FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: 1N77Z

Calculation Name: 2OL5-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2OL5

Chain ID: A

ChEMBL ID:

UniProt ID: Q5L206

Base Structure: X-ray

Registration Date: 2023-09-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 189
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1978059.233106
FMO2-HF: Nuclear repulsion 1900775.473257
FMO2-HF: Total energy -77283.759849
FMO2-MP2: Total energy -77506.775273


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:11:ASP)


Summations of interaction energy for fragment #1(A:11:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-8.9199999999999-6.23699999999990.035-1.389-1.330.006
Interaction energy analysis for fragmet #1(A:11:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.973 / q_NPA : -0.998
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A13ASP-1-0.874-0.9603.86520.74222.9910.021-1.282-0.9880.006
4A14VAL00.0080.0065.617-3.807-3.8070.0000.0000.0000.000
5A15ALA0-0.019-0.0154.032-3.689-3.627-0.001-0.018-0.0430.000
6A16TYR00.007-0.0165.908-2.461-2.4610.0000.0000.0000.000
7A17GLN0-0.014-0.0019.393-0.541-0.5410.0000.0000.0000.000
8A18VAL0-0.050-0.0247.837-1.942-1.9420.0000.0000.0000.000
9A19ILE00.0110.0119.453-1.655-1.6550.0000.0000.0000.000
10A20GLU-1-0.785-0.88812.01417.89217.8920.0000.0000.0000.000
11A21GLU-1-0.893-0.92613.78217.90517.9050.0000.0000.0000.000
12A22ASN0-0.062-0.03212.754-1.713-1.7130.0000.0000.0000.000
13A23SER00.0190.02815.609-0.334-0.3340.0000.0000.0000.000
14A24PHE0-0.0090.01117.066-0.450-0.4500.0000.0000.0000.000
15A25ALA00.0370.02116.3290.3180.3180.0000.0000.0000.000
16A26THR0-0.025-0.02817.063-0.628-0.6280.0000.0000.0000.000
17A27LEU0-0.0050.00717.5300.7780.7780.0000.0000.0000.000
18A28VAL00.009-0.00118.365-0.703-0.7030.0000.0000.0000.000
19A29SER0-0.034-0.02319.8870.4300.4300.0000.0000.0000.000
20A30MET0-0.015-0.00322.496-0.041-0.0410.0000.0000.0000.000
21A31HIS0-0.012-0.00325.521-0.201-0.2010.0000.0000.0000.000
22A32GLN0-0.043-0.03828.820-0.307-0.3070.0000.0000.0000.000
23A33ARG10.8850.93729.630-9.358-9.3580.0000.0000.0000.000
24A34GLU-1-0.914-0.93729.0989.2579.2570.0000.0000.0000.000
25A35LEU0-0.024-0.02222.2430.2260.2260.0000.0000.0000.000
26A36PHE00.0260.00924.759-0.285-0.2850.0000.0000.0000.000
27A37ALA0-0.010-0.01722.0780.5360.5360.0000.0000.0000.000
28A38THR00.0120.01022.915-0.650-0.6500.0000.0000.0000.000
29A39HIS0-0.0010.01721.8380.8590.8590.0000.0000.0000.000
30A40LEU0-0.023-0.01320.871-0.568-0.5680.0000.0000.0000.000
31A41PRO00.0160.01920.7160.5880.5880.0000.0000.0000.000
32A42LEU0-0.044-0.02117.074-0.206-0.2060.0000.0000.0000.000
33A43LEU00.002-0.00317.8860.6340.6340.0000.0000.0000.000
34A44LEU0-0.030-0.00812.554-0.116-0.1160.0000.0000.0000.000
35A45ASP-1-0.733-0.85916.97114.65314.6530.0000.0000.0000.000
36A46ARG10.8880.93918.076-11.490-11.4900.0000.0000.0000.000
37A47GLU-1-0.924-0.95418.56215.29015.2900.0000.0000.0000.000
38A48LYS10.7530.86713.312-18.561-18.5610.0000.0000.0000.000
39A49THR0-0.0130.00014.0461.0511.0510.0000.0000.0000.000
40A50CYS0-0.080-0.05316.374-0.245-0.2450.0000.0000.0000.000
41A51LEU00.0010.00013.9810.2630.2630.0000.0000.0000.000
42A52TYR00.0450.01418.034-0.644-0.6440.0000.0000.0000.000
43A53GLY00.0330.00720.9940.4370.4370.0000.0000.0000.000
44A54HIS0-0.017-0.02023.319-0.487-0.4870.0000.0000.0000.000
45A55PHE00.0200.02024.3990.1160.1160.0000.0000.0000.000
46A56ALA00.0670.02928.485-0.196-0.1960.0000.0000.0000.000
47A57ARG10.8420.91032.035-8.245-8.2450.0000.0000.0000.000
48A58SER0-0.011-0.00334.3330.0130.0130.0000.0000.0000.000
49A59ASN0-0.017-0.00727.784-0.135-0.1350.0000.0000.0000.000
50A60PRO00.0370.00731.6710.0740.0740.0000.0000.0000.000
51A61GLN00.0240.01823.216-0.118-0.1180.0000.0000.0000.000
52A62TRP00.006-0.02128.2430.1370.1370.0000.0000.0000.000
53A63ASN0-0.033-0.01929.2480.0000.0000.0000.0000.0000.000
54A64ASP-1-0.801-0.88729.7309.5199.5190.0000.0000.0000.000
55A65ILE00.0010.03022.8790.2870.2870.0000.0000.0000.000
56A66GLN00.0250.01624.6680.5420.5420.0000.0000.0000.000
57A67HIS00.0060.00525.9380.1050.1050.0000.0000.0000.000
58A68GLN0-0.047-0.02623.4860.6450.6450.0000.0000.0000.000
59A69THR0-0.075-0.04917.4060.3410.3410.0000.0000.0000.000
60A70VAL00.0050.01718.2270.0280.0280.0000.0000.0000.000
61A71LEU0-0.026-0.02112.9730.8870.8870.0000.0000.0000.000
62A72ALA00.0250.02614.687-0.744-0.7440.0000.0000.0000.000
63A73ILE0-0.041-0.02712.9181.4411.4410.0000.0000.0000.000
64A74PHE00.0410.02011.222-0.816-0.8160.0000.0000.0000.000
65A75HIS0-0.018-0.02711.7821.8991.8990.0000.0000.0000.000
66A76GLY00.0400.02512.199-0.412-0.4120.0000.0000.0000.000
67A77PRO0-0.026-0.00412.771-0.907-0.9070.0000.0000.0000.000
68A78HIS00.015-0.02514.1541.1491.1490.0000.0000.0000.000
69A79CYS00.0100.01516.427-0.522-0.5220.0000.0000.0000.000
70A80TYR00.0310.01818.5160.5070.5070.0000.0000.0000.000
71A81ILE0-0.025-0.02017.6760.0550.0550.0000.0000.0000.000
72A82SER00.0640.03521.102-0.203-0.2030.0000.0000.0000.000
73A83PRO00.0000.00224.5310.1790.1790.0000.0000.0000.000
74A84SER0-0.048-0.04025.617-0.132-0.1320.0000.0000.0000.000
75A85TRP00.0440.02321.688-0.050-0.0500.0000.0000.0000.000
76A86TYR0-0.013-0.00720.8550.3470.3470.0000.0000.0000.000
77A87GLU-1-0.811-0.90326.59711.14611.1460.0000.0000.0000.000
78A88THR0-0.042-0.01527.768-0.232-0.2320.0000.0000.0000.000
79A89ASN00.0440.01328.8290.3200.3200.0000.0000.0000.000
80A90GLN00.0120.01828.2740.0770.0770.0000.0000.0000.000
81A91ALA0-0.040-0.02024.7920.5230.5230.0000.0000.0000.000
82A92VAL00.0210.00422.088-0.362-0.3620.0000.0000.0000.000
83A93PRO0-0.0100.01422.2920.4270.4270.0000.0000.0000.000
84A94THR0-0.014-0.01417.0920.4240.4240.0000.0000.0000.000
85A95TRP00.0460.01817.306-0.540-0.5400.0000.0000.0000.000
86A96ASN0-0.009-0.01713.9561.3661.3660.0000.0000.0000.000
87A97TYR00.025-0.00910.239-1.282-1.2820.0000.0000.0000.000
88A98VAL0-0.0100.0027.7801.9011.9010.0000.0000.0000.000
89A99ALA0-0.0050.0118.559-1.801-1.8010.0000.0000.0000.000
90A100VAL0-0.0100.0005.9393.0053.0050.0000.0000.0000.000
91A101HIS00.0170.0248.028-1.342-1.3420.0000.0000.0000.000
92A102VAL00.0640.0329.2421.6341.6340.0000.0000.0000.000
93A103TYR0-0.023-0.02310.387-2.045-2.0450.0000.0000.0000.000
94A104GLY00.0810.03113.9520.7040.7040.0000.0000.0000.000
95A105ASN0-0.0330.00116.9430.0020.0020.0000.0000.0000.000
96A106VAL0-0.001-0.00120.7840.1870.1870.0000.0000.0000.000
97A107GLU-1-0.898-0.94923.03411.23311.2330.0000.0000.0000.000
98A108LEU0-0.044-0.03425.9470.1340.1340.0000.0000.0000.000
99A109ILE0-0.036-0.01125.692-0.144-0.1440.0000.0000.0000.000
100A110ASN00.0330.00429.840-0.003-0.0030.0000.0000.0000.000
101A111ASP-1-0.824-0.90532.6928.4838.4830.0000.0000.0000.000
102A112GLN0-0.031-0.03933.2140.0770.0770.0000.0000.0000.000
103A113GLY00.0230.02734.1430.0150.0150.0000.0000.0000.000
104A114GLU-1-0.808-0.90427.61210.75010.7500.0000.0000.0000.000
105A115VAL0-0.0340.00029.2720.2970.2970.0000.0000.0000.000
106A116MET00.0110.00730.5580.1170.1170.0000.0000.0000.000
107A117GLN0-0.037-0.02427.958-0.172-0.1720.0000.0000.0000.000
108A118SER0-0.052-0.03925.7960.2640.2640.0000.0000.0000.000
109A119LEU0-0.001-0.01526.5060.2230.2230.0000.0000.0000.000
110A120HIS0-0.038-0.02428.609-0.217-0.2170.0000.0000.0000.000
111A121ASP-1-0.812-0.90324.26211.41611.4160.0000.0000.0000.000
112A122MET0-0.052-0.01224.5980.4240.4240.0000.0000.0000.000
113A123VAL0-0.013-0.00625.6320.0570.0570.0000.0000.0000.000
114A124GLU-1-0.925-0.96626.71910.01810.0180.0000.0000.0000.000
115A125LYS10.7970.91218.245-14.249-14.2490.0000.0000.0000.000
116A126TYR0-0.072-0.06720.4740.3510.3510.0000.0000.0000.000
117A127GLU-1-0.802-0.86726.0838.8888.8880.0000.0000.0000.000
118A128ALA0-0.0180.00228.6830.2520.2520.0000.0000.0000.000
119A129PRO00.016-0.01828.668-0.246-0.2460.0000.0000.0000.000
120A130GLY0-0.0230.00131.299-0.142-0.1420.0000.0000.0000.000
121A131SER0-0.083-0.06233.561-0.426-0.4260.0000.0000.0000.000
122A132ARG10.8930.92635.378-7.574-7.5740.0000.0000.0000.000
123A133TYR0-0.064-0.02333.532-0.160-0.1600.0000.0000.0000.000
124A134GLN00.012-0.00934.335-0.002-0.0020.0000.0000.0000.000
125A135LEU0-0.0140.00034.9360.1020.1020.0000.0000.0000.000
126A136SER0-0.014-0.00237.679-0.175-0.1750.0000.0000.0000.000
127A137GLU-1-0.780-0.89237.9847.6827.6820.0000.0000.0000.000
128A138VAL0-0.052-0.02241.984-0.155-0.1550.0000.0000.0000.000
129A139ASP-1-0.851-0.92644.6156.3686.3680.0000.0000.0000.000
130A140ALA0-0.014-0.01345.8310.0780.0780.0000.0000.0000.000
131A141GLY00.0000.01145.695-0.015-0.0150.0000.0000.0000.000
132A142MET0-0.043-0.00139.4560.1740.1740.0000.0000.0000.000
133A143LEU00.0880.03837.9600.1120.1120.0000.0000.0000.000
134A144SER0-0.042-0.03939.0350.1280.1280.0000.0000.0000.000
135A145GLY0-0.026-0.02740.4290.0270.0270.0000.0000.0000.000
136A146MET00.0310.02335.2380.1520.1520.0000.0000.0000.000
137A147ASN00.0200.02035.7840.2970.2970.0000.0000.0000.000
138A148LYS10.8550.92436.654-6.838-6.8380.0000.0000.0000.000
139A149GLY00.0230.02836.832-0.059-0.0590.0000.0000.0000.000
140A150ILE0-0.038-0.00830.8410.1160.1160.0000.0000.0000.000
141A151GLN0-0.038-0.02629.488-0.425-0.4250.0000.0000.0000.000
142A152ALA00.0650.03627.8560.3130.3130.0000.0000.0000.000
143A153PHE0-0.029-0.00621.325-0.198-0.1980.0000.0000.0000.000
144A154LYS10.8840.93422.105-10.910-10.9100.0000.0000.0000.000
145A155ILE0-0.036-0.01517.738-0.257-0.2570.0000.0000.0000.000
146A156ILE00.0440.02918.1780.7250.7250.0000.0000.0000.000
147A157ILE0-0.022-0.00212.0430.0760.0760.0000.0000.0000.000
148A158LYS10.8410.91014.892-14.618-14.6180.0000.0000.0000.000
149A159ARG10.8240.8959.936-20.237-20.2370.0000.0000.0000.000
150A160ILE00.0550.0316.044-1.462-1.4620.0000.0000.0000.000
151A161GLU-1-0.761-0.8395.37526.01226.0120.0000.0000.0000.000
152A162GLY00.0640.0303.283-2.801-2.5650.016-0.083-0.1700.000
153A163LYS10.7450.8554.128-24.011-23.875-0.001-0.006-0.1290.000
154A164ALA00.0600.0255.639-1.975-1.9750.0000.0000.0000.000
155A165LYS10.8420.9617.197-18.970-18.9700.0000.0000.0000.000
156A166LEU00.0550.0069.313-1.444-1.4440.0000.0000.0000.000
157A167SER0-0.002-0.00212.146-0.493-0.4930.0000.0000.0000.000
158A168GLN00.0830.0357.810-3.739-3.7390.0000.0000.0000.000
159A169ASN0-0.025-0.00412.4761.0411.0410.0000.0000.0000.000
160A170HIS00.0100.02014.107-1.537-1.5370.0000.0000.0000.000
161A171PRO00.0190.00416.7670.6750.6750.0000.0000.0000.000
162A172ALA00.0820.03618.039-0.171-0.1710.0000.0000.0000.000
163A173HIS00.0720.04318.9480.3310.3310.0000.0000.0000.000
164A174ARG10.8980.95420.961-13.568-13.5680.0000.0000.0000.000
165A175GLN0-0.012-0.02414.3490.2910.2910.0000.0000.0000.000
166A176GLU-1-0.843-0.91618.99113.20213.2020.0000.0000.0000.000
167A177ARG10.7590.87021.454-11.497-11.4970.0000.0000.0000.000
168A178ILE0-0.029-0.00418.755-0.300-0.3000.0000.0000.0000.000
169A179ILE0-0.021-0.00617.307-0.236-0.2360.0000.0000.0000.000
170A180LYS10.8950.92920.970-12.796-12.7960.0000.0000.0000.000
171A181GLN0-0.0310.00124.509-0.590-0.5900.0000.0000.0000.000
172A182LEU00.012-0.01119.192-0.291-0.2910.0000.0000.0000.000
173A183GLU-1-0.861-0.92222.84612.80012.8000.0000.0000.0000.000
174A184GLN0-0.040-0.02424.278-0.467-0.4670.0000.0000.0000.000
175A185MET0-0.0130.01925.317-0.257-0.2570.0000.0000.0000.000
176A186PRO0-0.038-0.00726.8680.2840.2840.0000.0000.0000.000
177A187PHE00.0150.00025.029-0.255-0.2550.0000.0000.0000.000
178A188GLU-1-0.846-0.93022.05112.49212.4920.0000.0000.0000.000
179A189ASN0-0.044-0.01019.0410.9330.9330.0000.0000.0000.000
180A190GLU-1-0.822-0.93418.62513.72613.7260.0000.0000.0000.000
181A191LYS10.9220.96819.819-10.745-10.7450.0000.0000.0000.000
182A192ARG10.8550.92415.607-15.828-15.8280.0000.0000.0000.000
183A193ILE0-0.010-0.00513.8711.2031.2030.0000.0000.0000.000
184A194ALA00.0210.00515.7470.9140.9140.0000.0000.0000.000
185A195SER0-0.059-0.04317.4420.1650.1650.0000.0000.0000.000
186A196LEU0-0.029-0.00710.9780.7470.7470.0000.0000.0000.000
187A197MET0-0.036-0.02312.6170.9220.9220.0000.0000.0000.000
188A198LYS10.8260.91114.415-14.351-14.3510.0000.0000.0000.000
189A199LYS10.8760.95210.477-19.681-19.6810.0000.0000.0000.000