FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 1N44Z

Calculation Name: 5HAW-A-Xray372

Preferred Name: Cell division protein ftsZ

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 5HAW

Chain ID: A

ChEMBL ID: CHEMBL3999

UniProt ID: P0A9A6

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2165238.230522
FMO2-HF: Nuclear repulsion 2088144.111474
FMO2-HF: Total energy -77094.119048
FMO2-MP2: Total energy -77320.995639


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:7:ILE)


Summations of interaction energy for fragment #1(A:7:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-17.672-14.98510.738-6.217-7.207-0.048
Interaction energy analysis for fragmet #1(A:7:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.024 / q_NPA : -0.026
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A9ARG10.9120.9523.868-2.550-0.853-0.010-0.784-0.9030.002
4A10ARG10.8750.9222.227-1.2730.0891.754-1.280-1.8370.008
5A11GLU-1-0.727-0.8591.942-14.059-14.5468.995-4.135-4.372-0.058
6A12GLU-1-0.784-0.8854.5310.9011.016-0.001-0.018-0.0950.000
7A13ILE0-0.022-0.0067.121-0.136-0.1360.0000.0000.0000.000
8A14LEU0-0.038-0.0085.949-0.063-0.0630.0000.0000.0000.000
9A15GLN0-0.035-0.0188.432-0.097-0.0970.0000.0000.0000.000
10A16ALA00.0340.01910.3560.0300.0300.0000.0000.0000.000
11A17LEU0-0.039-0.02711.8690.0050.0050.0000.0000.0000.000
12A18ALA00.0210.00512.7000.0030.0030.0000.0000.0000.000
13A19GLU-1-0.797-0.89314.312-0.117-0.1170.0000.0000.0000.000
14A20MET0-0.063-0.02316.2910.0290.0290.0000.0000.0000.000
15A21LEU0-0.017-0.01116.1440.0070.0070.0000.0000.0000.000
16A22GLU-1-0.837-0.90318.589-0.188-0.1880.0000.0000.0000.000
17A23SER0-0.027-0.00820.3670.0130.0130.0000.0000.0000.000
18A24ASN00.014-0.01322.5350.0010.0010.0000.0000.0000.000
19A25GLU-1-0.829-0.88821.4190.0610.0610.0000.0000.0000.000
20A26GLY0-0.0080.00421.5190.0100.0100.0000.0000.0000.000
21A27ALA0-0.034-0.00122.268-0.004-0.0040.0000.0000.0000.000
22A28SER0-0.057-0.04524.3520.0080.0080.0000.0000.0000.000
23A29ARG10.8830.93523.243-0.086-0.0860.0000.0000.0000.000
24A30ILE00.0360.02917.3980.0150.0150.0000.0000.0000.000
25A31THR0-0.020-0.01919.7570.0130.0130.0000.0000.0000.000
26A32THR00.006-0.03216.204-0.008-0.0080.0000.0000.0000.000
27A33ALA00.0140.02017.6660.0240.0240.0000.0000.0000.000
28A34LYS10.8270.89019.825-0.063-0.0630.0000.0000.0000.000
29A35LEU00.0540.02512.663-0.003-0.0030.0000.0000.0000.000
30A36ALA0-0.038-0.02015.1360.0240.0240.0000.0000.0000.000
31A37LYS10.9620.98116.174-0.111-0.1110.0000.0000.0000.000
32A38GLN0-0.051-0.01615.1930.0090.0090.0000.0000.0000.000
33A39VAL0-0.028-0.01711.0010.0000.0000.0000.0000.0000.000
34A40GLY0-0.0020.02313.6390.0420.0420.0000.0000.0000.000
35A41VAL0-0.078-0.04513.0450.0470.0470.0000.0000.0000.000
36A42SER00.0400.01816.218-0.032-0.0320.0000.0000.0000.000
37A43GLU-1-0.788-0.90715.9670.3360.3360.0000.0000.0000.000
38A44ALA0-0.010-0.00415.6650.0530.0530.0000.0000.0000.000
39A45ALA0-0.010-0.00112.5590.0840.0840.0000.0000.0000.000
40A46LEU00.0230.01011.2170.2500.2500.0000.0000.0000.000
41A47TYR00.021-0.00311.0740.1330.1330.0000.0000.0000.000
42A48ARG10.8860.9669.635-0.974-0.9740.0000.0000.0000.000
43A49HIS0-0.042-0.0365.7100.5150.5150.0000.0000.0000.000
44A50PHE00.0090.0026.4550.0630.0630.0000.0000.0000.000
45A51PRO00.0100.00410.299-0.076-0.0760.0000.0000.0000.000
46A52SER00.0270.00613.470-0.074-0.0740.0000.0000.0000.000
47A53LYS10.8700.91613.752-0.117-0.1170.0000.0000.0000.000
48A54THR00.0270.02014.728-0.032-0.0320.0000.0000.0000.000
49A55ARG10.9380.94311.312-0.187-0.1870.0000.0000.0000.000
50A56MET0-0.0260.02210.208-0.051-0.0510.0000.0000.0000.000
51A57PHE00.0600.01511.204-0.096-0.0960.0000.0000.0000.000
52A58GLU-1-0.802-0.85312.758-0.015-0.0150.0000.0000.0000.000
53A59GLY00.0260.0298.949-0.058-0.0580.0000.0000.0000.000
54A60LEU0-0.019-0.0109.776-0.141-0.1410.0000.0000.0000.000
55A61ILE00.0030.00012.045-0.022-0.0220.0000.0000.0000.000
56A62GLU-1-0.852-0.92410.415-0.262-0.2620.0000.0000.0000.000
57A63PHE00.0130.01410.495-0.019-0.0190.0000.0000.0000.000
58A64ILE00.0080.00612.3420.0160.0160.0000.0000.0000.000
59A65GLU-1-0.804-0.88615.955-0.170-0.1700.0000.0000.0000.000
60A66GLU-1-0.863-0.89613.552-0.384-0.3840.0000.0000.0000.000
61A67SER0-0.049-0.03714.7100.0030.0030.0000.0000.0000.000
62A68LEU0-0.0090.00216.8250.0240.0240.0000.0000.0000.000
63A69MET00.0030.00919.8650.0180.0180.0000.0000.0000.000
64A70SER0-0.038-0.03617.3480.0270.0270.0000.0000.0000.000
65A71ARG10.8690.93015.8100.4060.4060.0000.0000.0000.000
66A72ILE00.0390.01522.2510.0180.0180.0000.0000.0000.000
67A73ASN0-0.006-0.00823.4440.0110.0110.0000.0000.0000.000
68A74ARG10.8740.92920.6900.2620.2620.0000.0000.0000.000
69A75ILE0-0.027-0.00825.4150.0120.0120.0000.0000.0000.000
70A76PHE0-0.031-0.01028.1400.0130.0130.0000.0000.0000.000
71A77ASP-1-0.848-0.91927.848-0.137-0.1370.0000.0000.0000.000
72A78GLU-1-0.860-0.92125.368-0.201-0.2010.0000.0000.0000.000
73A79GLU-1-0.828-0.90729.965-0.117-0.1170.0000.0000.0000.000
74A80LYS10.7820.86832.4110.1300.1300.0000.0000.0000.000
75A81ASP-1-0.782-0.89536.045-0.083-0.0830.0000.0000.0000.000
76A82THR0-0.023-0.02236.453-0.006-0.0060.0000.0000.0000.000
77A83LEU0-0.029-0.01336.631-0.003-0.0030.0000.0000.0000.000
78A84ASN0-0.0010.00334.310-0.004-0.0040.0000.0000.0000.000
79A85ARG10.7880.88432.3680.1030.1030.0000.0000.0000.000
80A86ILE00.0120.00731.785-0.007-0.0070.0000.0000.0000.000
81A87ARG10.8810.94132.3040.1170.1170.0000.0000.0000.000
82A88LEU0-0.009-0.00629.172-0.005-0.0050.0000.0000.0000.000
83A89VAL00.0380.01827.562-0.012-0.0120.0000.0000.0000.000
84A90MET0-0.035-0.00827.980-0.007-0.0070.0000.0000.0000.000
85A91GLN0-0.011-0.00827.1930.0000.0000.0000.0000.0000.000
86A92LEU0-0.027-0.00422.029-0.010-0.0100.0000.0000.0000.000
87A93LEU0-0.011-0.00724.299-0.014-0.0140.0000.0000.0000.000
88A94LEU0-0.010-0.00124.901-0.005-0.0050.0000.0000.0000.000
89A95ALA00.0340.01425.3040.0000.0000.0000.0000.0000.000
90A96PHE0-0.032-0.01416.720-0.014-0.0140.0000.0000.0000.000
91A97ALA00.0320.01421.080-0.013-0.0130.0000.0000.0000.000
92A98GLU-1-0.838-0.90122.897-0.128-0.1280.0000.0000.0000.000
93A99ARG10.8910.94317.5690.2940.2940.0000.0000.0000.000
94A100ASN0-0.075-0.03817.359-0.045-0.0450.0000.0000.0000.000
95A101PRO00.0640.03219.7480.0100.0100.0000.0000.0000.000
96A102GLY00.0280.00218.6630.0150.0150.0000.0000.0000.000
97A103LEU0-0.011-0.01814.1440.0150.0150.0000.0000.0000.000
98A104THR00.0250.01718.1830.0120.0120.0000.0000.0000.000
99A105ARG10.8120.91321.2330.0710.0710.0000.0000.0000.000
100A106ILE0-0.042-0.00815.8000.0190.0190.0000.0000.0000.000
101A107LEU00.0090.00020.1960.0120.0120.0000.0000.0000.000
102A108SER0-0.012-0.01122.2390.0130.0130.0000.0000.0000.000
103A109GLY00.0150.01123.7250.0110.0110.0000.0000.0000.000
104A110HIS0-0.019-0.03224.4380.0170.0170.0000.0000.0000.000
105A111ALA00.0110.00220.1840.0130.0130.0000.0000.0000.000
106A112LEU00.001-0.01018.3350.0170.0170.0000.0000.0000.000
107A113MET0-0.0050.01822.0520.0090.0090.0000.0000.0000.000
108A114PHE0-0.045-0.00322.5120.0130.0130.0000.0000.0000.000
109A115GLU-1-0.813-0.88818.9870.1210.1210.0000.0000.0000.000
110A116ASN0-0.002-0.01321.077-0.017-0.0170.0000.0000.0000.000
111A117GLU-1-0.808-0.90821.9040.0120.0120.0000.0000.0000.000
112A118ARG10.8650.91516.152-0.073-0.0730.0000.0000.0000.000
113A119LEU0-0.074-0.02516.828-0.009-0.0090.0000.0000.0000.000
114A120ARG10.8880.91920.168-0.027-0.0270.0000.0000.0000.000
115A121ASP-1-0.834-0.90623.283-0.032-0.0320.0000.0000.0000.000
116A122ARG10.7230.83214.1000.1230.1230.0000.0000.0000.000
117A123ILE0-0.0180.00019.048-0.019-0.0190.0000.0000.0000.000
118A124ASN0-0.012-0.01522.288-0.010-0.0100.0000.0000.0000.000
119A125GLN0-0.021-0.02022.974-0.010-0.0100.0000.0000.0000.000
120A126LEU0-0.0260.00019.628-0.007-0.0070.0000.0000.0000.000
121A127PHE00.0450.01123.245-0.008-0.0080.0000.0000.0000.000
122A128GLU-1-0.777-0.83426.482-0.075-0.0750.0000.0000.0000.000
123A129ARG10.8450.90119.4470.1680.1680.0000.0000.0000.000
124A130ILE00.0160.01823.549-0.004-0.0040.0000.0000.0000.000
125A131GLU-1-0.802-0.89827.288-0.068-0.0680.0000.0000.0000.000
126A132THR0-0.033-0.03929.9590.0050.0050.0000.0000.0000.000
127A133SER00.002-0.01127.864-0.001-0.0010.0000.0000.0000.000
128A134LEU0-0.029-0.01130.3560.0010.0010.0000.0000.0000.000
129A135ARG10.7510.83332.7150.0760.0760.0000.0000.0000.000
130A136GLN0-0.062-0.03031.1720.0010.0010.0000.0000.0000.000
131A137ILE00.0030.00430.8520.0040.0040.0000.0000.0000.000
132A138LEU0-0.018-0.00535.2050.0040.0040.0000.0000.0000.000
133A139ARG10.9150.93138.2670.0670.0670.0000.0000.0000.000
134A140GLU-1-0.758-0.84735.770-0.092-0.0920.0000.0000.0000.000
135A141ARG10.8460.92539.8060.0700.0700.0000.0000.0000.000
136A142LYS10.7910.88942.2500.0550.0550.0000.0000.0000.000
137A142LEU0-0.032-0.01341.3460.0030.0030.0000.0000.0000.000
138A142ARG10.8190.88735.2210.0980.0980.0000.0000.0000.000
139A142GLU-1-0.757-0.84342.331-0.072-0.0720.0000.0000.0000.000
140A142GLY00.0160.04345.6260.0030.0030.0000.0000.0000.000
141A143LYS10.8180.87945.4420.0650.0650.0000.0000.0000.000
142A148SER00.0300.01946.738-0.001-0.0010.0000.0000.0000.000
143A149PHE0-0.0020.00940.4750.0000.0000.0000.0000.0000.000
144A150PRO0-0.075-0.03545.8570.0020.0020.0000.0000.0000.000
145A151VAL00.0140.00043.7960.0020.0020.0000.0000.0000.000
146A152ASP-1-0.754-0.86243.012-0.052-0.0520.0000.0000.0000.000
147A153GLU-1-0.846-0.93739.851-0.058-0.0580.0000.0000.0000.000
148A154ASN0-0.046-0.02738.482-0.007-0.0070.0000.0000.0000.000
149A155ILE00.0350.01738.477-0.002-0.0020.0000.0000.0000.000
150A156LEU0-0.032-0.01139.087-0.001-0.0010.0000.0000.0000.000
151A157ALA00.000-0.00634.870-0.004-0.0040.0000.0000.0000.000
152A158ALA00.0600.04034.877-0.005-0.0050.0000.0000.0000.000
153A159GLN0-0.066-0.04135.9190.0010.0010.0000.0000.0000.000
154A160LEU0-0.048-0.01834.270-0.002-0.0020.0000.0000.0000.000
155A161LEU00.0310.00628.375-0.005-0.0050.0000.0000.0000.000
156A162GLY00.0910.05131.810-0.002-0.0020.0000.0000.0000.000
157A163GLN0-0.043-0.01234.1100.0060.0060.0000.0000.0000.000
158A164VAL00.0010.01028.004-0.002-0.0020.0000.0000.0000.000
159A165GLU-1-0.882-0.94328.979-0.075-0.0750.0000.0000.0000.000
160A166GLY00.0060.00030.2940.0030.0030.0000.0000.0000.000
161A167SER0-0.075-0.06030.8610.0050.0050.0000.0000.0000.000
162A168LEU0-0.004-0.00224.892-0.002-0.0020.0000.0000.0000.000
163A169ASN00.0310.00428.131-0.002-0.0020.0000.0000.0000.000
164A170ARG10.9050.96130.1240.0660.0660.0000.0000.0000.000
165A171PHE00.0300.03924.3420.0070.0070.0000.0000.0000.000
166A172VAL00.0300.01625.1110.0030.0030.0000.0000.0000.000
167A173ARG10.8960.94827.8170.0480.0480.0000.0000.0000.000
168A174SER0-0.083-0.06430.6010.0040.0040.0000.0000.0000.000
169A175ASP-1-0.841-0.91728.336-0.040-0.0400.0000.0000.0000.000
170A176PHE0-0.0070.00523.343-0.004-0.0040.0000.0000.0000.000
171A177LYS10.8850.94328.4930.0640.0640.0000.0000.0000.000
172A178TYR0-0.087-0.05031.9660.0010.0010.0000.0000.0000.000
173A179LEU00.0320.01828.849-0.001-0.0010.0000.0000.0000.000
174A180PRO00.0080.00026.7870.0050.0050.0000.0000.0000.000
175A181THR0-0.038-0.04728.6200.0040.0040.0000.0000.0000.000
176A182ALA0-0.028-0.01231.3750.0030.0030.0000.0000.0000.000
177A183ASN0-0.082-0.04134.3630.0060.0060.0000.0000.0000.000
178A184PHE00.0110.00333.5680.0020.0020.0000.0000.0000.000
179A185ASP-1-0.908-0.95435.702-0.085-0.0850.0000.0000.0000.000
180A186GLU-1-0.764-0.87838.074-0.070-0.0700.0000.0000.0000.000
181A187TYR0-0.020-0.00436.8140.0020.0020.0000.0000.0000.000
182A188TRP00.0270.00137.0430.0020.0020.0000.0000.0000.000
183A189ALA0-0.0060.01639.4270.0020.0020.0000.0000.0000.000
184A190LEU0-0.040-0.01942.7400.0030.0030.0000.0000.0000.000
185A191LEU0-0.0050.00238.9570.0030.0030.0000.0000.0000.000
186A192SER0-0.051-0.05840.9760.0030.0030.0000.0000.0000.000
187A193ALA00.0220.01642.8280.0010.0010.0000.0000.0000.000
188A194GLN00.0110.00546.3080.0030.0030.0000.0000.0000.000
189A195ILE0-0.027-0.00840.7990.0020.0020.0000.0000.0000.000
190A196LYS10.9320.98645.0770.0450.0450.0000.0000.0000.000