FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 1V62Z

Calculation Name: 4BTS-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4BTS

Chain ID: A

ChEMBL ID:

UniProt ID: P06147

Base Structure: X-ray

Registration Date: 2025-10-06

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 207
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2245809.645387
FMO2-HF: Nuclear repulsion 2162628.737402
FMO2-HF: Total energy -83180.907986
FMO2-MP2: Total energy -83426.996267


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:GLY)


Summations of interaction energy for fragment #1(A:2:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
473.218474.8730.013-0.891-0.776-0.003
Interaction energy analysis for fragmet #1(A:2:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.896 / q_NPA : 0.941
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4SER0-0.070-0.0753.323-12.496-11.2180.016-0.775-0.519-0.003
23A24LYS10.9580.9783.91055.74755.9370.000-0.071-0.1190.000
28A29LYS10.8960.9604.07235.27435.353-0.001-0.018-0.0600.000
29A30GLY00.0300.0174.5829.5439.616-0.001-0.007-0.0640.000
30A31ARG10.8270.8914.33423.31023.345-0.001-0.020-0.0140.000
4A5ARG10.9080.9475.94033.33833.3380.0000.0000.0000.000
5A6ASP-1-0.800-0.8469.209-28.966-28.9660.0000.0000.0000.000
6A7SER00.0410.00811.149-0.325-0.3250.0000.0000.0000.000
7A8LYS10.8880.94512.96619.05119.0510.0000.0000.0000.000
8A9HIS0-0.042-0.02110.9651.8001.8000.0000.0000.0000.000
9A10LYS10.9570.98313.18018.89618.8960.0000.0000.0000.000
10A11ARG10.9140.96016.49114.52114.5210.0000.0000.0000.000
11A12ARG10.9400.96520.17613.34313.3430.0000.0000.0000.000
12A13ALA00.0470.00722.5280.1610.1610.0000.0000.0000.000
13A14THR00.0640.04325.7080.0230.0230.0000.0000.0000.000
14A15GLY00.0630.05224.7180.2550.2550.0000.0000.0000.000
15A16GLY00.0140.00924.053-0.389-0.3890.0000.0000.0000.000
16A17ARG10.9820.97518.71914.44314.4430.0000.0000.0000.000
17A18MET00.0290.02717.6660.9060.9060.0000.0000.0000.000
18A19PRO00.0050.01018.189-0.667-0.6670.0000.0000.0000.000
19A20VAL0-0.024-0.03212.573-0.538-0.5380.0000.0000.0000.000
20A21HIS00.1040.05815.930-0.786-0.7860.0000.0000.0000.000
21A22ARG10.8290.91312.33022.80622.8060.0000.0000.0000.000
22A23LYS11.0431.0178.96224.91524.9150.0000.0000.0000.000
24A25ARG10.9650.9797.61623.14623.1460.0000.0000.0000.000
25A26ALA00.0400.0146.257-3.888-3.8880.0000.0000.0000.000
26A27PHE00.011-0.0087.338-0.738-0.7380.0000.0000.0000.000
27A28GLU-1-0.775-0.8637.778-28.485-28.4850.0000.0000.0000.000
31A32PRO00.0680.0345.2292.5112.5110.0000.0000.0000.000
32A33ILE00.0290.0198.0001.4251.4250.0000.0000.0000.000
33A34SER0-0.012-0.00111.6100.0920.0920.0000.0000.0000.000
34A35MET00.0010.00614.4601.1401.1400.0000.0000.0000.000
35A36THR0-0.011-0.00817.2380.6400.6400.0000.0000.0000.000
36A37LYS10.8430.91319.92015.20615.2060.0000.0000.0000.000
37A38LEU00.0290.02323.1550.0650.0650.0000.0000.0000.000
38A39THR0-0.037-0.04325.9790.1710.1710.0000.0000.0000.000
39A40THR0-0.059-0.01228.4790.1990.1990.0000.0000.0000.000
40A41GLN00.0720.03231.9990.0710.0710.0000.0000.0000.000
41A42SER0-0.0210.00728.2900.1780.1780.0000.0000.0000.000
42A43THR00.0470.00231.157-0.205-0.2050.0000.0000.0000.000
43A44THR00.0590.03729.9810.0320.0320.0000.0000.0000.000
44A45ILE0-0.073-0.02425.775-0.307-0.3070.0000.0000.0000.000
45A46THR00.1130.05329.4600.0480.0480.0000.0000.0000.000
46A47GLU-1-0.758-0.84924.552-12.969-12.9690.0000.0000.0000.000
47A48LYS10.9000.95626.4379.4909.4900.0000.0000.0000.000
48A49ARG10.9911.00425.64811.47611.4760.0000.0000.0000.000
49A50ARG10.7960.87120.13314.00514.0050.0000.0000.0000.000
50A51ILE00.0200.00220.268-0.552-0.5520.0000.0000.0000.000
51A52ARG10.9610.97715.83016.82016.8200.0000.0000.0000.000
52A53PRO00.0650.04817.214-0.323-0.3230.0000.0000.0000.000
53A54VAL0-0.049-0.03411.099-1.520-1.5200.0000.0000.0000.000
54A55ARG11.0391.02813.21921.19621.1960.0000.0000.0000.000
55A56VAL0-0.047-0.02311.989-3.487-3.4870.0000.0000.0000.000
56A57ARG10.9330.94912.26721.69721.6970.0000.0000.0000.000
57A58GLY00.0740.02014.0100.6540.6540.0000.0000.0000.000
58A59GLY0-0.0050.01216.3280.7220.7220.0000.0000.0000.000
59A60HIS00.0770.05717.9000.1120.1120.0000.0000.0000.000
60A61LEU00.0190.00416.818-1.520-1.5200.0000.0000.0000.000
61A62LYS10.8600.93713.90721.04321.0430.0000.0000.0000.000
62A63PHE00.0680.02316.294-0.835-0.8350.0000.0000.0000.000
63A64ARG10.8090.91310.40324.70624.7060.0000.0000.0000.000
64A65ALA00.0770.03616.9190.4200.4200.0000.0000.0000.000
65A66LEU0-0.059-0.03115.311-0.946-0.9460.0000.0000.0000.000
66A67ARG10.8840.95319.13413.23013.2300.0000.0000.0000.000
67A68LEU00.0180.00222.9490.0230.0230.0000.0000.0000.000
68A69CYS00.0140.01825.7340.0120.0120.0000.0000.0000.000
69A70GLU-1-0.817-0.90929.181-9.352-9.3520.0000.0000.0000.000
70A71GLY0-0.037-0.01628.909-0.534-0.5340.0000.0000.0000.000
71A72ASN0-0.016-0.00530.4420.5970.5970.0000.0000.0000.000
72A73PHE00.005-0.00330.163-0.338-0.3380.0000.0000.0000.000
73A74SER00.0310.01434.5100.2380.2380.0000.0000.0000.000
74A75TRP0-0.028-0.01736.914-0.116-0.1160.0000.0000.0000.000
75A76GLY00.0170.00640.1270.0410.0410.0000.0000.0000.000
76A77SER0-0.028-0.05040.6560.0910.0910.0000.0000.0000.000
77A78GLU-1-0.779-0.85543.978-6.557-6.5570.0000.0000.0000.000
78A79ASN0-0.037-0.00341.363-0.117-0.1170.0000.0000.0000.000
79A80ILE0-0.034-0.00141.908-0.006-0.0060.0000.0000.0000.000
80A81THR00.002-0.00535.654-0.229-0.2290.0000.0000.0000.000
81A82ARG10.8860.95037.4417.7407.7400.0000.0000.0000.000
82A83LYS10.9000.95232.2269.3309.3300.0000.0000.0000.000
83A84THR00.0240.00634.4330.3360.3360.0000.0000.0000.000
84A85LYS10.9200.98133.4807.7657.7650.0000.0000.0000.000
85A86ILE0-0.038-0.02328.0740.1150.1150.0000.0000.0000.000
86A87LEU0-0.011-0.01832.157-0.190-0.1900.0000.0000.0000.000
87A88ASP-1-0.784-0.88632.048-9.716-9.7160.0000.0000.0000.000
88A89VAL0-0.040-0.01627.192-0.058-0.0580.0000.0000.0000.000
89A90LYS10.8600.93730.4648.9758.9750.0000.0000.0000.000
90A91TYR00.0380.00131.0350.0920.0920.0000.0000.0000.000
91A92ASN00.023-0.00423.669-0.350-0.3500.0000.0000.0000.000
92A93ALA00.0290.02027.5500.0570.0570.0000.0000.0000.000
93A94THR0-0.0420.00321.072-0.137-0.1370.0000.0000.0000.000
94A95ASN00.0730.01121.5410.4290.4290.0000.0000.0000.000
95A96ASN00.0780.04124.8170.0160.0160.0000.0000.0000.000
96A97GLU-1-0.787-0.88422.902-12.304-12.3040.0000.0000.0000.000
97A98LEU0-0.055-0.00919.795-0.277-0.2770.0000.0000.0000.000
98A99VAL0-0.0130.00523.7280.0280.0280.0000.0000.0000.000
99A100ARG10.9160.95526.61811.47911.4790.0000.0000.0000.000
100A101THR0-0.037-0.03222.252-0.120-0.1200.0000.0000.0000.000
101A102LYS10.9040.94023.9789.7599.7590.0000.0000.0000.000
102A103THR0-0.015-0.01619.904-0.489-0.4890.0000.0000.0000.000
103A104LEU0-0.0220.00622.4680.3410.3410.0000.0000.0000.000
104A105VAL0-0.042-0.03719.614-0.948-0.9480.0000.0000.0000.000
105A106LYS10.9420.97922.18812.79412.7940.0000.0000.0000.000
106A107ASN00.008-0.00824.228-0.026-0.0260.0000.0000.0000.000
107A108SER0-0.046-0.01424.911-0.049-0.0490.0000.0000.0000.000
108A109ILE00.0030.00327.3950.1580.1580.0000.0000.0000.000
109A110VAL0-0.021-0.02128.996-0.161-0.1610.0000.0000.0000.000
110A111GLU-1-0.792-0.88331.751-8.363-8.3630.0000.0000.0000.000
111A112ILE0-0.033-0.01233.240-0.249-0.2490.0000.0000.0000.000
112A113ASP-1-0.805-0.90136.598-7.654-7.6540.0000.0000.0000.000
113A114SER00.0280.00239.384-0.011-0.0110.0000.0000.0000.000
114A115THR00.0040.00542.2990.1420.1420.0000.0000.0000.000
115A116PRO00.0350.00839.6490.1380.1380.0000.0000.0000.000
116A117PHE0-0.029-0.01937.7830.0970.0970.0000.0000.0000.000
117A118ARG10.8550.91043.7836.6976.6970.0000.0000.0000.000
118A119GLU-1-0.940-0.96646.077-6.775-6.7750.0000.0000.0000.000
119A120TRP00.004-0.00545.7810.1050.1050.0000.0000.0000.000
120A121TYR00.023-0.01847.6490.1480.1480.0000.0000.0000.000
121A122LYS10.9260.96149.4746.3286.3280.0000.0000.0000.000
122A123LEU0-0.045-0.01649.6240.1540.1540.0000.0000.0000.000
123A124HIS0-0.057-0.02750.4750.2230.2230.0000.0000.0000.000
124A125TYR0-0.033-0.07049.6560.1760.1760.0000.0000.0000.000
125A126GLY0-0.0160.00654.5240.1270.1270.0000.0000.0000.000
126A127ILE00.0130.00453.2910.0900.0900.0000.0000.0000.000
127A128ASP-1-0.768-0.86751.772-6.425-6.4250.0000.0000.0000.000
128A129LEU00.0010.00048.1550.0560.0560.0000.0000.0000.000
129A130GLY0-0.0050.00649.470-0.077-0.0770.0000.0000.0000.000
130A131LEU0-0.046-0.01150.2720.0090.0090.0000.0000.0000.000
131A132LYS10.9620.97252.8676.0676.0670.0000.0000.0000.000
132A133LYS10.9790.98655.6495.3305.3300.0000.0000.0000.000
133A134ASP-1-0.853-0.93558.048-5.329-5.3290.0000.0000.0000.000
134A135ARG10.8130.89153.5095.9385.9380.0000.0000.0000.000
135A136THR0-0.010-0.00556.676-0.109-0.1090.0000.0000.0000.000
136A137VAL0-0.023-0.01456.1720.0700.0700.0000.0000.0000.000
137A138LEU0-0.017-0.00959.329-0.023-0.0230.0000.0000.0000.000
138A139GLY00.0090.00661.6080.0430.0430.0000.0000.0000.000
139A140ASN00.0570.01663.636-0.029-0.0290.0000.0000.0000.000
140A141LYS10.9500.98766.7854.7644.7640.0000.0000.0000.000
141A142GLU-1-0.732-0.86367.364-4.595-4.5950.0000.0000.0000.000
142A143LYS10.9040.92869.2904.4184.4180.0000.0000.0000.000
143A144SER00.0330.03865.383-0.031-0.0310.0000.0000.0000.000
144A145ARG11.0261.01160.0855.2145.2140.0000.0000.0000.000
145A146HIS0-0.039-0.04760.809-0.109-0.1090.0000.0000.0000.000
146A147VAL00.0740.04860.500-0.124-0.1240.0000.0000.0000.000
147A148GLN00.011-0.01362.021-0.095-0.0950.0000.0000.0000.000
148A149LYS10.8790.95656.9125.6075.6070.0000.0000.0000.000
149A150ARG10.8300.91455.3815.6685.6680.0000.0000.0000.000
150A151VAL00.0500.02658.376-0.055-0.0550.0000.0000.0000.000
151A152LYS10.8800.93360.3475.0605.0600.0000.0000.0000.000
152A153ARG10.8870.96954.0475.9095.9090.0000.0000.0000.000
153A154THR00.0520.01156.223-0.083-0.0830.0000.0000.0000.000
154A155LYS10.9290.96857.3035.0335.0330.0000.0000.0000.000
155A156ALA00.0140.02355.9550.0510.0510.0000.0000.0000.000
156A157GLN0-0.051-0.00850.166-0.101-0.1010.0000.0000.0000.000
157A158ALA00.0300.01153.0950.1050.1050.0000.0000.0000.000
158A159LEU0-0.0080.00847.907-0.127-0.1270.0000.0000.0000.000
159A160GLU-1-0.804-0.90945.369-6.966-6.9660.0000.0000.0000.000
160A161LYS11.0221.00048.7325.9005.9000.0000.0000.0000.000
161A162ASN00.0200.00844.5240.0380.0380.0000.0000.0000.000
162A163ILE00.0160.01643.681-0.157-0.1570.0000.0000.0000.000
163A164GLU-1-0.787-0.86845.838-6.155-6.1550.0000.0000.0000.000
164A165GLU-1-0.931-0.97047.667-6.520-6.5200.0000.0000.0000.000
165A166GLN0-0.029-0.00940.928-0.262-0.2620.0000.0000.0000.000
166A167PHE0-0.011-0.01444.310-0.104-0.1040.0000.0000.0000.000
167A168VAL0-0.020-0.00246.2680.0200.0200.0000.0000.0000.000
168A169SER0-0.076-0.04544.7600.0470.0470.0000.0000.0000.000
169A170GLN0-0.0170.00344.097-0.116-0.1160.0000.0000.0000.000
170A171ARG10.8090.88837.6347.9787.9780.0000.0000.0000.000
171A172ILE00.0170.01939.2800.0950.0950.0000.0000.0000.000
172A173LEU0-0.017-0.00735.746-0.314-0.3140.0000.0000.0000.000
173A174ALA00.0400.01433.9240.1510.1510.0000.0000.0000.000
174A175CYS0-0.0040.03430.428-0.467-0.4670.0000.0000.0000.000
175A176ILE0-0.0410.00525.050-0.010-0.0100.0000.0000.0000.000
176A177THR00.060-0.00627.371-0.265-0.2650.0000.0000.0000.000
177A178SER0-0.036-0.01824.107-0.449-0.4490.0000.0000.0000.000
178A179ARG10.9790.97718.30416.28616.2860.0000.0000.0000.000
179A180PRO00.0860.04820.293-0.594-0.5940.0000.0000.0000.000
180A181GLY00.0520.02516.249-0.318-0.3180.0000.0000.0000.000
181A182GLN0-0.160-0.09213.961-1.648-1.6480.0000.0000.0000.000
182A183SER00.0940.03317.512-0.383-0.3830.0000.0000.0000.000
183A184GLY00.0010.02219.9670.5010.5010.0000.0000.0000.000
184A185ARG10.9120.96021.40212.05912.0590.0000.0000.0000.000
185A186ALA00.0130.00024.079-0.477-0.4770.0000.0000.0000.000
186A187ASP-1-0.777-0.90126.515-10.715-10.7150.0000.0000.0000.000
187A188GLY0-0.017-0.02628.397-0.451-0.4510.0000.0000.0000.000
188A189TYR0-0.046-0.03031.0550.0110.0110.0000.0000.0000.000
189A190ILE00.0260.00334.504-0.192-0.1920.0000.0000.0000.000
190A191LEU0-0.061-0.02734.343-0.002-0.0020.0000.0000.0000.000
191A192GLU-1-0.698-0.83537.999-7.470-7.4700.0000.0000.0000.000
192A193GLY00.0490.01641.054-0.127-0.1270.0000.0000.0000.000
193A194LYS10.8780.91841.5087.0707.0700.0000.0000.0000.000
194A195GLU-1-0.818-0.88834.934-9.263-9.2630.0000.0000.0000.000
195A196LEU0-0.013-0.00138.526-0.129-0.1290.0000.0000.0000.000
196A197GLU-1-0.764-0.85740.732-7.080-7.0800.0000.0000.0000.000
197A198PHE0-0.021-0.00734.350-0.006-0.0060.0000.0000.0000.000
198A199TYR00.016-0.01332.444-0.166-0.1660.0000.0000.0000.000
199A200ILE0-0.0010.01037.409-0.101-0.1010.0000.0000.0000.000
200A201ARG10.9070.93640.4867.2427.2420.0000.0000.0000.000
201A202LYS10.9240.98235.4198.8208.8200.0000.0000.0000.000
202A203LEU0-0.047-0.02735.211-0.084-0.0840.0000.0000.0000.000
203A204GLN0-0.024-0.01137.7790.1080.1080.0000.0000.0000.000
204A205SER0-0.002-0.01939.5930.0090.0090.0000.0000.0000.000
205A206LYS10.8790.94731.8389.7339.7330.0000.0000.0000.000
206A207LYS10.8560.92237.9507.9747.9740.0000.0000.0000.000
207A208LYS00.0830.08140.820-0.463-0.4630.0000.0000.0000.000