FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: 22RZR

Calculation Name: 2WGL-C-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2WGL

Chain ID: C

ChEMBL ID:

UniProt ID: Q09065

Base Structure: X-ray

Registration Date: 2023-03-14

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 209
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2480147.305771
FMO2-HF: Nuclear repulsion 2397158.178757
FMO2-HF: Total energy -82989.127014
FMO2-MP2: Total energy -83230.207851


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:25:ASN)


Summations of interaction energy for fragment #1(C:25:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.7711.7540.13-1.446-2.210.002
Interaction energy analysis for fragmet #1(C:25:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.026 / q_NPA : -0.019
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3C27ALA0-0.010-0.0072.8050.6993.7610.126-1.386-1.8020.002
4C28HIS00.0060.0074.0280.6110.9250.005-0.055-0.2640.000
5C29VAL0-0.026-0.0076.4070.7190.7190.0000.0000.0000.000
6C30ASP-1-0.804-0.9037.7080.4750.4750.0000.0000.0000.000
7C31ASN00.006-0.0178.776-0.396-0.3960.0000.0000.0000.000
8C32GLU-1-0.939-0.96511.4510.4240.4240.0000.0000.0000.000
9C33PHE0-0.015-0.01713.902-0.025-0.0250.0000.0000.0000.000
10C34LEU00.0150.01310.8300.0070.0070.0000.0000.0000.000
11C35ILE0-0.031-0.01414.2910.0180.0180.0000.0000.0000.000
12C36LEU0-0.016-0.01516.4690.0100.0100.0000.0000.0000.000
13C37GLN00.0170.01616.300-0.024-0.0240.0000.0000.0000.000
14C38VAL0-0.054-0.03716.0560.0000.0000.0000.0000.0000.000
15C39ASN0-0.090-0.06118.9520.0310.0310.0000.0000.0000.000
16C40ASP-1-0.848-0.90921.803-0.181-0.1810.0000.0000.0000.000
17C41ALA0-0.051-0.02623.827-0.006-0.0060.0000.0000.0000.000
18C42VAL0-0.050-0.02924.504-0.004-0.0040.0000.0000.0000.000
19C43PHE00.0030.01618.083-0.041-0.0410.0000.0000.0000.000
20C44PRO00.0310.03622.4650.0400.0400.0000.0000.0000.000
21C45ILE0-0.036-0.04022.777-0.015-0.0150.0000.0000.0000.000
22C46GLY0-0.026-0.01525.6720.0190.0190.0000.0000.0000.000
23C47SER0-0.026-0.02628.9910.0050.0050.0000.0000.0000.000
24C48TYR00.0170.00925.5570.0130.0130.0000.0000.0000.000
25C49THR0-0.011-0.02531.469-0.002-0.0020.0000.0000.0000.000
26C50HIS10.8470.90530.502-0.017-0.0170.0000.0000.0000.000
27C51SER0-0.012-0.00635.7360.0060.0060.0000.0000.0000.000
28C52PHE00.0250.01136.678-0.002-0.0020.0000.0000.0000.000
29C53GLY00.0420.03639.8160.0010.0010.0000.0000.0000.000
30C54LEU0-0.040-0.01941.2180.0060.0060.0000.0000.0000.000
31C55GLU-1-0.870-0.94643.063-0.020-0.0200.0000.0000.0000.000
32C56THR00.0340.01245.3940.0000.0000.0000.0000.0000.000
33C57TYR0-0.005-0.01045.0120.0020.0020.0000.0000.0000.000
34C58ILE00.0370.03644.7760.0010.0010.0000.0000.0000.000
35C59GLN00.0160.02248.7160.0020.0020.0000.0000.0000.000
36C60GLN0-0.083-0.04551.276-0.002-0.0020.0000.0000.0000.000
37C61LYS10.8900.94152.3480.0070.0070.0000.0000.0000.000
38C62LYS10.9050.95649.984-0.020-0.0200.0000.0000.0000.000
39C63VAL0-0.0060.00345.0800.0030.0030.0000.0000.0000.000
40C64THR0-0.016-0.00848.418-0.004-0.0040.0000.0000.0000.000
41C65ASN00.0590.03749.012-0.001-0.0010.0000.0000.0000.000
42C66LYS10.9500.98144.444-0.024-0.0240.0000.0000.0000.000
43C67GLU-1-0.888-0.95545.1920.0310.0310.0000.0000.0000.000
44C68SER00.018-0.00446.4360.0040.0040.0000.0000.0000.000
45C69ALA00.0270.01143.0380.0020.0020.0000.0000.0000.000
46C70LEU0-0.016-0.00640.5450.0040.0040.0000.0000.0000.000
47C71GLU-1-0.892-0.95441.9220.0730.0730.0000.0000.0000.000
48C72TYR0-0.0040.00140.5220.0050.0050.0000.0000.0000.000
49C73LEU0-0.003-0.00637.4050.0030.0030.0000.0000.0000.000
50C74LYS10.9160.96538.527-0.074-0.0740.0000.0000.0000.000
51C75ALA00.0110.01139.2520.0090.0090.0000.0000.0000.000
52C76ASN0-0.009-0.00836.7540.0050.0050.0000.0000.0000.000
53C77LEU0-0.045-0.03833.0780.0060.0060.0000.0000.0000.000
54C78SER0-0.061-0.02534.8930.0130.0130.0000.0000.0000.000
55C79SER00.0620.04337.1660.0040.0040.0000.0000.0000.000
56C80GLN00.004-0.00635.7650.0030.0030.0000.0000.0000.000
57C81PHE0-0.029-0.02028.9860.0050.0050.0000.0000.0000.000
58C82LEU00.0300.02031.5690.0100.0100.0000.0000.0000.000
59C83TYR00.008-0.01131.6920.0140.0140.0000.0000.0000.000
60C84THR00.0560.04231.5100.0060.0060.0000.0000.0000.000
61C85GLU-1-0.824-0.90428.7210.0700.0700.0000.0000.0000.000
62C86MET0-0.023-0.00627.1180.0090.0090.0000.0000.0000.000
63C87LEU00.0080.02226.6750.0320.0320.0000.0000.0000.000
64C88SER0-0.015-0.01226.9930.0240.0240.0000.0000.0000.000
65C89LEU0-0.034-0.00521.1170.0240.0240.0000.0000.0000.000
66C90LYS10.8650.93522.190-0.322-0.3220.0000.0000.0000.000
67C91LEU00.0360.02722.9810.0500.0500.0000.0000.0000.000
68C92THR0-0.062-0.04621.3460.0420.0420.0000.0000.0000.000
69C93TYR0-0.028-0.02215.8900.0610.0610.0000.0000.0000.000
70C94GLU-1-0.891-0.96618.5310.5880.5880.0000.0000.0000.000
71C95SER0-0.032-0.02320.2960.0580.0580.0000.0000.0000.000
72C96ALA0-0.0060.00116.0460.0160.0160.0000.0000.0000.000
73C97LEU0-0.0190.00414.6410.1170.1170.0000.0000.0000.000
74C98GLN0-0.040-0.01116.4300.0580.0580.0000.0000.0000.000
75C99GLN0-0.017-0.01813.729-0.180-0.1800.0000.0000.0000.000
76C100ASP-1-0.844-0.92417.9410.3350.3350.0000.0000.0000.000
77C101LEU00.021-0.00819.827-0.045-0.0450.0000.0000.0000.000
78C102LYS10.9290.96221.968-0.255-0.2550.0000.0000.0000.000
79C103LYS10.9250.95924.372-0.482-0.4820.0000.0000.0000.000
80C104ILE0-0.0170.01019.666-0.023-0.0230.0000.0000.0000.000
81C105LEU0-0.021-0.01924.018-0.035-0.0350.0000.0000.0000.000
82C106GLY00.0130.02026.352-0.024-0.0240.0000.0000.0000.000
83C107VAL00.0160.01126.361-0.017-0.0170.0000.0000.0000.000
84C108GLU-1-0.761-0.83724.1250.0760.0760.0000.0000.0000.000
85C109GLU-1-0.960-0.97028.4350.0830.0830.0000.0000.0000.000
86C110VAL00.0240.00731.634-0.014-0.0140.0000.0000.0000.000
87C111ILE00.0250.01128.652-0.011-0.0110.0000.0000.0000.000
88C112MET0-0.092-0.01932.058-0.016-0.0160.0000.0000.0000.000
89C113LEU0-0.013-0.02633.677-0.012-0.0120.0000.0000.0000.000
90C114SER0-0.036-0.01135.950-0.001-0.0010.0000.0000.0000.000
91C115THR0-0.077-0.02434.806-0.002-0.0020.0000.0000.0000.000
92C116SER0-0.046-0.00937.372-0.009-0.0090.0000.0000.0000.000
93C117PRO00.043-0.00340.2540.0030.0030.0000.0000.0000.000
94C118MET00.0360.01639.5920.0020.0020.0000.0000.0000.000
95C119GLU-1-0.866-0.94938.511-0.031-0.0310.0000.0000.0000.000
96C120LEU0-0.0070.00135.519-0.009-0.0090.0000.0000.0000.000
97C121ARG10.9770.98434.627-0.002-0.0020.0000.0000.0000.000
98C122LEU0-0.043-0.01433.876-0.004-0.0040.0000.0000.0000.000
99C123ALA0-0.046-0.01933.018-0.013-0.0130.0000.0000.0000.000
100C124ASN00.0810.04130.876-0.023-0.0230.0000.0000.0000.000
101C125GLN00.0470.04229.095-0.012-0.0120.0000.0000.0000.000
102C126LYS10.9210.96727.9640.1070.1070.0000.0000.0000.000
103C127LEU00.005-0.00126.749-0.023-0.0230.0000.0000.0000.000
104C128GLY00.0520.01724.643-0.014-0.0140.0000.0000.0000.000
105C129ASN0-0.009-0.01323.295-0.028-0.0280.0000.0000.0000.000
106C130ARG10.8280.92323.0920.2320.2320.0000.0000.0000.000
107C131PHE00.0360.03117.734-0.060-0.0600.0000.0000.0000.000
108C132ILE00.0370.02418.024-0.059-0.0590.0000.0000.0000.000
109C133LYS10.9090.95818.0340.2480.2480.0000.0000.0000.000
110C134THR0-0.026-0.02818.866-0.079-0.0790.0000.0000.0000.000
111C135LEU0-0.002-0.00114.121-0.085-0.0850.0000.0000.0000.000
112C136GLN0-0.030-0.01914.482-0.129-0.1290.0000.0000.0000.000
113C137ALA0-0.040-0.00615.370-0.104-0.1040.0000.0000.0000.000
114C138MET0-0.053-0.01613.697-0.046-0.0460.0000.0000.0000.000
115C139ASN00.0290.00112.352-0.253-0.2530.0000.0000.0000.000
116C140GLU-1-0.970-0.9669.212-2.513-2.5130.0000.0000.0000.000
117C141LEU0-0.065-0.0308.159-0.775-0.7750.0000.0000.0000.000
118C142ASP-1-0.870-0.9344.872-2.723-2.574-0.001-0.005-0.1440.000
119C143MET0-0.070-0.0306.9110.4960.4960.0000.0000.0000.000
120C144GLY00.0410.0307.6620.5800.5800.0000.0000.0000.000
121C145GLU-1-0.889-0.9528.465-0.060-0.0600.0000.0000.0000.000
122C146PHE0-0.0070.01011.247-0.150-0.1500.0000.0000.0000.000
123C147PHE00.0570.02512.257-0.141-0.1410.0000.0000.0000.000
124C148ASN0-0.005-0.00111.156-0.086-0.0860.0000.0000.0000.000
125C149ALA00.0070.00114.371-0.041-0.0410.0000.0000.0000.000
126C150TYR0-0.061-0.07016.801-0.021-0.0210.0000.0000.0000.000
127C151ALA0-0.033-0.02117.015-0.028-0.0280.0000.0000.0000.000
128C152GLN0-0.053-0.02217.509-0.001-0.0010.0000.0000.0000.000
129C153LYS10.8950.94820.478-0.079-0.0790.0000.0000.0000.000
130C154THR0-0.060-0.02322.1070.0070.0070.0000.0000.0000.000
131C155LYS10.9240.95623.941-0.052-0.0520.0000.0000.0000.000
132C156ASP-1-0.900-0.96227.512-0.013-0.0130.0000.0000.0000.000
133C157PRO00.0190.04323.7780.0190.0190.0000.0000.0000.000
134C158THR00.015-0.01325.028-0.012-0.0120.0000.0000.0000.000
135C159HIS00.015-0.00722.3020.0020.0020.0000.0000.0000.000
136C160ALA00.0440.02022.6450.0080.0080.0000.0000.0000.000
137C161THR0-0.010-0.02522.5560.0260.0260.0000.0000.0000.000
138C162SER00.0580.02020.0470.0370.0370.0000.0000.0000.000
139C163TYR0-0.065-0.03118.2980.0140.0140.0000.0000.0000.000
140C164GLY00.0540.02817.7150.0510.0510.0000.0000.0000.000
141C165VAL0-0.005-0.00315.6590.1080.1080.0000.0000.0000.000
142C166PHE00.008-0.01213.1180.1350.1350.0000.0000.0000.000
143C167ALA0-0.004-0.00112.9190.0850.0850.0000.0000.0000.000
144C168ALA00.0070.00113.1290.1660.1660.0000.0000.0000.000
145C169SER0-0.044-0.02510.8280.2840.2840.0000.0000.0000.000
146C170LEU0-0.0130.0027.6350.3790.3790.0000.0000.0000.000
147C171GLY0-0.0010.0118.8900.3470.3470.0000.0000.0000.000
148C172ILE0-0.044-0.01210.879-0.078-0.0780.0000.0000.0000.000
149C173GLU-1-0.818-0.90313.4720.6080.6080.0000.0000.0000.000
150C174LEU00.0620.03616.689-0.117-0.1170.0000.0000.0000.000
151C175LYS10.9450.96319.528-0.512-0.5120.0000.0000.0000.000
152C176LYS10.8400.93816.570-0.461-0.4610.0000.0000.0000.000
153C177ALA00.0470.02317.740-0.079-0.0790.0000.0000.0000.000
154C178LEU00.0360.01119.492-0.076-0.0760.0000.0000.0000.000
155C179ARG10.9470.97422.056-0.383-0.3830.0000.0000.0000.000
156C180HIS0-0.040-0.01620.8120.0000.0000.0000.0000.0000.000
157C181TYR00.014-0.00222.433-0.040-0.0400.0000.0000.0000.000
158C182LEU0-0.004-0.00323.938-0.031-0.0310.0000.0000.0000.000
159C183TYR00.0000.00726.524-0.027-0.0270.0000.0000.0000.000
160C184ALA00.0650.03325.183-0.018-0.0180.0000.0000.0000.000
161C185GLN00.0430.03526.010-0.025-0.0250.0000.0000.0000.000
162C186THR0-0.004-0.01729.358-0.009-0.0090.0000.0000.0000.000
163C187SER0-0.026-0.00230.305-0.010-0.0100.0000.0000.0000.000
164C188ASN00.008-0.00130.986-0.001-0.0010.0000.0000.0000.000
165C189MET00.0110.00532.429-0.006-0.0060.0000.0000.0000.000
166C190VAL00.0060.00635.317-0.002-0.0020.0000.0000.0000.000
167C191ILE00.0080.01034.642-0.005-0.0050.0000.0000.0000.000
168C192ASN0-0.011-0.00237.0880.0010.0010.0000.0000.0000.000
169C193CYS00.0340.01138.9190.0000.0000.0000.0000.0000.000
170C194VAL0-0.037-0.01939.837-0.002-0.0020.0000.0000.0000.000
171C195LYS10.9330.96037.3050.0720.0720.0000.0000.0000.000
172C196SER0-0.030-0.00742.181-0.004-0.0040.0000.0000.0000.000
173C197VAL0-0.0600.00544.6230.0010.0010.0000.0000.0000.000
174C198PRO0-0.015-0.00445.9010.0000.0000.0000.0000.0000.000
175C199LEU0-0.026-0.03143.0000.0050.0050.0000.0000.0000.000
176C200SER00.0210.01144.903-0.006-0.0060.0000.0000.0000.000
177C201GLN00.0840.01139.4390.0060.0060.0000.0000.0000.000
178C202ASN00.0220.00340.9280.0030.0030.0000.0000.0000.000
179C203ASP-1-0.893-0.95142.2680.0140.0140.0000.0000.0000.000
180C204GLY00.0450.01839.7940.0070.0070.0000.0000.0000.000
181C205GLN00.004-0.00335.2690.0120.0120.0000.0000.0000.000
182C206LYS10.9210.96938.458-0.008-0.0080.0000.0000.0000.000
183C207ILE0-0.0040.00438.4760.0090.0090.0000.0000.0000.000
184C208LEU00.013-0.00133.1820.0100.0100.0000.0000.0000.000
185C209LEU00.0040.01835.4530.0110.0110.0000.0000.0000.000
186C210SER0-0.055-0.03937.2330.0120.0120.0000.0000.0000.000
187C211LEU0-0.008-0.00735.3970.0080.0080.0000.0000.0000.000
188C212GLN00.0090.01632.6420.0010.0010.0000.0000.0000.000
189C213SER0-0.0020.00233.5440.0170.0170.0000.0000.0000.000
190C214PRO0-0.016-0.01135.2660.0120.0120.0000.0000.0000.000
191C215PHE00.0230.00030.6280.0070.0070.0000.0000.0000.000
192C216ASN00.004-0.00330.0310.0340.0340.0000.0000.0000.000
193C217GLN00.0110.00431.8320.0100.0100.0000.0000.0000.000
194C218LEU00.0120.00331.7080.0060.0060.0000.0000.0000.000
195C219ILE0-0.0130.00326.2150.0090.0090.0000.0000.0000.000
196C220GLU-1-0.892-0.96028.9620.3560.3560.0000.0000.0000.000
197C221LYS10.9380.98630.917-0.172-0.1720.0000.0000.0000.000
198C222THR0-0.011-0.02927.268-0.001-0.0010.0000.0000.0000.000
199C223LEU0-0.062-0.04424.9410.0170.0170.0000.0000.0000.000
200C224GLU-1-0.955-0.96528.4970.2670.2670.0000.0000.0000.000
201C225LEU0-0.099-0.02331.200-0.015-0.0150.0000.0000.0000.000
202C226ASP-1-0.788-0.89330.1610.2840.2840.0000.0000.0000.000
203C227GLU-1-0.863-0.96528.6660.2970.2970.0000.0000.0000.000
204C228SER0-0.138-0.05931.819-0.026-0.0260.0000.0000.0000.000
205C229HIS00.0490.02334.022-0.012-0.0120.0000.0000.0000.000
206C230LEU00.0010.00430.263-0.013-0.0130.0000.0000.0000.000
207C231CYS0-0.070-0.03133.595-0.009-0.0090.0000.0000.0000.000
208C232THR0-0.051-0.03135.782-0.011-0.0110.0000.0000.0000.000
209C233ALA0-0.052-0.01537.819-0.008-0.0080.0000.0000.0000.000