.0000.0000.0000.000
167A167CYS00.0190.02341.1610.0020.0020.0000.0000.0000.000
168A168ILE00.0370.00539.8290.0000.0000.0000.0000.0000.000
169A169GLN0-0.054-0.01442.4880.0020.0020.0000.0000.0000.000
170A170GLN00.035-0.00944.3680.0000.0000.0000.0000.0000.000
171A171GLU-1-0.831-0.90138.9570.0100.0100.0000.0000.0000.000
172A172ALA00.0030.00442.4310.0000.0000.0000.0000.0000.000
173A173LEU00.0050.00843.8960.0000.0000.0000.0000.0000.000
174A174LYS10.8890.95641.985-0.011-0.0110.0000.0000.0000.000
175A175LYS10.8190.90237.425-0.003-0.0030.0000.0000.0000.000
176A176MET0-0.017-0.01143.628-0.001-0.0010.0000.0000.0000.000
177A177ASN0-0.022-0.03646.956-0.002-0.0020.0000.0000.0000.000
178A178LEU00.0020.00441.4330.0010.0010.0000.0000.0000.000
179A179MET0-0.040-0.02343.977-0.001-0.0010.0000.0000.0000.000
180A180LEU00.0070.01746.209-0.001-0.0010.0000.0000.0000.000
181A181ASP-1-0.881-0.90147.3590.0140.0140.0000.0000.0000.000
182A182ARG10.8590.91646.5400.0000.0000.0000.0000.0000.000
183A183ILE0-0.102-0.04248.749-0.001-0.0010.0000.0000.0000.000
184A193ASN00.0740.03456.7000.0000.0000.0000.0000.0000.000
185A194GLN00.010-0.01360.9830.0010.0010.0000.0000.0000.000
186A195GLU-1-0.898-0.93254.266-0.023-0.0230.0000.0000.0000.000
187A196MET00.0330.01454.5630.0000.0000.0000.0000.0000.000
188A197LEU00.0160.00758.0150.0010.0010.0000.0000.0000.000
189A198THR0-0.039-0.03060.1930.0010.0010.0000.0000.0000.000
190A199LEU0-0.042-0.01754.1010.0010.0010.0000.0000.0000.000
191A200MET0-0.002-0.00857.5980.0010.0010.0000.0000.0000.000
192A201SER00.0480.02659.0210.0010.0010.0000.0000.0000.000
193A202ASN0-0.021-0.01357.8680.0010.0010.0000.0000.0000.000
194A203MET0-0.032-0.02153.6100.0000.0000.0000.0000.0000.000
195A204GLY00.0350.02357.6560.0010.0010.0000.0000.0000.000
196A205GLU-1-0.919-0.96960.990-0.008-0.0080.0000.0000.0000.000
197A206ARG10.7790.88451.5750.0090.0090.0000.0000.0000.000
198A207ILE00.0020.00557.1550.0010.0010.0000.0000.0000.000
199A208LEU0-0.028-0.01358.4250.0010.0010.0000.0000.0000.000
200A209ASP-1-0.912-0.95757.257-0.007-0.0070.0000.0000.0000.000
201A210VAL0-0.028-0.00352.4630.0000.0000.0000.0000.0000.000
202A211GLY00.013-0.00853.4250.0000.0000.0000.0000.0000.000
203A212ASP-1-0.771-0.88049.6910.0080.0080.0000.0000.0000.000
204A213TYR00.0710.02952.641-0.001-0.0010.0000.0000.0000.000
205A214GLU-1-0.935-0.95445.9100.0150.0150.0000.0000.0000.000
206A215LEU0-0.018-0.01648.100-0.001-0.0010.0000.0000.0000.000
207A216GLN0-0.048-0.02151.3020.0000.0000.0000.0000.0000.000
208A217VAL00.0410.01152.855-0.001-0.0010.0000.0000.0000.000
209A218GLY00.0590.02851.0110.0000.0000.0000.0000.0000.000
210A219ILE0-0.015-0.00951.983-0.001-0.0010.0000.0000.0000.000
211A220VAL00.0220.00754.386-0.001-0.0010.0000.0000.0000.000
212A221GLU-1-0.815-0.89351.2540.0090.0090.0000.0000.0000.000
213A222ALA0-0.009-0.00752.540-0.001-0.0010.0000.0000.0000.000
214A223LEU0-0.033-0.01854.245-0.001-0.0010.0000.0000.0000.000
215A224CYS0-0.057-0.01357.9630.0000.0000.0000.0000.0000.000
216A225ARG10.8020.88450.474-0.009-0.0090.0000.0000.0000.000
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