FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 1YQZZ

Calculation Name: 1EUV-A-Xray547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1EUV

Chain ID: A

ChEMBL ID:

UniProt ID: Q12306

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 221
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2872415.448621
FMO2-HF: Nuclear repulsion 2781885.916569
FMO2-HF: Total energy -90529.532052
FMO2-MP2: Total energy -90791.42471


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:401:GLY)


Summations of interaction energy for fragment #1(A:401:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-101.733-100.637-0.018-0.387-0.691-0.001
Interaction energy analysis for fragmet #1(A:401:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.831 / q_NPA : 0.897
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A403LEU0-0.0100.0013.8071.8292.839-0.017-0.331-0.662-0.001
198A598ASP-1-0.942-0.9814.265-62.771-62.685-0.001-0.056-0.0290.000
4A404VAL0-0.024-0.0096.6035.8935.8930.0000.0000.0000.000
5A405PRO0-0.047-0.0058.089-2.336-2.3360.0000.0000.0000.000
6A406GLU-1-0.865-0.9419.480-21.747-21.7470.0000.0000.0000.000
7A407LEU0-0.054-0.01811.7690.3560.3560.0000.0000.0000.000
8A408ASN0-0.024-0.03215.1720.7350.7350.0000.0000.0000.000
9A409GLU-1-0.834-0.93117.415-13.870-13.8700.0000.0000.0000.000
10A410LYS10.8330.90019.85215.16115.1610.0000.0000.0000.000
11A411ASP-1-0.802-0.87518.602-15.093-15.0930.0000.0000.0000.000
12A412ASP-1-0.803-0.88818.976-15.466-15.4660.0000.0000.0000.000
13A413ASP-1-0.871-0.93820.666-11.752-11.7520.0000.0000.0000.000
14A414GLN0-0.089-0.03922.5311.0141.0140.0000.0000.0000.000
15A415VAL00.0170.00720.1730.4790.4790.0000.0000.0000.000
16A416GLN00.0370.01623.4990.0900.0900.0000.0000.0000.000
17A417LYS10.9090.94725.62511.20511.2050.0000.0000.0000.000
18A418ALA00.0210.02426.5390.4310.4310.0000.0000.0000.000
19A419LEU0-0.053-0.02223.7110.3490.3490.0000.0000.0000.000
20A420ALA0-0.047-0.02428.0780.3170.3170.0000.0000.0000.000
21A421SER0-0.0260.00731.1870.5000.5000.0000.0000.0000.000
22A422ARG10.9060.94233.2918.2348.2340.0000.0000.0000.000
23A423GLU-1-0.863-0.94136.862-7.661-7.6610.0000.0000.0000.000
24A424ASN0-0.031-0.01034.698-0.435-0.4350.0000.0000.0000.000
25A425THR00.0120.00134.4520.0080.0080.0000.0000.0000.000
26A426GLN0-0.038-0.04433.082-0.279-0.2790.0000.0000.0000.000
27A427LEU0-0.044-0.02228.0960.0730.0730.0000.0000.0000.000
28A428MET0-0.0050.01126.179-0.369-0.3690.0000.0000.0000.000
29A429ASN0-0.022-0.01129.543-0.017-0.0170.0000.0000.0000.000
30A430ARG10.8200.88827.32111.02811.0280.0000.0000.0000.000
31A431ASP-1-0.837-0.92127.102-11.592-11.5920.0000.0000.0000.000
32A432ASN0-0.071-0.05529.8230.0000.0000.0000.0000.0000.000
33A433ILE00.0070.03226.6050.0670.0670.0000.0000.0000.000
34A434GLU-1-0.867-0.91829.865-9.103-9.1030.0000.0000.0000.000
35A435ILE00.001-0.00625.743-0.189-0.1890.0000.0000.0000.000
36A436THR00.010-0.02030.0140.2220.2220.0000.0000.0000.000
37A437VAL00.0340.00930.315-0.393-0.3930.0000.0000.0000.000
38A438ARG10.9250.95730.5789.1319.1310.0000.0000.0000.000
39A439ASP-1-0.751-0.82928.694-10.488-10.4880.0000.0000.0000.000
40A440PHE00.0440.03023.979-0.419-0.4190.0000.0000.0000.000
41A441LYS10.8910.95425.8199.4779.4770.0000.0000.0000.000
42A442THR0-0.092-0.05526.094-0.235-0.2350.0000.0000.0000.000
43A443LEU00.0210.01220.224-0.398-0.3980.0000.0000.0000.000
44A444ALA0-0.0130.00822.099-0.454-0.4540.0000.0000.0000.000
45A445PRO00.016-0.01822.118-0.293-0.2930.0000.0000.0000.000
46A446ARG10.9030.95122.80313.53013.5300.0000.0000.0000.000
47A447ARG10.9050.98624.60611.52411.5240.0000.0000.0000.000
48A448TRP00.0220.01324.357-0.564-0.5640.0000.0000.0000.000
49A449LEU00.0200.01620.6130.2730.2730.0000.0000.0000.000
50A450ASN0-0.011-0.01825.274-0.058-0.0580.0000.0000.0000.000
51A451ASP-1-0.847-0.94126.485-11.000-11.0000.0000.0000.0000.000
52A452THR0-0.006-0.00227.353-0.307-0.3070.0000.0000.0000.000
53A453ILE00.0040.00022.563-0.305-0.3050.0000.0000.0000.000
54A454ILE0-0.0020.00621.867-0.702-0.7020.0000.0000.0000.000
55A455GLU-1-0.888-0.94322.940-11.492-11.4920.0000.0000.0000.000
56A456PHE00.0150.00120.227-0.186-0.1860.0000.0000.0000.000
57A457PHE00.0370.00414.624-0.403-0.4030.0000.0000.0000.000
58A458MET0-0.053-0.02019.799-0.580-0.5800.0000.0000.0000.000
59A459LYS10.8550.92521.77711.24711.2470.0000.0000.0000.000
60A460TYR00.0280.00813.8350.1910.1910.0000.0000.0000.000
61A461ILE0-0.0020.02815.192-0.471-0.4710.0000.0000.0000.000
62A462GLU-1-0.794-0.87118.733-12.409-12.4090.0000.0000.0000.000
63A463LYS10.7750.87921.71212.59012.5900.0000.0000.0000.000
64A464SER0-0.054-0.04716.765-0.202-0.2020.0000.0000.0000.000
65A465THR0-0.015-0.00416.654-1.145-1.1450.0000.0000.0000.000
66A466PRO00.0020.00418.0680.9020.9020.0000.0000.0000.000
67A467ASN0-0.039-0.01920.814-0.109-0.1090.0000.0000.0000.000
68A468THR00.0290.00819.334-0.127-0.1270.0000.0000.0000.000
69A469VAL0-0.032-0.00822.3530.3120.3120.0000.0000.0000.000
70A470ALA00.0180.00421.573-0.450-0.4500.0000.0000.0000.000
71A471PHE0-0.020-0.01223.6640.5150.5150.0000.0000.0000.000
72A472ASN00.0320.00125.553-0.344-0.3440.0000.0000.0000.000
73A473SER00.0680.02027.4180.1170.1170.0000.0000.0000.000
74A474PHE0-0.0210.00528.6030.2530.2530.0000.0000.0000.000
75A475PHE0-0.0010.01029.4960.3280.3280.0000.0000.0000.000
76A476TYR00.042-0.01228.9440.1660.1660.0000.0000.0000.000
77A477THR0-0.0100.00331.0150.2550.2550.0000.0000.0000.000
78A478ASN0-0.038-0.02333.7860.3770.3770.0000.0000.0000.000
79A479LEU0-0.053-0.01731.3270.2570.2570.0000.0000.0000.000
80A480SER0-0.009-0.00533.9250.2500.2500.0000.0000.0000.000
81A481GLU-1-0.849-0.90535.787-8.328-8.3280.0000.0000.0000.000
82A482ARG10.7360.83637.6908.6318.6310.0000.0000.0000.000
83A483GLY00.0250.03038.4160.1630.1630.0000.0000.0000.000
84A484TYR00.030-0.01735.6240.0690.0690.0000.0000.0000.000
85A485GLN00.013-0.01138.199-0.048-0.0480.0000.0000.0000.000
86A486GLY00.0060.01938.7740.0800.0800.0000.0000.0000.000
87A487VAL00.0080.00033.527-0.078-0.0780.0000.0000.0000.000
88A488ARG10.9390.98335.8107.3917.3910.0000.0000.0000.000
89A489ARG10.8770.93038.0737.6817.6810.0000.0000.0000.000
90A490TRP0-0.0150.00631.5190.0020.0020.0000.0000.0000.000
91A491MET00.0790.05729.138-0.188-0.1880.0000.0000.0000.000
92A492LYS10.9670.97633.1867.7877.7870.0000.0000.0000.000
93A493ARG10.8480.91534.6158.3958.3950.0000.0000.0000.000
94A494LYS10.8500.91526.78111.82011.8200.0000.0000.0000.000
95A495LYS10.8840.94930.5418.7608.7600.0000.0000.0000.000
96A496THR00.0720.04828.5800.1510.1510.0000.0000.0000.000
97A497GLN0-0.010-0.01731.2470.3920.3920.0000.0000.0000.000
98A498ILE00.0540.02929.396-0.262-0.2620.0000.0000.0000.000
99A499ASP-1-0.836-0.89529.569-9.751-9.7510.0000.0000.0000.000
100A500LYS10.7750.86629.2809.4589.4580.0000.0000.0000.000
101A501LEU0-0.060-0.02125.379-0.240-0.2400.0000.0000.0000.000
102A502ASP-1-0.821-0.90120.689-14.527-14.5270.0000.0000.0000.000
103A503LYS10.8110.89316.17318.45318.4530.0000.0000.0000.000
104A504ILE0-0.028-0.01022.2080.4220.4220.0000.0000.0000.000
105A505PHE00.0050.01516.915-0.036-0.0360.0000.0000.0000.000
106A506THR0-0.021-0.03222.4150.6980.6980.0000.0000.0000.000
107A507PRO00.0260.03522.620-0.140-0.1400.0000.0000.0000.000
108A508ILE0-0.005-0.01724.0820.6580.6580.0000.0000.0000.000
109A509ASN0-0.008-0.00426.233-0.024-0.0240.0000.0000.0000.000
110A510LEU00.0240.01726.7410.3840.3840.0000.0000.0000.000
111A511ASN00.003-0.00530.1710.0780.0780.0000.0000.0000.000
112A512GLN0-0.014-0.00632.009-0.017-0.0170.0000.0000.0000.000
113A513SER0-0.090-0.05030.7320.0390.0390.0000.0000.0000.000
114A514HIS00.017-0.01522.772-0.077-0.0770.0000.0000.0000.000
115A515TRP0-0.055-0.03923.1490.3840.3840.0000.0000.0000.000
116A516ALA00.0300.02622.174-0.562-0.5620.0000.0000.0000.000
117A517LEU0-0.037-0.02817.9740.1970.1970.0000.0000.0000.000
118A518GLY00.0310.03021.888-0.033-0.0330.0000.0000.0000.000
119A519ILE0-0.017-0.02317.206-0.316-0.3160.0000.0000.0000.000
120A520ILE00.0110.01621.5360.2010.2010.0000.0000.0000.000
121A521ASP-1-0.799-0.90219.041-16.379-16.3790.0000.0000.0000.000
122A522LEU0-0.007-0.01622.2350.4050.4050.0000.0000.0000.000
123A523LYS10.8350.92918.42416.55116.5510.0000.0000.0000.000
124A524LYS10.7860.86516.74417.85317.8530.0000.0000.0000.000
125A525LYS10.8310.91922.81110.75710.7570.0000.0000.0000.000
126A526THR00.0190.01921.9070.0050.0050.0000.0000.0000.000
127A527ILE0-0.046-0.02423.644-0.256-0.2560.0000.0000.0000.000
128A528GLY00.0300.02121.1020.0910.0910.0000.0000.0000.000
129A529TYR0-0.079-0.06522.1640.3660.3660.0000.0000.0000.000
130A530VAL00.007-0.00316.682-0.339-0.3390.0000.0000.0000.000
131A531ASP-1-0.759-0.85919.835-13.490-13.4900.0000.0000.0000.000
132A532SER00.0270.00517.877-0.383-0.3830.0000.0000.0000.000
133A533LEU0-0.047-0.02719.265-0.257-0.2570.0000.0000.0000.000
134A534SER00.0080.00121.9641.0081.0080.0000.0000.0000.000
135A535ASN0-0.049-0.02822.938-0.513-0.5130.0000.0000.0000.000
136A536GLY00.0500.03224.2240.1840.1840.0000.0000.0000.000
137A537PRO0-0.026-0.01925.0990.3180.3180.0000.0000.0000.000
138A538ASN00.0330.01827.7180.4820.4820.0000.0000.0000.000
139A539ALA00.0540.02230.779-0.110-0.1100.0000.0000.0000.000
140A540MET00.0080.00230.8270.1590.1590.0000.0000.0000.000
141A541SER0-0.0010.00426.953-0.147-0.1470.0000.0000.0000.000
142A542PHE00.0590.02428.919-0.114-0.1140.0000.0000.0000.000
143A543ALA00.0040.02331.3080.1230.1230.0000.0000.0000.000
144A544ILE00.0090.01527.2450.0110.0110.0000.0000.0000.000
145A545LEU0-0.003-0.00425.3420.0210.0210.0000.0000.0000.000
146A546THR00.005-0.01429.1360.1460.1460.0000.0000.0000.000
147A547ASP-1-0.822-0.89932.153-9.103-9.1030.0000.0000.0000.000
148A548LEU0-0.017-0.01426.1340.1480.1480.0000.0000.0000.000
149A549GLN00.0250.00330.1650.1010.1010.0000.0000.0000.000
150A550LYS10.8810.94031.6818.9618.9610.0000.0000.0000.000
151A551TYR0-0.060-0.04230.3720.1050.1050.0000.0000.0000.000
152A552VAL00.0040.00028.9170.1170.1170.0000.0000.0000.000
153A553MET0-0.0070.03332.0650.1920.1920.0000.0000.0000.000
154A554GLU-1-0.880-0.93535.598-7.888-7.8880.0000.0000.0000.000
155A555GLU-1-0.877-0.91732.869-8.983-8.9830.0000.0000.0000.000
156A556SER0-0.067-0.04533.8380.1580.1580.0000.0000.0000.000
157A557LYS10.8760.94035.8018.3048.3040.0000.0000.0000.000
158A558HIS0-0.021-0.02437.9940.2200.2200.0000.0000.0000.000
159A559THR0-0.045-0.02036.405-0.008-0.0080.0000.0000.0000.000
160A560ILE0-0.025-0.01430.273-0.174-0.1740.0000.0000.0000.000
161A561GLY00.0420.00631.3510.1000.1000.0000.0000.0000.000
162A562GLU-1-0.921-0.97232.273-8.585-8.5850.0000.0000.0000.000
163A563ASP-1-0.863-0.91532.018-10.036-10.0360.0000.0000.0000.000
164A564PHE0-0.053-0.02026.522-0.297-0.2970.0000.0000.0000.000
165A565ASP-1-0.877-0.92725.867-11.788-11.7880.0000.0000.0000.000
166A566LEU0-0.073-0.03626.408-0.350-0.3500.0000.0000.0000.000
167A567ILE00.0350.01521.8610.1130.1130.0000.0000.0000.000
168A568HIS00.005-0.00122.530-0.557-0.5570.0000.0000.0000.000
169A569LEU0-0.020-0.01617.672-0.065-0.0650.0000.0000.0000.000
170A570ASP-1-0.904-0.93716.748-16.591-16.5910.0000.0000.0000.000
171A571CYS0-0.044-0.01514.211-0.797-0.7970.0000.0000.0000.000
172A572PRO00.0020.02710.8521.8021.8020.0000.0000.0000.000
173A573GLN00.006-0.00913.8421.6521.6520.0000.0000.0000.000
174A574GLN00.0040.00116.417-1.170-1.1700.0000.0000.0000.000
175A575PRO0-0.037-0.01217.0530.8410.8410.0000.0000.0000.000
176A576ASN0-0.046-0.04519.6701.0691.0690.0000.0000.0000.000
177A577GLY00.0820.04122.771-0.142-0.1420.0000.0000.0000.000
178A578TYR0-0.034-0.02221.0270.7880.7880.0000.0000.0000.000
179A579ASP-1-0.765-0.86718.241-16.847-16.8470.0000.0000.0000.000
180A580CYS0-0.0190.04119.251-0.737-0.7370.0000.0000.0000.000
181A581GLY00.0750.02020.055-0.459-0.4590.0000.0000.0000.000
182A582ILE0-0.0100.00515.977-0.343-0.3430.0000.0000.0000.000
183A583TYR00.030-0.00414.822-1.266-1.2660.0000.0000.0000.000
184A584VAL00.0030.02715.818-0.818-0.8180.0000.0000.0000.000
185A585CYS0-0.045-0.00716.802-0.024-0.0240.0000.0000.0000.000
186A586MET0-0.029-0.00411.640-1.330-1.3300.0000.0000.0000.000
187A587ASN00.055-0.00712.292-2.656-2.6560.0000.0000.0000.000
188A588THR0-0.019-0.02514.3270.3070.3070.0000.0000.0000.000
189A589LEU0-0.026-0.00510.3720.1880.1880.0000.0000.0000.000
190A590TYR00.0340.0175.283-2.519-2.5190.0000.0000.0000.000
191A591GLY00.0550.03510.438-0.039-0.0390.0000.0000.0000.000
192A592SER0-0.081-0.05913.6841.0671.0670.0000.0000.0000.000
193A593ALA0-0.005-0.01210.2710.9390.9390.0000.0000.0000.000
194A594ASP-1-0.865-0.90811.423-20.035-20.0350.0000.0000.0000.000
195A595ALA0-0.0090.0046.985-1.032-1.0320.0000.0000.0000.000
196A596PRO00.000-0.0136.5872.4112.4110.0000.0000.0000.000
197A597LEU0-0.012-0.0047.538-3.453-3.4530.0000.0000.0000.000
199A599PHE00.0030.0146.777-1.729-1.7290.0000.0000.0000.000
200A600ASP-1-0.821-0.9217.927-27.240-27.2400.0000.0000.0000.000
201A601TYR00.026-0.01310.5640.6360.6360.0000.0000.0000.000
202A602LYS10.8870.94010.72626.16526.1650.0000.0000.0000.000
203A603ASP-1-0.766-0.8577.713-41.672-41.6720.0000.0000.0000.000
204A604ALA00.0280.00410.5771.5511.5510.0000.0000.0000.000
205A605ILE0-0.057-0.03214.1941.4251.4250.0000.0000.0000.000
206A606ARG10.9150.9678.56831.89431.8940.0000.0000.0000.000
207A607MET0-0.0170.00813.1410.6020.6020.0000.0000.0000.000
208A608ARG10.7440.86314.41516.48916.4890.0000.0000.0000.000
209A609ARG10.8250.88716.36416.11216.1120.0000.0000.0000.000
210A610PHE00.0450.01312.5860.6120.6120.0000.0000.0000.000
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