Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: 22Q7R

Calculation Name: 1UUN-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1UUN

Chain ID: A

ChEMBL ID:

UniProt ID: A0QR29

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 184
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1457297.131941
FMO2-HF: Nuclear repulsion 1389980.740328
FMO2-HF: Total energy -67316.391613
FMO2-MP2: Total energy -67516.960469


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-10.934-11.63710.765-5.346-4.717-0.04
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.002 / q_NPA : -0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASP-1-0.800-0.8843.815-4.746-3.382-0.007-0.657-0.7010.003
4A4ASN0-0.031-0.0045.9601.2181.2180.0000.0000.0000.000
5A5GLU-1-0.861-0.9249.308-1.267-1.2670.0000.0000.0000.000
6A6LEU0-0.015-0.00611.5670.1430.1430.0000.0000.0000.000
7A7SER0-0.017-0.01915.349-0.026-0.0260.0000.0000.0000.000
8A8LEU0-0.030-0.01318.0100.0250.0250.0000.0000.0000.000
9A9VAL0-0.028-0.00221.668-0.002-0.0020.0000.0000.0000.000
10A10ASP-1-0.771-0.87624.577-0.253-0.2530.0000.0000.0000.000
11A11GLY00.007-0.00626.2660.0170.0170.0000.0000.0000.000
12A12GLN0-0.120-0.06628.8460.0180.0180.0000.0000.0000.000
13A13ASP-1-0.944-0.96928.178-0.163-0.1630.0000.0000.0000.000
14A14ARG10.8460.92424.1400.2490.2490.0000.0000.0000.000
15A15THR0-0.053-0.02919.436-0.005-0.0050.0000.0000.0000.000
16A16LEU00.0060.01119.566-0.012-0.0120.0000.0000.0000.000
17A17THR00.0260.00713.3560.0110.0110.0000.0000.0000.000
18A18VAL00.0140.02313.905-0.012-0.0120.0000.0000.0000.000
19A19GLN0-0.007-0.0248.680-0.283-0.2830.0000.0000.0000.000
20A20GLN0-0.025-0.0218.1680.1800.1800.0000.0000.0000.000
21A21TRP00.016-0.0242.881-1.333-0.6200.343-0.355-0.702-0.002
22A22ASP-1-0.825-0.9161.852-9.250-12.23610.400-4.315-3.098-0.041
23A23THR0-0.098-0.0573.5582.2332.4390.029-0.019-0.2160.000
24A24PHE0-0.036-0.0166.6950.3630.3630.0000.0000.0000.000
25A25LEU0-0.0050.0049.0900.0360.0360.0000.0000.0000.000
26A26ASN0-0.004-0.00612.7420.1020.1020.0000.0000.0000.000
27A27GLY00.0400.00914.7450.0070.0070.0000.0000.0000.000
28A28VAL0-0.044-0.01718.2620.0400.0400.0000.0000.0000.000
29A29PHE0-0.046-0.03321.019-0.008-0.0080.0000.0000.0000.000
30A30PRO00.0210.01824.7430.0010.0010.0000.0000.0000.000
31A31LEU00.0700.03626.4560.0160.0160.0000.0000.0000.000
32A32ASP-1-0.812-0.88528.305-0.085-0.0850.0000.0000.0000.000
33A33ARG10.8030.88630.1400.0530.0530.0000.0000.0000.000
34A34ASN00.0330.04130.8650.0090.0090.0000.0000.0000.000
35A35ARG10.9710.96330.2780.0460.0460.0000.0000.0000.000
36A36LEU0-0.0180.01630.274-0.004-0.0040.0000.0000.0000.000
37A37THR0-0.028-0.02126.943-0.013-0.0130.0000.0000.0000.000
38A38ARG10.7680.87223.0250.1320.1320.0000.0000.0000.000
39A39GLU-1-0.756-0.86122.201-0.131-0.1310.0000.0000.0000.000
40A40TRP00.0050.00617.0030.0340.0340.0000.0000.0000.000
41A41PHE0-0.021-0.00915.8230.0090.0090.0000.0000.0000.000
42A42HIS00.0250.02811.3950.1080.1080.0000.0000.0000.000
43A43SER0-0.020-0.0089.5590.1410.1410.0000.0000.0000.000
44A44GLY00.0550.0347.123-0.166-0.1660.0000.0000.0000.000
45A45ARG10.8200.8925.4002.0042.0040.0000.0000.0000.000
46A46ALA00.0380.0348.331-0.413-0.4130.0000.0000.0000.000
47A47LYS10.7950.9056.0541.7821.7820.0000.0000.0000.000
48A48TYR0-0.026-0.04211.548-0.084-0.0840.0000.0000.0000.000
49A49ILE00.0150.01012.1800.0320.0320.0000.0000.0000.000
50A50VAL0-0.0090.00916.093-0.009-0.0090.0000.0000.0000.000
51A51ALA0-0.0100.00219.8390.0330.0330.0000.0000.0000.000
52A52GLY00.0200.01121.818-0.004-0.0040.0000.0000.0000.000
53A53PRO0-0.014-0.02225.5860.0030.0030.0000.0000.0000.000
54A54GLY00.0610.02327.851-0.012-0.0120.0000.0000.0000.000
55A55ALA0-0.054-0.00722.943-0.007-0.0070.0000.0000.0000.000
56A56ASP-1-0.922-0.97423.865-0.193-0.1930.0000.0000.0000.000
57A57GLU-1-0.961-0.98325.321-0.153-0.1530.0000.0000.0000.000
58A58PHE0-0.057-0.01921.239-0.004-0.0040.0000.0000.0000.000
59A59GLU-1-0.896-0.95424.712-0.212-0.2120.0000.0000.0000.000
60A60GLY0-0.013-0.01022.867-0.003-0.0030.0000.0000.0000.000
61A61THR00.0080.01921.5060.0160.0160.0000.0000.0000.000
62A62LEU0-0.021-0.01314.556-0.043-0.0430.0000.0000.0000.000
63A63GLU-1-0.825-0.88317.402-0.413-0.4130.0000.0000.0000.000
64A64LEU0-0.026-0.00210.915-0.115-0.1150.0000.0000.0000.000
65A65GLY00.0110.00214.8160.1120.1120.0000.0000.0000.000
66A66TYR00.0130.00814.879-0.075-0.0750.0000.0000.0000.000
67A67GLN0-0.025-0.00117.0560.0570.0570.0000.0000.0000.000
68A68ILE0-0.006-0.00219.243-0.023-0.0230.0000.0000.0000.000
69A69GLY00.0230.01121.8490.0170.0170.0000.0000.0000.000
70A70PHE00.000-0.01124.100-0.003-0.0030.0000.0000.0000.000
71A71PRO0-0.0340.00026.8820.0030.0030.0000.0000.0000.000
72A72TRP00.001-0.00630.2370.0060.0060.0000.0000.0000.000
73A73SER00.0580.02931.809-0.009-0.0090.0000.0000.0000.000
74A74LEU0-0.072-0.03434.1000.0070.0070.0000.0000.0000.000
75A75GLY00.0390.02935.777-0.004-0.0040.0000.0000.0000.000
76A76VAL0-0.030-0.03138.3140.0040.0040.0000.0000.0000.000
77A77GLY00.0360.03040.819-0.001-0.0010.0000.0000.0000.000
78A78ILE0-0.033-0.02943.5600.0020.0020.0000.0000.0000.000
79A79ASN00.0090.01046.6270.0010.0010.0000.0000.0000.000
80A80PHE00.0100.00350.1240.0020.0020.0000.0000.0000.000
81A81SER0-0.020-0.01852.8180.0000.0000.0000.0000.0000.000
82A82TYR00.021-0.00556.2980.0010.0010.0000.0000.0000.000
83A83THR0-0.057-0.01859.871-0.001-0.0010.0000.0000.0000.000
84A84THR00.0360.01963.0610.0010.0010.0000.0000.0000.000
85A85PRO0-0.018-0.00566.285-0.001-0.0010.0000.0000.0000.000
86A86ASN00.011-0.00769.3070.0010.0010.0000.0000.0000.000
87A87ILE0-0.003-0.00471.3790.0000.0000.0000.0000.0000.000
88A88LEU0-0.0040.01870.9680.0000.0000.0000.0000.0000.000
89A89ILE0-0.042-0.02374.7590.0000.0000.0000.0000.0000.000
90A90ASP-1-0.911-0.95674.689-0.024-0.0240.0000.0000.0000.000
91A91ASP-1-0.889-0.92877.069-0.021-0.0210.0000.0000.0000.000
92A92GLY0-0.032-0.01280.1060.0010.0010.0000.0000.0000.000
93A93ASP-1-0.796-0.86882.380-0.016-0.0160.0000.0000.0000.000
94A94ILE00.006-0.01683.9700.0000.0000.0000.0000.0000.000
95A95THR0-0.075-0.05286.9080.0000.0000.0000.0000.0000.000
96A96ARG10.8420.90689.7690.0160.0160.0000.0000.0000.000
97A97PRO0-0.0040.03489.2690.0000.0000.0000.0000.0000.000
98A98PRO0-0.037-0.02585.1620.0000.0000.0000.0000.0000.000
99A99PHE00.006-0.04085.3690.0000.0000.0000.0000.0000.000
100A100GLY00.0760.04682.8940.0000.0000.0000.0000.0000.000
101A101LEU0-0.012-0.00780.4090.0000.0000.0000.0000.0000.000
102A102ASN0-0.059-0.03680.7540.0000.0000.0000.0000.0000.000
103A103SER0-0.039-0.02178.6880.0000.0000.0000.0000.0000.000
104A104VAL00.0090.00875.3960.0000.0000.0000.0000.0000.000
105A105ILE00.0260.02769.9520.0000.0000.0000.0000.0000.000
106A106THR0-0.021-0.01668.7160.0000.0000.0000.0000.0000.000
107A107PRO0-0.0230.00165.067-0.001-0.0010.0000.0000.0000.000
108A108ASN00.018-0.01160.7920.0020.0020.0000.0000.0000.000
109A109LEU00.0110.00664.2100.0000.0000.0000.0000.0000.000
110A110PHE0-0.025-0.00661.6920.0010.0010.0000.0000.0000.000
111A111PRO0-0.006-0.00758.004-0.001-0.0010.0000.0000.0000.000
112A112GLY00.0100.00956.6480.0010.0010.0000.0000.0000.000
113A113VAL0-0.022-0.01250.056-0.001-0.0010.0000.0000.0000.000
114A114SER0-0.0220.00151.1380.0000.0000.0000.0000.0000.000
115A115ILE0-0.014-0.01543.265-0.001-0.0010.0000.0000.0000.000
116A116SER00.0170.01645.8690.0020.0020.0000.0000.0000.000
117A117ALA0-0.050-0.02840.746-0.002-0.0020.0000.0000.0000.000
118A118ASP-1-0.889-0.92941.145-0.068-0.0680.0000.0000.0000.000
119A119LEU0-0.016-0.02335.286-0.004-0.0040.0000.0000.0000.000
120A120GLY00.0330.02037.3230.0040.0040.0000.0000.0000.000
121A121ASN0-0.024-0.01935.2890.0020.0020.0000.0000.0000.000
122A122GLY00.0200.01131.7430.0020.0020.0000.0000.0000.000
123A123PRO0-0.014-0.00429.5410.0040.0040.0000.0000.0000.000
124A124GLY0-0.0020.00929.946-0.004-0.0040.0000.0000.0000.000
125A125ILE0-0.053-0.03223.773-0.006-0.0060.0000.0000.0000.000
126A126GLN00.0020.00325.1150.0100.0100.0000.0000.0000.000
127A127GLU-1-0.823-0.88420.843-0.469-0.4690.0000.0000.0000.000
128A128VAL0-0.0210.00220.1800.0350.0350.0000.0000.0000.000
129A129ALA00.0360.01119.270-0.056-0.0560.0000.0000.0000.000
130A130THR0-0.051-0.05215.1960.0640.0640.0000.0000.0000.000
131A131PHE0-0.032-0.02012.8040.0420.0420.0000.0000.0000.000
132A132SER0-0.033-0.04818.199-0.046-0.0460.0000.0000.0000.000
133A133VAL0-0.039-0.02118.3810.0420.0420.0000.0000.0000.000
134A134ASP-1-0.859-0.92120.827-0.305-0.3050.0000.0000.0000.000
135A135VAL0-0.101-0.04817.938-0.014-0.0140.0000.0000.0000.000
136A136SER00.0170.00621.3750.0120.0120.0000.0000.0000.000
137A137GLY00.0250.03221.807-0.004-0.0040.0000.0000.0000.000
138A138ALA00.0340.00920.425-0.038-0.0380.0000.0000.0000.000
139A139GLU-1-0.969-0.98114.524-0.385-0.3850.0000.0000.0000.000
140A140GLY00.0480.03214.8540.0630.0630.0000.0000.0000.000
141A141GLY00.0340.01312.710-0.097-0.0970.0000.0000.0000.000
142A142VAL0-0.093-0.02812.8290.0800.0800.0000.0000.0000.000
143A143ALA00.000-0.0029.981-0.208-0.2080.0000.0000.0000.000
144A144VAL00.0110.01510.6980.1810.1810.0000.0000.0000.000
145A145SER0-0.023-0.01810.864-0.088-0.0880.0000.0000.0000.000
146A146ASN0-0.026-0.02512.6270.0380.0380.0000.0000.0000.000
147A147ALA00.0600.04114.9640.0550.0550.0000.0000.0000.000
148A148HIS0-0.062-0.04616.975-0.033-0.0330.0000.0000.0000.000
149A149GLY00.0270.02419.758-0.020-0.0200.0000.0000.0000.000
150A150THR0-0.065-0.05320.9840.0260.0260.0000.0000.0000.000
151A151VAL00.0140.01023.843-0.009-0.0090.0000.0000.0000.000
152A152THR0-0.011-0.03226.4410.0120.0120.0000.0000.0000.000
153A153GLY00.0240.02729.757-0.004-0.0040.0000.0000.0000.000
154A154ALA0-0.022-0.00428.064-0.001-0.0010.0000.0000.0000.000
155A155ALA00.017-0.00930.1020.0100.0100.0000.0000.0000.000
156A156GLY0-0.016-0.02129.611-0.007-0.0070.0000.0000.0000.000
157A157GLY0-0.012-0.00325.581-0.003-0.0030.0000.0000.0000.000
158A158VAL0-0.029-0.01521.709-0.004-0.0040.0000.0000.0000.000
159A159LEU00.0130.01219.277-0.002-0.0020.0000.0000.0000.000
160A160LEU00.0370.01516.2450.0080.0080.0000.0000.0000.000
161A161ARG10.8950.94015.6660.4420.4420.0000.0000.0000.000
162A162PRO00.0130.01511.2950.0700.0700.0000.0000.0000.000
163A163PHE00.0130.00313.598-0.038-0.0380.0000.0000.0000.000
164A164ALA00.0370.02012.172-0.056-0.0560.0000.0000.0000.000
165A165ARG10.7340.83514.2190.5220.5220.0000.0000.0000.000
166A166LEU00.0300.02117.476-0.020-0.0200.0000.0000.0000.000
167A167ILE0-0.033-0.02619.0970.0220.0220.0000.0000.0000.000
168A168ALA00.0680.04022.8780.0060.0060.0000.0000.0000.000
169A169SER0-0.021-0.01024.9460.0090.0090.0000.0000.0000.000
170A170THR0-0.040-0.02927.8350.0210.0210.0000.0000.0000.000
171A171GLY0-0.041-0.02328.2740.0150.0150.0000.0000.0000.000
172A172ASP-1-0.856-0.92425.445-0.268-0.2680.0000.0000.0000.000
173A173SER0-0.023-0.01422.724-0.019-0.0190.0000.0000.0000.000
174A174VAL00.0160.02117.9390.0120.0120.0000.0000.0000.000
175A175THR0-0.007-0.01817.442-0.042-0.0420.0000.0000.0000.000
176A176THR0-0.030-0.01012.0650.0990.0990.0000.0000.0000.000
177A177TYR0-0.013-0.02214.309-0.024-0.0240.0000.0000.0000.000
178A178GLY00.0070.00811.146-0.087-0.0870.0000.0000.0000.000
179A179GLU-1-0.955-0.98311.348-0.332-0.3320.0000.0000.0000.000
180A180PRO0-0.062-0.03812.489-0.060-0.0600.0000.0000.0000.000
181A181TRP00.0740.0418.3380.1870.1870.0000.0000.0000.000
182A182ASN00.002-0.01415.1360.0230.0230.0000.0000.0000.000
183A183MET00.0150.01916.0060.0320.0320.0000.0000.0000.000
184A184ASN0-0.049-0.00820.3280.0470.0470.0000.0000.0000.000