FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 1VGQZ

Calculation Name: 2C0G-A-Xray549

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2C0G

Chain ID: A

ChEMBL ID:

UniProt ID: O44342

Base Structure: X-ray

Registration Date: 2025-10-11

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement ac.sh, 23 2024 Oct
Water No
Procedure Manual calculation
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 227
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2687308.972793
FMO2-HF: Nuclear repulsion 2596922.560779
FMO2-HF: Total energy -90386.412014
FMO2-MP2: Total energy -90654.082643


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1024:CYS)


Summations of interaction energy for fragment #1(A:1024:CYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-98.966-85.71319.333-11.884-20.704-0.009
Interaction energy analysis for fragmet #1(A:1024:CYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.809 / q_NPA : 0.921
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
5A1029ASP-1-0.859-0.8913.851-46.729-44.925-0.014-0.664-1.1260.003
24A1048LYS10.7760.8964.94542.16042.336-0.001-0.017-0.1580.000
35A1059HIS00.0830.0422.8772.0204.1240.419-0.835-1.688-0.008
36A1060GLU-1-0.898-0.9484.701-47.675-47.370-0.001-0.025-0.2790.000
38A1062PHE00.0460.0083.193-0.1691.2610.627-0.417-1.641-0.004
39A1063THR0-0.027-0.0102.138-11.847-10.1764.173-1.850-3.994-0.015
40A1064ALA00.0330.0093.6891.0771.0590.0070.178-0.1670.000
42A1066SER00.0230.0162.946-5.502-3.4162.613-1.730-2.969-0.001
43A1067LYS10.7950.8843.29151.37752.1880.057-0.249-0.6200.002
46A1070HIS0-0.0040.0011.865-9.875-13.3248.916-2.758-2.7090.037
54A1078ILE0-0.052-0.0342.821-2.882-0.6800.713-0.936-1.9780.005
55A1079ALA00.0300.0092.504-6.780-4.2231.577-2.144-1.991-0.024
56A1080THR0-0.136-0.1042.822-6.916-5.3200.249-0.429-1.416-0.004
57A1081VAL00.0560.0334.6931.5781.556-0.002-0.0080.0320.000
6A1030LEU0-0.043-0.0195.6734.5004.5000.0000.0000.0000.000
7A1031ASP-1-0.756-0.8578.793-22.331-22.3310.0000.0000.0000.000
8A1032GLU-1-0.854-0.95412.382-16.329-16.3290.0000.0000.0000.000
9A1033LEU0-0.066-0.01415.4861.2511.2510.0000.0000.0000.000
10A1034SER0-0.070-0.06212.0720.0560.0560.0000.0000.0000.000
11A1035PHE00.0120.01310.0020.0480.0480.0000.0000.0000.000
12A1036GLU-1-0.814-0.89312.497-14.234-14.2340.0000.0000.0000.000
13A1037LYS10.9750.97814.99115.05615.0560.0000.0000.0000.000
14A1038THR0-0.056-0.0388.8740.1270.1270.0000.0000.0000.000
15A1039VAL0-0.004-0.01010.4870.1640.1640.0000.0000.0000.000
16A1040GLU-1-0.958-0.97212.167-13.539-13.5390.0000.0000.0000.000
17A1041ARG10.8580.93013.31014.85114.8510.0000.0000.0000.000
18A1042PHE0-0.029-0.0028.284-0.056-0.0560.0000.0000.0000.000
19A1043PRO0-0.008-0.00312.3760.0930.0930.0000.0000.0000.000
20A1044TYR00.0350.00412.5270.5500.5500.0000.0000.0000.000
21A1045SER00.0040.0049.002-0.857-0.8570.0000.0000.0000.000
22A1046VAL0-0.038-0.0057.5560.6550.6550.0000.0000.0000.000
23A1047VAL00.0160.0126.607-2.615-2.6150.0000.0000.0000.000
25A1049PHE00.0570.0257.258-3.468-3.4680.0000.0000.0000.000
26A1050ASP-1-0.801-0.9218.657-29.168-29.1680.0000.0000.0000.000
27A1051ILE00.0400.03510.1180.5180.5180.0000.0000.0000.000
28A1052ALA00.014-0.0018.901-3.862-3.8620.0000.0000.0000.000
29A1053SER0-0.067-0.0306.9681.1081.1080.0000.0000.0000.000
30A1054PRO00.0020.0215.1201.9691.9690.0000.0000.0000.000
31A1055TYR0-0.022-0.0216.370-4.459-4.4590.0000.0000.0000.000
32A1056GLY00.0420.0187.9162.1792.1790.0000.0000.0000.000
33A1057GLU-1-0.927-0.9638.325-21.197-21.1970.0000.0000.0000.000
34A1058LYS10.9600.9789.48817.67417.6740.0000.0000.0000.000
37A1061ALA0-0.0020.0056.260-0.051-0.0510.0000.0000.0000.000
41A1065PHE00.013-0.0056.2702.2212.2210.0000.0000.0000.000
44A1068SER00.005-0.0067.1292.6562.6560.0000.0000.0000.000
45A1069ALA00.0380.0136.4811.5741.5740.0000.0000.0000.000
47A1071LYS10.7800.8577.14320.74820.7480.0000.0000.0000.000
48A1072ALA0-0.089-0.03810.2751.3101.3100.0000.0000.0000.000
49A1073THR00.0450.0159.6520.9320.9320.0000.0000.0000.000
50A1074LYS10.8800.9238.91917.39417.3940.0000.0000.0000.000
51A1075ASP-1-0.850-0.90610.053-14.420-14.4200.0000.0000.0000.000
52A1076LEU0-0.058-0.0307.9030.0570.0570.0000.0000.0000.000
53A1077LEU00.0130.0225.227-0.038-0.0380.0000.0000.0000.000
58A1082GLY00.0160.0128.3681.0791.0790.0000.0000.0000.000
59A1083VAL00.0030.0119.4531.7301.7300.0000.0000.0000.000
60A1084LYS10.8500.91213.18219.10219.1020.0000.0000.0000.000
61A1085ASP-1-0.918-0.95514.897-14.534-14.5340.0000.0000.0000.000
62A1086TYR00.008-0.00117.8300.6270.6270.0000.0000.0000.000
63A1087GLY0-0.015-0.00418.732-0.815-0.8150.0000.0000.0000.000
64A1088GLU-1-0.925-0.97020.504-13.104-13.1040.0000.0000.0000.000
65A1089LEU0-0.033-0.01519.118-0.067-0.0670.0000.0000.0000.000
66A1090GLU-1-0.888-0.94013.867-22.409-22.4090.0000.0000.0000.000
67A1091ASN00.018-0.01811.8920.1020.1020.0000.0000.0000.000
68A1092LYS10.8510.93815.19515.35415.3540.0000.0000.0000.000
69A1093ALA00.0700.03818.0210.2010.2010.0000.0000.0000.000
70A1094LEU0-0.032-0.01012.2490.4150.4150.0000.0000.0000.000
71A1095GLY00.025-0.00415.339-0.052-0.0520.0000.0000.0000.000
72A1096ASP-1-0.870-0.93916.104-14.004-14.0040.0000.0000.0000.000
73A1097ARG10.7350.84717.78015.27715.2770.0000.0000.0000.000
74A1098TYR0-0.062-0.05914.9950.4490.4490.0000.0000.0000.000
75A1099LYS10.8040.90418.01213.08013.0800.0000.0000.0000.000
76A1100VAL0-0.0070.01014.1920.0740.0740.0000.0000.0000.000
77A1101ASP-1-0.789-0.88817.371-13.931-13.9310.0000.0000.0000.000
78A1102ASP-1-0.814-0.88817.497-15.574-15.5740.0000.0000.0000.000
79A1103LYS10.7940.88418.57913.62213.6220.0000.0000.0000.000
80A1104ASN0-0.128-0.07018.1660.0660.0660.0000.0000.0000.000
81A1105PHE00.0210.04212.969-0.593-0.5930.0000.0000.0000.000
82A1106PRO0-0.071-0.0379.9710.3590.3590.0000.0000.0000.000
83A1107SER00.0160.00311.9961.9041.9040.0000.0000.0000.000
84A1108ILE0-0.058-0.0328.934-1.838-1.8380.0000.0000.0000.000
85A1109PHE00.0490.02510.6981.5361.5360.0000.0000.0000.000
86A1110LEU0-0.047-0.02610.893-1.419-1.4190.0000.0000.0000.000
87A1111PHE00.0360.02211.8190.6850.6850.0000.0000.0000.000
88A1112LYS10.8320.90113.80113.18613.1860.0000.0000.0000.000
89A1113GLY00.0360.03414.9500.6040.6040.0000.0000.0000.000
90A1114ASN00.0230.00816.3070.3160.3160.0000.0000.0000.000
91A1115ALA00.0330.02015.870-0.463-0.4630.0000.0000.0000.000
92A1116ASP-1-0.857-0.90116.863-13.247-13.2470.0000.0000.0000.000
93A1117GLU-1-0.922-0.95619.141-12.170-12.1700.0000.0000.0000.000
94A1118TYR0-0.010-0.02615.896-0.885-0.8850.0000.0000.0000.000
95A1119VAL0-0.0240.00716.4110.6390.6390.0000.0000.0000.000
96A1120GLN00.0190.00615.529-0.449-0.4490.0000.0000.0000.000
97A1121LEU0-0.035-0.01913.3310.6780.6780.0000.0000.0000.000
98A1122PRO00.001-0.01116.264-0.074-0.0740.0000.0000.0000.000
99A1123SER00.0560.02617.841-0.183-0.1830.0000.0000.0000.000
100A1124HIS00.0030.00918.932-0.260-0.2600.0000.0000.0000.000
101A1125VAL0-0.068-0.03116.6520.2750.2750.0000.0000.0000.000
102A1126ASP-1-0.811-0.90415.445-18.436-18.4360.0000.0000.0000.000
103A1127VAL00.0050.0109.504-0.033-0.0330.0000.0000.0000.000
104A1128THR00.0400.00711.422-1.382-1.3820.0000.0000.0000.000
105A1129LEU00.022-0.00210.010-0.018-0.0180.0000.0000.0000.000
106A1130ASP-1-0.908-0.96411.947-15.859-15.8590.0000.0000.0000.000
107A1131ASN0-0.029-0.01814.6221.1221.1220.0000.0000.0000.000
108A1132LEU00.0100.0139.0270.2690.2690.0000.0000.0000.000
109A1133LYS10.8140.91712.20317.90117.9010.0000.0000.0000.000
110A1134ALA0-0.012-0.00413.9420.6370.6370.0000.0000.0000.000
111A1135PHE0-0.0160.00212.3770.5550.5550.0000.0000.0000.000
112A1136VAL00.0540.01711.2470.3060.3060.0000.0000.0000.000
113A1137SER0-0.043-0.01014.4450.7400.7400.0000.0000.0000.000
114A1138ALA0-0.017-0.00517.7800.5340.5340.0000.0000.0000.000
115A1139ASN0-0.051-0.02916.6980.7420.7420.0000.0000.0000.000
116A1140THR0-0.001-0.00114.287-0.157-0.1570.0000.0000.0000.000
117A1141PRO0-0.0120.00917.5030.1510.1510.0000.0000.0000.000
118A1142LEU0-0.0140.00312.3800.0330.0330.0000.0000.0000.000
119A1143TYR00.0240.01215.884-0.190-0.1900.0000.0000.0000.000
120A1144ILE00.009-0.00110.420-0.176-0.1760.0000.0000.0000.000
121A1145GLY00.0210.00713.9610.0990.0990.0000.0000.0000.000
122A1146ARG10.8760.92715.71412.70512.7050.0000.0000.0000.000
123A1147ASP-1-0.777-0.88414.721-17.880-17.8800.0000.0000.0000.000
124A1148GLY00.0460.02016.3080.8100.8100.0000.0000.0000.000
125A1149CYS0-0.056-0.01018.1690.6200.6200.0000.0000.0000.000
126A1150ILE0-0.0040.00617.606-0.688-0.6880.0000.0000.0000.000
127A1151LYS10.8540.93814.60315.26515.2650.0000.0000.0000.000
128A1152GLU-1-0.805-0.92418.881-12.162-12.1620.0000.0000.0000.000
129A1153PHE0-0.0070.00122.6070.4020.4020.0000.0000.0000.000
130A1154ASN00.0550.01521.8570.5090.5090.0000.0000.0000.000
131A1155GLU-1-0.957-0.97023.274-10.255-10.2550.0000.0000.0000.000
132A1156VAL0-0.016-0.01625.7290.3460.3460.0000.0000.0000.000
133A1157LEU0-0.020-0.00126.8590.2800.2800.0000.0000.0000.000
134A1158LYS10.8960.94825.26910.13910.1390.0000.0000.0000.000
135A1159ASN00.0470.02030.9200.1910.1910.0000.0000.0000.000
136A1160TYR00.0400.01432.3490.1930.1930.0000.0000.0000.000
137A1161ALA00.0230.00634.2870.1710.1710.0000.0000.0000.000
138A1162ASN0-0.013-0.02536.6940.3020.3020.0000.0000.0000.000
139A1163ILE0-0.0210.01735.2640.1680.1680.0000.0000.0000.000
140A1164PRO00.0760.02039.2180.0240.0240.0000.0000.0000.000
141A1165ASP-1-0.760-0.86240.512-6.954-6.9540.0000.0000.0000.000
142A1166ALA00.0150.00440.643-0.122-0.1220.0000.0000.0000.000
143A1167GLU-1-0.886-0.94137.973-7.321-7.3210.0000.0000.0000.000
144A1168GLN0-0.011-0.01536.252-0.088-0.0880.0000.0000.0000.000
145A1169LEU00.0290.01635.763-0.227-0.2270.0000.0000.0000.000
146A1170LYS10.8860.94035.9427.3317.3310.0000.0000.0000.000
147A1171LEU0-0.026-0.01931.369-0.187-0.1870.0000.0000.0000.000
148A1172ILE0-0.006-0.01531.685-0.300-0.3000.0000.0000.0000.000
149A1173GLU-1-0.922-0.95232.282-7.747-7.7470.0000.0000.0000.000
150A1174LYS10.9420.97428.5258.8258.8250.0000.0000.0000.000
151A1175LEU0-0.033-0.03126.256-0.289-0.2890.0000.0000.0000.000
152A1176GLN00.0050.01727.413-0.254-0.2540.0000.0000.0000.000
153A1177ALA00.0250.01428.505-0.220-0.2200.0000.0000.0000.000
154A1178LYS10.9070.96220.39911.45011.4500.0000.0000.0000.000
155A1179GLN0-0.012-0.02624.112-0.131-0.1310.0000.0000.0000.000
156A1180GLU-1-0.901-0.94924.197-9.357-9.3570.0000.0000.0000.000
157A1181GLN0-0.045-0.00824.197-0.036-0.0360.0000.0000.0000.000
158A1182LEU0-0.076-0.01919.705-0.418-0.4180.0000.0000.0000.000
159A1183THR00.0370.01517.224-0.054-0.0540.0000.0000.0000.000
160A1184ASP-1-0.830-0.90212.840-17.841-17.8410.0000.0000.0000.000
161A1185PRO00.0530.01314.1930.6330.6330.0000.0000.0000.000
162A1186GLU-1-0.764-0.85614.413-17.068-17.0680.0000.0000.0000.000
163A1187GLN0-0.021-0.02214.9291.3321.3320.0000.0000.0000.000
164A1188GLN00.021-0.00618.1080.6040.6040.0000.0000.0000.000
165A1189GLN0-0.045-0.01019.4810.8280.8280.0000.0000.0000.000
166A1190ASN0-0.032-0.03917.1050.7300.7300.0000.0000.0000.000
167A1191ALA00.0350.01621.3270.5000.5000.0000.0000.0000.000
168A1192ARG10.8820.94122.89412.07812.0780.0000.0000.0000.000
169A1193ALA0-0.0070.01124.6210.3640.3640.0000.0000.0000.000
170A1194TYR00.004-0.02121.7100.1640.1640.0000.0000.0000.000
171A1195LEU00.0270.00026.9250.3430.3430.0000.0000.0000.000
172A1196ILE0-0.056-0.01628.9810.3530.3530.0000.0000.0000.000
173A1197TYR0-0.046-0.04827.1880.1340.1340.0000.0000.0000.000
174A1198MET0-0.0270.01129.8980.1310.1310.0000.0000.0000.000
175A1199ARG10.9150.95732.0138.7538.7530.0000.0000.0000.000
176A1200LYS10.8530.91134.7477.9337.9330.0000.0000.0000.000
177A1201ILE0-0.028-0.00833.1360.1560.1560.0000.0000.0000.000
178A1202HIS0-0.077-0.03236.9510.1720.1720.0000.0000.0000.000
179A1203GLU-1-0.874-0.91038.965-7.236-7.2360.0000.0000.0000.000
180A1204VAL0-0.023-0.01439.5130.1570.1570.0000.0000.0000.000
181A1205GLY00.0840.05840.7530.0660.0660.0000.0000.0000.000
182A1206TYR0-0.008-0.02935.368-0.291-0.2910.0000.0000.0000.000
183A1207ASP-1-0.831-0.90938.253-7.238-7.2380.0000.0000.0000.000
184A1208PHE00.0390.01232.539-0.212-0.2120.0000.0000.0000.000
185A1209LEU0-0.009-0.00632.472-0.271-0.2710.0000.0000.0000.000
186A1210GLU-1-0.828-0.89334.295-7.856-7.8560.0000.0000.0000.000
187A1211GLU-1-0.923-0.95635.938-7.924-7.9240.0000.0000.0000.000
188A1212GLU-1-0.724-0.81830.557-9.716-9.7160.0000.0000.0000.000
189A1213THR0-0.006-0.02530.689-0.410-0.4100.0000.0000.0000.000
190A1214LYS10.8340.90631.5567.4447.4440.0000.0000.0000.000
191A1215ARG10.7970.87830.2649.3299.3290.0000.0000.0000.000
192A1216LEU0-0.022-0.01727.094-0.213-0.2130.0000.0000.0000.000
193A1217LEU0-0.004-0.01327.899-0.370-0.3700.0000.0000.0000.000
194A1218ARG10.9560.98029.8588.2018.2010.0000.0000.0000.000
195A1219LEU0-0.028-0.01228.356-0.028-0.0280.0000.0000.0000.000
196A1220LYS10.8990.95423.32011.19811.1980.0000.0000.0000.000
197A1221ALA0-0.0060.01126.708-0.243-0.2430.0000.0000.0000.000
198A1222GLY00.0170.01929.2330.2450.2450.0000.0000.0000.000
199A1223LYS10.9350.95827.5639.2389.2380.0000.0000.0000.000
200A1224VAL0-0.0130.00523.377-0.072-0.0720.0000.0000.0000.000
201A1225THR00.0460.01520.665-0.252-0.2520.0000.0000.0000.000
202A1226GLU-1-0.802-0.89715.091-17.606-17.6060.0000.0000.0000.000
203A1227ALA00.0700.03417.083-0.094-0.0940.0000.0000.0000.000
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205A1229LYS10.9050.93417.03016.32516.3250.0000.0000.0000.000
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