FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: 246NR

Calculation Name: 2C4J-A-Xray547

Preferred Name: Glutathione S-transferase Mu 2

Target Type: SINGLE PROTEIN

Ligand Name: l-gamma-glutamyl-s-[(2s)-2-hydroxy-2-phenylethyl]-l-cysteinylglycine

Ligand 3-letter code: GSO

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 2C4J

Chain ID: A

ChEMBL ID: CHEMBL4589

UniProt ID: P28161

Base Structure: X-ray

Registration Date: 2025-10-03

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 217
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2849280.219525
FMO2-HF: Nuclear repulsion 2759134.673077
FMO2-HF: Total energy -90145.546448
FMO2-MP2: Total energy -90407.027944


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:PRO)


Summations of interaction energy for fragment #1(A:2:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-97.379-87.4828.313-7.293-10.915-0.083
Interaction energy analysis for fragmet #1(A:2:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.824 / q_NPA : 0.915
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4THR0-0.030-0.0122.819-4.866-2.6430.334-1.125-1.431-0.007
4A5LEU00.0130.0115.2634.2724.326-0.001-0.005-0.0480.000
26A27SER0-0.001-0.0042.797-11.041-8.5140.837-1.365-1.999-0.014
27A28TYR0-0.083-0.0672.541-16.252-13.6202.983-2.599-3.016-0.025
28A29GLU-1-0.894-0.9392.497-65.359-62.9014.160-2.196-4.421-0.037
29A30GLU-1-0.859-0.9294.068-22.368-22.3650.000-0.0030.0000.000
5A6GLY00.0200.0108.0880.0920.0920.0000.0000.0000.000
6A7TYR00.018-0.01411.0011.8131.8130.0000.0000.0000.000
7A8TRP00.0360.01313.894-0.321-0.3210.0000.0000.0000.000
8A9ASN0-0.031-0.01015.732-1.530-1.5300.0000.0000.0000.000
9A10ILE0-0.005-0.01016.6970.7930.7930.0000.0000.0000.000
10A11ARG10.7580.88417.26112.13412.1340.0000.0000.0000.000
11A12GLY0-0.018-0.01418.181-0.626-0.6260.0000.0000.0000.000
12A13LEU0-0.016-0.02618.5620.2550.2550.0000.0000.0000.000
13A14ALA00.0210.01213.595-0.369-0.3690.0000.0000.0000.000
14A15HIS00.0290.02914.562-1.636-1.6360.0000.0000.0000.000
15A16SER00.0480.02416.044-0.722-0.7220.0000.0000.0000.000
16A17ILE00.0070.00211.354-0.380-0.3800.0000.0000.0000.000
17A18ARG10.8240.89411.12119.35619.3560.0000.0000.0000.000
18A19LEU00.0110.01411.835-0.899-0.8990.0000.0000.0000.000
19A20LEU00.0120.01213.993-0.048-0.0480.0000.0000.0000.000
20A21LEU0-0.034-0.0087.605-0.848-0.8480.0000.0000.0000.000
21A22GLU-1-0.795-0.8819.586-27.691-27.6910.0000.0000.0000.000
22A23TYR0-0.004-0.00811.1470.5800.5800.0000.0000.0000.000
23A24THR0-0.043-0.04011.0830.0260.0260.0000.0000.0000.000
24A25ASP-1-0.843-0.88310.237-22.512-22.5120.0000.0000.0000.000
25A26SER0-0.016-0.0066.505-3.462-3.4620.0000.0000.0000.000
30A31LYS10.8180.9137.54823.21723.2170.0000.0000.0000.000
31A32LYS10.9600.9819.76323.35823.3580.0000.0000.0000.000
32A33TYR0-0.042-0.03612.9380.2050.2050.0000.0000.0000.000
33A34THR00.006-0.00816.3980.2790.2790.0000.0000.0000.000
34A35MET0-0.066-0.01019.7580.1640.1640.0000.0000.0000.000
35A36GLY00.0520.02223.1620.0680.0680.0000.0000.0000.000
36A37ASP-1-0.850-0.92326.649-11.006-11.0060.0000.0000.0000.000
37A38ALA00.0110.02429.5290.0330.0330.0000.0000.0000.000
38A39PRO0-0.027-0.01932.8110.0810.0810.0000.0000.0000.000
39A40ASP-1-0.874-0.95430.730-9.899-9.8990.0000.0000.0000.000
40A41TYR0-0.022-0.01727.719-0.148-0.1480.0000.0000.0000.000
41A42ASP-1-0.811-0.89726.581-12.198-12.1980.0000.0000.0000.000
42A43ARG10.9330.94423.15911.56411.5640.0000.0000.0000.000
43A44SER00.0190.02122.400-0.852-0.8520.0000.0000.0000.000
44A45GLN00.004-0.00915.8850.0850.0850.0000.0000.0000.000
45A46TRP00.0360.02015.676-0.884-0.8840.0000.0000.0000.000
46A47LEU0-0.012-0.01919.035-0.410-0.4100.0000.0000.0000.000
47A48ASN00.0050.01121.2270.3710.3710.0000.0000.0000.000
48A49GLU-1-0.811-0.87814.317-20.798-20.7980.0000.0000.0000.000
49A50LYS10.9130.98617.59913.04713.0470.0000.0000.0000.000
50A51PHE00.016-0.01618.360-0.447-0.4470.0000.0000.0000.000
51A52LYS10.8680.93417.76715.13715.1370.0000.0000.0000.000
52A53LEU0-0.0060.00712.166-0.672-0.6720.0000.0000.0000.000
53A54GLY0-0.021-0.00413.986-1.162-1.1620.0000.0000.0000.000
54A55LEU0-0.022-0.01613.596-0.371-0.3710.0000.0000.0000.000
55A56ASP-1-0.858-0.92717.376-15.507-15.5070.0000.0000.0000.000
56A57PHE0-0.0010.00019.8460.8720.8720.0000.0000.0000.000
57A58PRO0-0.023-0.00718.561-0.491-0.4910.0000.0000.0000.000
58A59ASN0-0.019-0.01917.9460.9430.9430.0000.0000.0000.000
59A60LEU0-0.0140.01814.896-1.207-1.2070.0000.0000.0000.000
60A61PRO0-0.028-0.02013.9370.9990.9990.0000.0000.0000.000
61A62TYR00.007-0.0159.7780.3560.3560.0000.0000.0000.000
62A63LEU0-0.0020.0017.748-1.282-1.2820.0000.0000.0000.000
63A64ILE0-0.009-0.0037.4322.2442.2440.0000.0000.0000.000
64A65ASP-1-0.774-0.8606.494-44.706-44.7060.0000.0000.0000.000
65A66GLY00.0370.0236.6412.8242.8240.0000.0000.0000.000
66A67THR0-0.006-0.0107.8761.5851.5850.0000.0000.0000.000
67A68HIS0-0.005-0.00111.2973.0043.0040.0000.0000.0000.000
68A69LYS10.9110.95910.94322.04922.0490.0000.0000.0000.000
69A70ILE00.0110.02013.0381.6321.6320.0000.0000.0000.000
70A71THR0-0.029-0.01914.089-0.916-0.9160.0000.0000.0000.000
71A72GLN00.0500.01816.8100.4640.4640.0000.0000.0000.000
72A73SER00.0430.01516.768-0.529-0.5290.0000.0000.0000.000
73A74ASN00.0650.03217.415-1.050-1.0500.0000.0000.0000.000
74A75ALA00.0110.01618.460-0.077-0.0770.0000.0000.0000.000
75A76ILE0-0.034-0.01612.383-0.654-0.6540.0000.0000.0000.000
76A77LEU0-0.014-0.00714.276-0.998-0.9980.0000.0000.0000.000
77A78ARG10.7920.84516.14112.54012.5400.0000.0000.0000.000
78A79TYR0-0.110-0.0719.9281.2381.2380.0000.0000.0000.000
79A80ILE00.0170.00010.456-0.435-0.4350.0000.0000.0000.000
80A81ALA00.0230.02012.839-0.043-0.0430.0000.0000.0000.000
81A82ARG10.9650.98016.28816.59816.5980.0000.0000.0000.000
82A83LYS10.8200.9077.18633.72733.7270.0000.0000.0000.000
83A84HIS0-0.033-0.02810.085-1.409-1.4090.0000.0000.0000.000
84A85ASN00.0060.01815.3630.7760.7760.0000.0000.0000.000
85A86LEU0-0.0020.00315.8840.6010.6010.0000.0000.0000.000
86A87CYS0-0.023-0.01619.395-0.353-0.3530.0000.0000.0000.000
87A88GLY00.0210.00522.1330.1590.1590.0000.0000.0000.000
88A89GLU-1-0.893-0.92525.360-12.013-12.0130.0000.0000.0000.000
89A90SER0-0.049-0.04627.6690.3360.3360.0000.0000.0000.000
90A91GLU-1-0.843-0.93130.837-9.482-9.4820.0000.0000.0000.000
91A92LYS10.9240.94932.9578.2298.2290.0000.0000.0000.000
92A93GLU-1-0.817-0.87128.615-10.454-10.4540.0000.0000.0000.000
93A94GLN00.0450.01627.512-0.129-0.1290.0000.0000.0000.000
94A95ILE00.0150.01129.304-0.083-0.0830.0000.0000.0000.000
95A96ARG10.7460.86430.9529.5069.5060.0000.0000.0000.000
96A97GLU-1-0.842-0.92124.023-12.880-12.8800.0000.0000.0000.000
97A98ASP-1-0.798-0.89527.223-11.529-11.5290.0000.0000.0000.000
98A99ILE0-0.034-0.00328.6310.0380.0380.0000.0000.0000.000
99A100LEU0-0.010-0.00628.4840.0320.0320.0000.0000.0000.000
100A101GLU-1-0.817-0.88423.209-13.182-13.1820.0000.0000.0000.000
101A102ASN0-0.071-0.04426.302-0.255-0.2550.0000.0000.0000.000
102A103GLN00.0270.02428.7560.1760.1760.0000.0000.0000.000
103A104PHE00.026-0.00326.5860.0910.0910.0000.0000.0000.000
104A105MET0-0.020-0.00122.579-0.248-0.2480.0000.0000.0000.000
105A106ASP-1-0.863-0.93327.226-9.653-9.6530.0000.0000.0000.000
106A107SER0-0.015-0.01929.9610.1350.1350.0000.0000.0000.000
107A108ARG10.8130.90521.74813.19813.1980.0000.0000.0000.000
108A109MET0-0.043-0.02527.824-0.088-0.0880.0000.0000.0000.000
109A110GLN0-0.011-0.00229.5240.1660.1660.0000.0000.0000.000
110A111LEU00.0370.03028.5910.0920.0920.0000.0000.0000.000
111A112ALA00.001-0.00427.1800.0290.0290.0000.0000.0000.000
112A113LYS10.9350.96529.1228.6318.6310.0000.0000.0000.000
113A114LEU00.0160.01632.2270.1280.1280.0000.0000.0000.000
114A115CYS0-0.044-0.01330.0250.1440.1440.0000.0000.0000.000
115A116TYR0-0.039-0.01924.806-0.299-0.2990.0000.0000.0000.000
116A117ASP-1-0.867-0.91531.826-8.099-8.0990.0000.0000.0000.000
117A118PRO0-0.016-0.02435.6160.0460.0460.0000.0000.0000.000
118A119ASP-1-0.832-0.89937.864-7.052-7.0520.0000.0000.0000.000
119A120PHE0-0.002-0.00834.4740.1100.1100.0000.0000.0000.000
120A121GLU-1-0.844-0.93438.134-7.781-7.7810.0000.0000.0000.000
121A122LYS10.8130.89340.9197.0567.0560.0000.0000.0000.000
122A123LEU00.0340.02438.9600.0710.0710.0000.0000.0000.000
123A124LYS10.8210.91637.7757.8447.8440.0000.0000.0000.000
124A125PRO0-0.006-0.01539.462-0.069-0.0690.0000.0000.0000.000
125A126GLU-1-0.903-0.93841.595-7.160-7.1600.0000.0000.0000.000
126A127TYR0-0.045-0.04632.701-0.084-0.0840.0000.0000.0000.000
127A128LEU0-0.027-0.02337.110-0.095-0.0950.0000.0000.0000.000
128A129GLN0-0.031-0.00939.6740.0390.0390.0000.0000.0000.000
129A130ALA00.0450.02739.6060.0560.0560.0000.0000.0000.000
130A131LEU0-0.035-0.00434.135-0.103-0.1030.0000.0000.0000.000
131A132PRO00.019-0.00937.653-0.139-0.1390.0000.0000.0000.000
132A133GLU-1-0.926-0.95840.150-7.246-7.2460.0000.0000.0000.000
133A134MET0-0.0370.00733.778-0.215-0.2150.0000.0000.0000.000
134A135LEU00.0130.00133.051-0.204-0.2040.0000.0000.0000.000
135A136LYS10.9700.99736.1907.0217.0210.0000.0000.0000.000
136A137LEU0-0.049-0.02237.3890.0260.0260.0000.0000.0000.000
137A138TYR00.036-0.00931.409-0.090-0.0900.0000.0000.0000.000
138A139SER0-0.043-0.02834.553-0.021-0.0210.0000.0000.0000.000
139A140GLN0-0.008-0.02236.3940.1840.1840.0000.0000.0000.000
140A141PHE00.0030.00932.4380.0820.0820.0000.0000.0000.000
141A142LEU00.0200.03730.859-0.080-0.0800.0000.0000.0000.000
142A143GLY00.0220.01234.2340.0400.0400.0000.0000.0000.000
143A144LYS10.9090.93336.7457.7977.7970.0000.0000.0000.000
144A145GLN00.0220.03432.256-0.155-0.1550.0000.0000.0000.000
145A146PRO0-0.0260.00929.421-0.018-0.0180.0000.0000.0000.000
146A147TRP00.0480.01524.632-0.425-0.4250.0000.0000.0000.000
147A148PHE00.021-0.00527.5150.4170.4170.0000.0000.0000.000
148A149LEU0-0.036-0.01025.7980.3710.3710.0000.0000.0000.000
149A150GLY00.0150.01329.1200.1660.1660.0000.0000.0000.000
150A151ASP-1-0.876-0.96929.762-9.701-9.7010.0000.0000.0000.000
151A152LYS10.7150.85322.60412.70212.7020.0000.0000.0000.000
152A153ILE0-0.0190.00720.9960.0560.0560.0000.0000.0000.000
153A154THR0-0.016-0.02321.132-0.353-0.3530.0000.0000.0000.000
154A155PHE00.025-0.01318.547-0.190-0.1900.0000.0000.0000.000
155A156VAL00.0130.01319.994-0.097-0.0970.0000.0000.0000.000
156A157ASP-1-0.732-0.86522.690-11.773-11.7730.0000.0000.0000.000
157A158PHE00.015-0.00616.6150.0130.0130.0000.0000.0000.000
158A159ILE0-0.067-0.03420.552-0.159-0.1590.0000.0000.0000.000
159A160ALA00.0200.01922.4860.2780.2780.0000.0000.0000.000
160A161TYR0-0.060-0.05120.8280.0780.0780.0000.0000.0000.000
161A162ASP-1-0.744-0.84220.937-13.560-13.5600.0000.0000.0000.000
162A163VAL0-0.029-0.01323.0560.2250.2250.0000.0000.0000.000
163A164LEU00.0060.01226.4250.4560.4560.0000.0000.0000.000
164A165GLU-1-0.792-0.86624.985-11.729-11.7290.0000.0000.0000.000
165A166ARG10.8180.88521.36813.17513.1750.0000.0000.0000.000
166A167ASN00.0110.00627.1870.4990.4990.0000.0000.0000.000
167A168GLN00.0200.00429.5930.4810.4810.0000.0000.0000.000
168A169VAL0-0.084-0.03826.7270.1440.1440.0000.0000.0000.000
169A170PHE0-0.034-0.02530.1350.1780.1780.0000.0000.0000.000
170A171GLU-1-0.876-0.94132.453-7.787-7.7870.0000.0000.0000.000
171A172PRO0-0.003-0.00234.154-0.038-0.0380.0000.0000.0000.000
172A173SER00.0430.02735.162-0.132-0.1320.0000.0000.0000.000
173A174CYS0-0.063-0.01134.2840.0370.0370.0000.0000.0000.000
174A175LEU00.021-0.00730.6960.0610.0610.0000.0000.0000.000
175A176ASP-1-0.874-0.92235.451-8.212-8.2120.0000.0000.0000.000
176A177ALA0-0.050-0.01738.4000.1370.1370.0000.0000.0000.000
177A178PHE0-0.027-0.01536.3800.1360.1360.0000.0000.0000.000
178A179PRO00.0410.01536.031-0.275-0.2750.0000.0000.0000.000
179A180ASN00.0010.00035.093-0.184-0.1840.0000.0000.0000.000
180A181LEU00.0100.00631.872-0.333-0.3330.0000.0000.0000.000
181A182LYS10.8710.92831.1018.3268.3260.0000.0000.0000.000
182A183ASP-1-0.919-0.96831.260-9.078-9.0780.0000.0000.0000.000
183A184PHE0-0.061-0.03025.286-0.292-0.2920.0000.0000.0000.000
184A185ILE0-0.017-0.00126.407-0.473-0.4730.0000.0000.0000.000
185A186SER0-0.016-0.00326.288-0.484-0.4840.0000.0000.0000.000
186A187ARG10.8640.93726.9869.8869.8860.0000.0000.0000.000
187A188PHE00.0290.00819.022-0.416-0.4160.0000.0000.0000.000
188A189GLU-1-0.840-0.93122.207-12.625-12.6250.0000.0000.0000.000
189A190GLY0-0.025-0.00622.775-0.267-0.2670.0000.0000.0000.000
190A191LEU0-0.048-0.00720.451-0.021-0.0210.0000.0000.0000.000
191A192GLU-1-0.931-0.96519.855-14.356-14.3560.0000.0000.0000.000
192A193LYS10.8380.89814.19319.21719.2170.0000.0000.0000.000
193A194ILE00.0040.02115.948-0.921-0.9210.0000.0000.0000.000
194A195SER00.0180.00818.011-0.063-0.0630.0000.0000.0000.000
195A196ALA0-0.017-0.01916.5300.1810.1810.0000.0000.0000.000
196A197TYR00.0270.00912.3250.2430.2430.0000.0000.0000.000
197A198MET0-0.018-0.00615.506-0.119-0.1190.0000.0000.0000.000
198A199LYS10.8880.96118.80313.26213.2620.0000.0000.0000.000
199A200SER0-0.027-0.01314.805-0.287-0.2870.0000.0000.0000.000
200A201SER0-0.021-0.02516.048-0.007-0.0070.0000.0000.0000.000
201A202ARG10.8030.8955.71032.82332.8230.0000.0000.0000.000
202A203PHE00.0280.03013.814-0.551-0.5510.0000.0000.0000.000
203A204LEU0-0.022-0.00915.1800.5300.5300.0000.0000.0000.000
204A205PRO0-0.023-0.01017.5570.1860.1860.0000.0000.0000.000
205A206ARG10.9290.97020.79812.64612.6460.0000.0000.0000.000
206A207PRO00.0410.03420.568-0.611-0.6110.0000.0000.0000.000
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213A214VAL00.0210.02530.0520.0130.0130.0000.0000.0000.000
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215A216GLY00.0470.01227.961-0.231-0.2310.0000.0000.0000.000
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